EWM25987.1, cds4684 (CDS) Nannochloropsis gaditana

Overview
NameEWM25987.1
Unique Namecds4684
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:98116..98852 -
Alignment locationCM002464.1:97406..97982 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25987.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100151g10.9621.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:98116..98852 -
CM002464.1supercontigCM002464.1:97406..97982 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|585107888|gb|EWM25987.1| (hypothetical protein Naga_100151g10 [Nannochloropsis gaditana])

HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 MVLTASDKCCHKTRHPLSYSYWTEDPSLLQRYTGISSPLIINIHHLSLLNNSLLTLVDRVCRSHGPQEMVKSKNQQAVQATSSLLLPWGPAILLFSCVIPAHASSSIISDRRPLAASNLRFPDRPKALPPLLKASLRTVLPPFSRARRKKFTFPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVVAEDKE 437
            MVLTASDKCCHKTRHPLSYSYWTEDPSLLQRYTGISSPLIINIHHLSLLNNSLLTLVDRVCRSHGPQEMVKSKNQQAVQATSSLLLPWGPAILLFSCVIPAHASSSIISDRRPLAASNLRFPDRPKALPPLLKASLRTVLPPFSRARRKKFTFPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVVAEDKE
Sbjct:    1 MVLTASDKCCHKTRHPLSYSYWTEDPSLLQRYTGISSPLIINIHHLSLLNNSLLTLVDRVCRSHGPQEMVKSKNQQAVQATSSLLLPWGPAILLFSCVIPAHASSSIISDRRPLAASNLRFPDRPKALPPLLKASLRTVLPPFSRARRKKFTFPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVVAEDKE 437          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|553188706|ref|XP_005854849.1| (adhesin-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294216|gb|EKU21516.1| adhesin-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 384.8 bits (987), Expect = 1.134e-117
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:   69 MVKSKNQQAVQATSSLLLPWGPAILLFSCVIPAHASSSIISDRRPLAASNLRFPDRPKALPPLLKASLRTVLPPFSRARRKKFTFPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYR 246
            MVKSKNQQAVQATSSLLLPWGPAILLFSCVIPAHASSSIISDRRPLAASNLRFPDRPKALPPLLKASLRTVLPPFSRARRKKFTFPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYR
Sbjct:    1 MVKSKNQQAVQATSSLLLPWGPAILLFSCVIPAHASSSIISDRRPLAASNLRFPDRPKALPPLLKASLRTVLPPFSRARRKKFTFPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYR 178          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|298714009|emb|CBJ27241.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 121.709 bits (304), Expect = 5.744e-28
Identity = 78/244 (31.97%), Postives = 126/244 (51.64%), Query Frame = 0
Query:  199 EEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLL--LASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV-VAEDKE 437
            E+   W+ +Q+  YQ   AL +  L ++           G+K  E    P  ++ A        +CR++ E ++G K+VAPC C+GT KW+ F+ +N  RR++    + C TC   IDY  Y+ +G    + VS  L+++   R  +  LA+ V    L    L +L++RVLTS + W+ +     +V  PLPL+I+  +++        L  E  VR++L + ES +LE  LPVTV V ED +
Sbjct:   44 EKAVEWMMHQLCMYQTRTALISNPLAEK-----------GYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRVAIGVLATMVLW--LLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTVEVREDGD 274          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|873229953|emb|CEM11818.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 84.7297 bits (208), Expect = 3.696e-14
Identity = 52/171 (30.41%), Postives = 85/171 (49.71%), Query Frame = 0
Query:  259 PYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPV 429
            P  C I+ E + G K+  P   +GT KW+ F+ +N+ RR+DP   R+       +D+       S  A  VS  LD  +    L++ S   +  +    L  +++R+L S L+WR + LW+R +Y   P KI++ ++V              VR+ L + ES LL+ +LPV
Sbjct:  197 PKSCLINIEAEEGTKVAGP---KGTDKWVTFSQLNKYRRKDPQKLRDLWYGQYDVDFGPINELASTQALAVSAMLDSPVLIPSLVILSIAGALGVSAGALWAVLVRLLNSHLWWRSYGLWSRFLYVSAPFKILLGRWVYSSCRDVVKALADVVRDRLLDLESHLLQASLPV 364          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|223998522|ref|XP_002288934.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976042|gb|EED94370.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.7962 bits (190), Expect = 4.422e-12
Identity = 77/288 (26.74%), Postives = 122/288 (42.36%), Query Frame = 0
Query:  171 SLLACRGGST---GATPAQASTSPRNRTSEWEEDAAWL----TNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVE-----ASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKI---------DYQAYQRFGSVLAQLVSWPLD--HALTFRCLLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLW----SYFLRAEGAVRETLAEAESILLERALPVTV 431
            +LL+ RGGS+        +       R  + +++ + L    T Q L YQ      +E L  R   V   P   G    E  + P E+V+      +   P  C    + +   K+VAP    GT +W+  + +NR RR DP            I         +Y   Q  G     + S  LD  + +  R LL+ + + + VL +  L  ++ R++ S+ FW Q   W R+     PLK+++    GQL W    S F + E  VRE   + E  +LE ++P+TV
Sbjct:   67 TLLSIRGGSSLTQDENDNEGKEDAEVRKKQLQQEQSKLLKYRTEQQLLYQLRSTYLSEMLASRGVPV---PTVLGVATAEGNKVP-EMVDWDCAMCTYDEPKSCLYSFDAEPNTKVVAPI---GTDQWISLSALNRLRRTDPTKVEPMWHSRYAILQSWFSDTSEYSMLQYVGFKGFVISSVLLDGGNGMILRSLLILTVLSALVLVMPLLEFIIGRIIVSAPFWAQWQTWGRIARAGFPLKLLL----GQLAWKGIASSFGKMESEVREFFVDMECEILEESVPLTV 343          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|1210526022|dbj|GAX14940.1| (hypothetical protein FisN_12Lh357 [Fistulifera solaris])

