EWM25992.1, cds4686 (CDS) Nannochloropsis gaditana

Overview
NameEWM25992.1
Unique Namecds4686
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:99806..100000 +
Alignment locationCM002464.1:100223..100787 +
Alignment locationCM002464.1:101018..101192 +
Alignment locationCM002464.1:101319..101576 +
Alignment locationCM002464.1:101653..101707 +
Alignment locationCM002464.1:101882..102025 +
Alignment locationCM002464.1:102169..102259 +
Alignment locationCM002464.1:102358..102437 +
Alignment locationCM002464.1:102613..102714 +
Alignment locationCM002464.1:102873..102965 +
Alignment locationCM002464.1:103204..103259 +
Alignment locationCM002464.1:103430..103619 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25992.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100151g9.9626.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:99806..100000 +
CM002464.1supercontigCM002464.1:100223..100787 +
CM002464.1supercontigCM002464.1:101018..101192 +
CM002464.1supercontigCM002464.1:101319..101576 +
CM002464.1supercontigCM002464.1:101653..101707 +
CM002464.1supercontigCM002464.1:101882..102025 +
CM002464.1supercontigCM002464.1:102169..102259 +
CM002464.1supercontigCM002464.1:102358..102437 +
CM002464.1supercontigCM002464.1:102613..102714 +
CM002464.1supercontigCM002464.1:102873..102965 +
CM002464.1supercontigCM002464.1:103204..103259 +
CM002464.1supercontigCM002464.1:103430..103619 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25992.1 vs. NCBI_GenBank
Match: gi|585107893|gb|EWM25992.1| (hypothetical protein Naga_100151g9 [Nannochloropsis gaditana])

HSP 1 Score: 1373.61 bits (3554), Expect = 0.000e+0
Identity = 667/667 (100.00%), Postives = 667/667 (100.00%), Query Frame = 0 
Query:    1 MHVHVMWKNAILTGTAPQKNAIRPTRDDCNEVPPIPQVWESPPRWEPRHMDTVSLGEKQEGGDANLPDLCPLPDASHQTTSPLVKTELPDDDKDDENKGKRDTGDGTDAGGDLCSPAFSSAASSPSSFSSLTTASKRRSKAVARASAVWNSLSRLSTPRTPASSAMASPSPSSSLSSSTSRRSCSASFYAARSGGGQGGSGEGKTTGMNEGEEGEEEELESVATQSPAPKGKMGGRGIREDTGVRTLRLVEEQEINPSEVESALDAVNVAAVYMGFQKGKEEGKEGRGEAGVVFPIEIAEGITSALQRLDDGGVINEVTDFCLNVAALEPPRSRTYMPAAFFSDVLEATPEEEGGGFKREGDIFRHCICRMEEVKNCAKNEREDGIAFREAVESVEKRALEYKEEIENREMHYAEQVEAKAEEVEENTKLLHKERVVFRSMVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARLAYLSYVLDHVAALRKGMEPMLKERQTERVRKLYRVRRTLQNLFSAAHESTNYLLQSIEADKVALQDDLAKLQRKYTNAGPTLQADMTTLREKVKEMTEQWQLHRQELEEMRSEHTEAKIDIALLLEDEAREALELGVMELEEDKEKGEDERKESDEAGAKGTKKSMWTFCVVM 667
            MHVHVMWKNAILTGTAPQKNAIRPTRDDCNEVPPIPQVWESPPRWEPRHMDTVSLGEKQEGGDANLPDLCPLPDASHQTTSPLVKTELPDDDKDDENKGKRDTGDGTDAGGDLCSPAFSSAASSPSSFSSLTTASKRRSKAVARASAVWNSLSRLSTPRTPASSAMASPSPSSSLSSSTSRRSCSASFYAARSGGGQGGSGEGKTTGMNEGEEGEEEELESVATQSPAPKGKMGGRGIREDTGVRTLRLVEEQEINPSEVESALDAVNVAAVYMGFQKGKEEGKEGRGEAGVVFPIEIAEGITSALQRLDDGGVINEVTDFCLNVAALEPPRSRTYMPAAFFSDVLEATPEEEGGGFKREGDIFRHCICRMEEVKNCAKNEREDGIAFREAVESVEKRALEYKEEIENREMHYAEQVEAKAEEVEENTKLLHKERVVFRSMVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARLAYLSYVLDHVAALRKGMEPMLKERQTERVRKLYRVRRTLQNLFSAAHESTNYLLQSIEADKVALQDDLAKLQRKYTNAGPTLQADMTTLREKVKEMTEQWQLHRQELEEMRSEHTEAKIDIALLLEDEAREALELGVMELEEDKEKGEDERKESDEAGAKGTKKSMWTFCVVM
Sbjct:    1 MHVHVMWKNAILTGTAPQKNAIRPTRDDCNEVPPIPQVWESPPRWEPRHMDTVSLGEKQEGGDANLPDLCPLPDASHQTTSPLVKTELPDDDKDDENKGKRDTGDGTDAGGDLCSPAFSSAASSPSSFSSLTTASKRRSKAVARASAVWNSLSRLSTPRTPASSAMASPSPSSSLSSSTSRRSCSASFYAARSGGGQGGSGEGKTTGMNEGEEGEEEELESVATQSPAPKGKMGGRGIREDTGVRTLRLVEEQEINPSEVESALDAVNVAAVYMGFQKGKEEGKEGRGEAGVVFPIEIAEGITSALQRLDDGGVINEVTDFCLNVAALEPPRSRTYMPAAFFSDVLEATPEEEGGGFKREGDIFRHCICRMEEVKNCAKNEREDGIAFREAVESVEKRALEYKEEIENREMHYAEQVEAKAEEVEENTKLLHKERVVFRSMVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARLAYLSYVLDHVAALRKGMEPMLKERQTERVRKLYRVRRTLQNLFSAAHESTNYLLQSIEADKVALQDDLAKLQRKYTNAGPTLQADMTTLREKVKEMTEQWQLHRQELEEMRSEHTEAKIDIALLLEDEAREALELGVMELEEDKEKGEDERKESDEAGAKGTKKSMWTFCVVM 667
[Close]
BLAST of EWM25992.1 vs. NCBI_GenBank
Match: gi|585107892|gb|EWM25991.1| (hypothetical protein Naga_100151g9 [Nannochloropsis gaditana])

HSP 1 Score: 1369.37 bits (3543), Expect = 0.000e+0
Identity = 667/668 (99.85%), Postives = 667/668 (99.85%), Query Frame = 0 
Query:    1 MHVHVMWKNAILTGTAPQKNAIRPTRDDCNEVPPIPQVWESPPRWEPRHMDTVSLGEKQEGGDANLPDLCPLPDASHQTTSPLVKTELPDDDKDDENKGKRDTGDGTDAGGDLCSPAFSSAASSPSSFSSLTTASKRRSKAVARASAVWNSLSRLSTPRTPASSAMASPSPSSSLSSSTSRRSCSASFYAARSGGGQGGSGEGKTTGMNEGEEGEEEELESVATQSPAPKGKMGGRGIREDTGVRTLRLVEEQEINPSEVESALDAVNVAAVYMGFQKGKEEGKEGRGEAGVVFPIEIAEGITSALQRLDDGGVINEVTDFCLNVAALEPPRSRTYMPAAFFSDVLEATPEEEGGGFKREGDIFRHCICRMEEVKNCAKNEREDGIAFREAVESVEKRALEYKEEIENREMHYAEQVEAKAEEVEENTKLLHKERVVFRSMVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARL-AYLSYVLDHVAALRKGMEPMLKERQTERVRKLYRVRRTLQNLFSAAHESTNYLLQSIEADKVALQDDLAKLQRKYTNAGPTLQADMTTLREKVKEMTEQWQLHRQELEEMRSEHTEAKIDIALLLEDEAREALELGVMELEEDKEKGEDERKESDEAGAKGTKKSMWTFCVVM 667
            MHVHVMWKNAILTGTAPQKNAIRPTRDDCNEVPPIPQVWESPPRWEPRHMDTVSLGEKQEGGDANLPDLCPLPDASHQTTSPLVKTELPDDDKDDENKGKRDTGDGTDAGGDLCSPAFSSAASSPSSFSSLTTASKRRSKAVARASAVWNSLSRLSTPRTPASSAMASPSPSSSLSSSTSRRSCSASFYAARSGGGQGGSGEGKTTGMNEGEEGEEEELESVATQSPAPKGKMGGRGIREDTGVRTLRLVEEQEINPSEVESALDAVNVAAVYMGFQKGKEEGKEGRGEAGVVFPIEIAEGITSALQRLDDGGVINEVTDFCLNVAALEPPRSRTYMPAAFFSDVLEATPEEEGGGFKREGDIFRHCICRMEEVKNCAKNEREDGIAFREAVESVEKRALEYKEEIENREMHYAEQVEAKAEEVEENTKLLHKERVVFRSMVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARL AYLSYVLDHVAALRKGMEPMLKERQTERVRKLYRVRRTLQNLFSAAHESTNYLLQSIEADKVALQDDLAKLQRKYTNAGPTLQADMTTLREKVKEMTEQWQLHRQELEEMRSEHTEAKIDIALLLEDEAREALELGVMELEEDKEKGEDERKESDEAGAKGTKKSMWTFCVVM
Sbjct:    1 MHVHVMWKNAILTGTAPQKNAIRPTRDDCNEVPPIPQVWESPPRWEPRHMDTVSLGEKQEGGDANLPDLCPLPDASHQTTSPLVKTELPDDDKDDENKGKRDTGDGTDAGGDLCSPAFSSAASSPSSFSSLTTASKRRSKAVARASAVWNSLSRLSTPRTPASSAMASPSPSSSLSSSTSRRSCSASFYAARSGGGQGGSGEGKTTGMNEGEEGEEEELESVATQSPAPKGKMGGRGIREDTGVRTLRLVEEQEINPSEVESALDAVNVAAVYMGFQKGKEEGKEGRGEAGVVFPIEIAEGITSALQRLDDGGVINEVTDFCLNVAALEPPRSRTYMPAAFFSDVLEATPEEEGGGFKREGDIFRHCICRMEEVKNCAKNEREDGIAFREAVESVEKRALEYKEEIENREMHYAEQVEAKAEEVEENTKLLHKERVVFRSMVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARLEAYLSYVLDHVAALRKGMEPMLKERQTERVRKLYRVRRTLQNLFSAAHESTNYLLQSIEADKVALQDDLAKLQRKYTNAGPTLQADMTTLREKVKEMTEQWQLHRQELEEMRSEHTEAKIDIALLLEDEAREALELGVMELEEDKEKGEDERKESDEAGAKGTKKSMWTFCVVM 668
[Close]
BLAST of EWM25992.1 vs. NCBI_GenBank
Match: gi|553188693|ref|XP_005854845.1| (hypothetical protein NGA_0367700 [Nannochloropsis gaditana CCMP526] >gi|422294212|gb|EKU21512.1| hypothetical protein NGA_0367700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 153.68 bits (387), Expect = 2.168e-40
Identity = 81/106 (76.42%), Postives = 81/106 (76.42%), Query Frame = 0 
Query:  441 MVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARL-------------------------AYLSYVLDHVAALRKGMEPMLKERQTE 521
            MVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARL                         AYLSYVLDHVAALRKGMEPMLKERQTE
Sbjct:    1 MVEEDFQFDENLREKLGEVFDAGVDANVALQASQSHLENLQELQALYGMVDARLGERTEREKKSGPVEHPIHVLAPTPDAYLSYVLDHVAALRKGMEPMLKERQTE 106
The following BLAST results are available for this feature:
BLAST of EWM25992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107893|gb|EWM25992.1|0.000e+0100.00hypothetical protein Naga_100151g9 [Nannochloropsi... [more]
gi|585107892|gb|EWM25991.1|0.000e+099.85hypothetical protein Naga_100151g9 [Nannochloropsi... [more]
gi|553188693|ref|XP_005854845.1|2.168e-4076.42hypothetical protein NGA_0367700 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4698rna4698Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications