EWM26001.1, cds4671 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|585107913|gb|EWM26001.1| (elav-like protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 457.603 bits (1176), Expect = 1.022e-162 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query: 1 MSEPPSADTSAASQEAGAATATSNGTPAPNPAPASAPAPPGHYQSVGPGWGFIVPEGGGGEANASSATPGNDTDASKGWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTDRTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSLPPSLPTSLPASP 228
MSEPPSADTSAASQEAGAATATSNGTPAPNPAPASAPAPPGHYQSVGPGWGFIVPEGGGGEANASSATPGNDTDASKGWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTDRTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSLPPSLPTSLPASP
Sbjct: 1 MSEPPSADTSAASQEAGAATATSNGTPAPNPAPASAPAPPGHYQSVGPGWGFIVPEGGGGEANASSATPGNDTDASKGWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTDRTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSLPPSLPTSLPASP 228
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054243|ref|XP_013409071.1| (PREDICTED: ELAV-like protein 3 isoform X6 [Lingula anatina]) HSP 1 Score: 115.931 bits (289), Expect = 4.260e-27 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 7 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 147
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054245|ref|XP_013409072.1| (PREDICTED: ELAV-like protein 3 isoform X7 [Lingula anatina]) HSP 1 Score: 115.931 bits (289), Expect = 4.951e-27 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 6 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 146
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054233|ref|XP_013409066.1| (PREDICTED: ELAV-like protein 3 isoform X2 [Lingula anatina]) HSP 1 Score: 116.316 bits (290), Expect = 6.561e-27 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 59 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 199
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054237|ref|XP_013409068.1| (PREDICTED: ELAV-like protein 3 isoform X4 [Lingula anatina]) HSP 1 Score: 115.546 bits (288), Expect = 1.077e-26 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 51 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 191
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054239|ref|XP_013409069.1| (PREDICTED: ELAV-like protein 3 isoform X5 [Lingula anatina] >gi|919054241|ref|XP_013409070.1| PREDICTED: ELAV-like protein 3 isoform X5 [Lingula anatina]) HSP 1 Score: 115.546 bits (288), Expect = 1.084e-26 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 34 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 174
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054235|ref|XP_013409067.1| (PREDICTED: ELAV-like protein 3 isoform X3 [Lingula anatina]) HSP 1 Score: 115.546 bits (288), Expect = 1.395e-26 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 63 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 203
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054225|ref|XP_013409061.1| (PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina] >gi|919054227|ref|XP_013409063.1| PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina] >gi|919054229|ref|XP_013409064.1| PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina] >gi|919054231|ref|XP_013409065.1| PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina]) HSP 1 Score: 115.546 bits (288), Expect = 1.406e-26 Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
G + GP + Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 63 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 203
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054247|ref|XP_013409074.1| (PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054249|ref|XP_013409075.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054251|ref|XP_013409076.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054253|ref|XP_013409077.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054255|ref|XP_013409078.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054257|ref|XP_013409079.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina]) HSP 1 Score: 113.235 bits (282), Expect = 3.584e-26 Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 0
Query: 90 QATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
Q V G +G + G+ D RTNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK P AD AI T NG ++ K IKVSVARP+ E K LY++ LP L
Sbjct: 6 QNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 134
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|239938028|gb|ACS36113.1| (RNA-binding protein Elav1, partial [Capitella teleta]) HSP 1 Score: 105.531 bits (262), Expect = 2.678e-25 Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 0
Query: 115 RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLP 210
+TNLIVNYLP + +R LF G+VES ++IR+K +G+SLGYGFV YK + A AI + NG ++ K IKVSVARP+SE K LY++ LP
Sbjct: 27 KTNLIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQSLGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVSVARPSSESIKGANLYISGLP 122 The following BLAST results are available for this feature:
BLAST of EWM26001.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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