HSP 1 Score: 72.4034 bits (176), Expect = 2.353e-10
Identity = 63/241 (26.14%), Postives = 106/241 (43.98%), Query Frame = 0
Query:  213 QAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEI----VEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKI----------DYQAYQRF---GSVLAQLVSWPL--DHALTFRC--LLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVV 432
            Q  + L + +L  R A++     +F  +H E  +    +      A+  HP  C    + + G+K++AP     T +W+  + +NR RR DP            I           Y  Y      G+ L+ L+  PL    ++   C  L LA+F F           L+ R+LTS + W  +  WAR     LPLK+++ +   + L + F +  G +R  L E E  LLE+++P+T++
Sbjct:   84 QQQLYLQSRSLQLRQALIQRGVLEF--QHTESSQVAQNVDWDCALATADHPKSCLFSFDAEEGSKVIAPI---DTQQWITLSALNRLRRNDPTKVEPLWHSQYNILQTWFHPNKSPYSLYTHLSPVGTFLSCLLDAPLLLGASMILACTFLFLATFPF--------WEWLIKRILTSHIMWINYHQWARFTRAALPLKLLLGQMAWKGLANVFGQIYGKIRTYLVEIECQLLEQSIPLTIL 311          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|219126665|ref|XP_002183572.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404809|gb|EEC44754.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.0922 bits (170), Expect = 1.458e-9
Identity = 78/295 (26.44%), Postives = 124/295 (42.03%), Query Frame = 0
Query:  153 FPGADSLLPSTSCSFPVPSLLACRGGSTGATPAQASTSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEAL-GKRHAVVGHTPFDFGFKHEEKYRPPLE--IVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQ--------RFGSVLAQLVSWPLDHALTFRCLLLASFVFSSVLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLW----SYFLRAEGAVRETLAEAESILLERALPVTVV 432
            F  A S   S S + P   L   RGG+   T + A++         ++ +A+ T Q L  Q+   L  +AL G+    + H          +K   P++     A+  HP  C    + + GAK++AP     T  W+  A +NR RR DP            I    +          + + L   VS+ LD  L     LL   + S+++ +     L   ++T  + W+Q   W R V+  LPLK+++    GQ+ W      F R  G VR  L + E  +LE  +PVT++
Sbjct:   23 FGAAHSRTSSLSVNLP---LRLARGGALKTTTSTANSK--------DDVSAYRTRQQLYLQSRSLLLRQALIGRGLDALDHDAGGGDEGGAKKRAKPVDWDCAVATEAHPKSCLYSFDAETGAKVLAPL---DTTHWITLAALNRLRRTDPTKVEPLWHSQYNILSTWWHPSHVFSLYTYLTPLGAFVSFLLDSPLLLASTLLGFVLLSALVTLPVWEHLAQIIVTHPVIWQQWPSWGRFVHAALPLKLLL----GQMAWKAVAQVFGRLYGRVRTHLIDWECQILETCIPVTIL 299          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|1210517522|dbj|GAX23779.1| (hypothetical protein FisN_12Hh357 [Fistulifera solaris])

HSP 1 Score: 65.4698 bits (158), Expect = 4.824e-8
Identity = 54/193 (27.98%), Postives = 87/193 (45.08%), Query Frame = 0
Query:  254 ASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKI----------DYQAYQRF---GSVLAQLVSWPLDHALTFRCLLLASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVV 432
            A+  +P  C    + + G K++AP     T +W+  + +NR RR DP            I           Y  Y      G+ L+ L+  PL    T   +L  +F+F +     P    L+ R+LTS + W  +  WAR     LPLK+++ +   + L + F +  G +R  L E E   LE+A+P+T+V
Sbjct:  143 ATAENPKSCLFSFDAEEGCKVIAPI---DTQQWITLSALNRLRRNDPTKVEPLWHSQYNILQTWFHPNKSPYSLYTHLSPVGTFLSCLLDAPLLLGATI--ILACTFLFLATF---PFWEWLIKRILTSHIMWINYHQWARFTRAALPLKLLLGQMAWKGLANVFGQIYGKIRTYLVEIECQQLEQAIPLTIV 327          
BLAST of EWM25987.1 vs. NCBI_GenBank
Match: gi|397633762|gb|EJK71120.1| (hypothetical protein THAOC_07470, partial [Thalassiosira oceanica])

HSP 1 Score: 64.3142 bits (155), Expect = 1.685e-7
Identity = 64/256 (25.00%), Postives = 105/256 (41.02%), Query Frame = 0
Query:  206 TNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEI----VEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLL---LASFVFSSVL-----------------------FVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV 431
            T+Q L YQ       E L  R   +   P        +  +PP ++      ++   P  C    + +   K+VAP    GT +W+    +NR RR DP           K++   + ++G     L SW  D +  F  L    +  F  SSVL                       F+  +   V R+L S+ FW + + W R+     PLK+++ +YV + +   F + E  VRE + + E  +LE ++P+TV
Sbjct:  241 TDQQLLYQLRSTYLTEMLAARGVPL---PTIISVSTPDGEKPPEKVDWDCALSTDEEPKSCLYSFDAEPDTKVVAPL---GTDQWISLTALNRLRRTDP----------TKVEPMWHSQYGV----LQSWFADSS-EFSLLQHVGIKGFFVSSVLLDGGNGMALRSLLVLSVLSLLILFMPLIEYTVQRILVSAPFWNRWTFWGRIARAGFPLKLLIGQYVWKAVALAFRKLENEVREFVVDLECEILEDSVPITV 475          
The following BLAST results are available for this feature:
BLAST of EWM25987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585107888|gb|EWM25987.1|0.000e+0100.00hypothetical protein Naga_100151g10 [Nannochlorops... [more]
gi|553188706|ref|XP_005854849.1|1.134e-117100.00adhesin-like protein, partial [Nannochloropsis gad... [more]
gi|298714009|emb|CBJ27241.1|5.744e-2831.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|873229953|emb|CEM11818.1|3.696e-1430.41unnamed protein product [Vitrella brassicaformis C... [more]
gi|223998522|ref|XP_002288934.1|4.422e-1226.74predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210526022|dbj|GAX14940.1|2.353e-1026.14hypothetical protein FisN_12Lh357 [Fistulifera sol... [more]
gi|219126665|ref|XP_002183572.1|1.458e-926.44predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210517522|dbj|GAX23779.1|4.824e-827.98hypothetical protein FisN_12Hh357 [Fistulifera sol... [more]
gi|397633762|gb|EJK71120.1|1.685e-725.00hypothetical protein THAOC_07470, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4696rna4696Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications