EWM26001.1, cds4671 (CDS) Nannochloropsis gaditana

Overview
NameEWM26001.1
Unique Namecds4671
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:57102..57169 -
Alignment locationCM002464.1:56852..56966 -
Alignment locationCM002464.1:56425..56640 -
Alignment locationCM002464.1:56065..56154 -
Alignment locationCM002464.1:55876..55950 -
Alignment locationCM002464.1:55612..55734 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26001.1
Productelav-like protein 2
Orig transcript idgnl|cribi|Naga_101094g1.10502.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:57102..57169 -
CM002464.1supercontigCM002464.1:56852..56966 -
CM002464.1supercontigCM002464.1:56425..56640 -
CM002464.1supercontigCM002464.1:56065..56154 -
CM002464.1supercontigCM002464.1:55876..55950 -
CM002464.1supercontigCM002464.1:55612..55734 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Biological Process
TermDefinition
GO:0009908flower development
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR031096FCA
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
IPR002343Hud_Sxl_RNA
Homology
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|585107913|gb|EWM26001.1| (elav-like protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 457.603 bits (1176), Expect = 1.022e-162
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:    1 MSEPPSADTSAASQEAGAATATSNGTPAPNPAPASAPAPPGHYQSVGPGWGFIVPEGGGGEANASSATPGNDTDASKGWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTDRTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSLPPSLPTSLPASP 228
            MSEPPSADTSAASQEAGAATATSNGTPAPNPAPASAPAPPGHYQSVGPGWGFIVPEGGGGEANASSATPGNDTDASKGWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTDRTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSLPPSLPTSLPASP
Sbjct:    1 MSEPPSADTSAASQEAGAATATSNGTPAPNPAPASAPAPPGHYQSVGPGWGFIVPEGGGGEANASSATPGNDTDASKGWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTDRTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSLPPSLPTSLPASP 228          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054243|ref|XP_013409071.1| (PREDICTED: ELAV-like protein 3 isoform X6 [Lingula anatina])

HSP 1 Score: 115.931 bits (289), Expect = 4.260e-27
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:    7 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 147          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054245|ref|XP_013409072.1| (PREDICTED: ELAV-like protein 3 isoform X7 [Lingula anatina])

HSP 1 Score: 115.931 bits (289), Expect = 4.951e-27
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:    6 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 146          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054233|ref|XP_013409066.1| (PREDICTED: ELAV-like protein 3 isoform X2 [Lingula anatina])

HSP 1 Score: 116.316 bits (290), Expect = 6.561e-27
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:   59 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 199          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054237|ref|XP_013409068.1| (PREDICTED: ELAV-like protein 3 isoform X4 [Lingula anatina])

HSP 1 Score: 115.546 bits (288), Expect = 1.077e-26
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:   51 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 191          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054239|ref|XP_013409069.1| (PREDICTED: ELAV-like protein 3 isoform X5 [Lingula anatina] >gi|919054241|ref|XP_013409070.1| PREDICTED: ELAV-like protein 3 isoform X5 [Lingula anatina])

HSP 1 Score: 115.546 bits (288), Expect = 1.084e-26
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:   34 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 174          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054235|ref|XP_013409067.1| (PREDICTED: ELAV-like protein 3 isoform X3 [Lingula anatina])

HSP 1 Score: 115.546 bits (288), Expect = 1.395e-26
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:   63 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 203          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054225|ref|XP_013409061.1| (PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina] >gi|919054227|ref|XP_013409063.1| PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina] >gi|919054229|ref|XP_013409064.1| PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina] >gi|919054231|ref|XP_013409065.1| PREDICTED: ELAV-like protein 3 isoform X1 [Lingula anatina])

HSP 1 Score: 115.546 bits (288), Expect = 1.406e-26
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 0
Query:   78 GWGEHGPSQAPQQATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            G  + GP +   Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:   63 GSQQEGPMENGGQNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 203          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|919054247|ref|XP_013409074.1| (PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054249|ref|XP_013409075.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054251|ref|XP_013409076.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054253|ref|XP_013409077.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054255|ref|XP_013409078.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina] >gi|919054257|ref|XP_013409079.1| PREDICTED: ELAV-like protein 3 isoform X8 [Lingula anatina])

HSP 1 Score: 113.235 bits (282), Expect = 3.584e-26
Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 0
Query:   90 QATVSAAGAGGKAGGSTYSGEGTTD--RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHVRPSL 216
            Q  V     G  +G  +    G+ D  RTNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK P  AD AI T NG ++  K IKVSVARP+ E  K   LY++ LP     L
Sbjct:    6 QNMVQVQQNGNLSGSHSPIMTGSIDDSRTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKTTGQSLGYGFVNYKSPDDADKAISTLNGLRLQNKTIKVSVARPSCESIKGANLYISGLPKTMTQL 134          
BLAST of EWM26001.1 vs. NCBI_GenBank
Match: gi|239938028|gb|ACS36113.1| (RNA-binding protein Elav1, partial [Capitella teleta])

HSP 1 Score: 105.531 bits (262), Expect = 2.678e-25
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 0
Query:  115 RTNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLP 210
            +TNLIVNYLP  +    +R LF   G+VES ++IR+K +G+SLGYGFV YK  + A  AI + NG ++  K IKVSVARP+SE  K   LY++ LP
Sbjct:   27 KTNLIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQSLGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVSVARPSSESIKGANLYISGLP 122          
The following BLAST results are available for this feature:
BLAST of EWM26001.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107913|gb|EWM26001.1|1.022e-162100.00elav-like protein 2 [Nannochloropsis gaditana][more]
gi|919054243|ref|XP_013409071.1|4.260e-2744.68PREDICTED: ELAV-like protein 3 isoform X6 [Lingula... [more]
gi|919054245|ref|XP_013409072.1|4.951e-2744.68PREDICTED: ELAV-like protein 3 isoform X7 [Lingula... [more]
gi|919054233|ref|XP_013409066.1|6.561e-2744.68PREDICTED: ELAV-like protein 3 isoform X2 [Lingula... [more]
gi|919054237|ref|XP_013409068.1|1.077e-2644.68PREDICTED: ELAV-like protein 3 isoform X4 [Lingula... [more]
gi|919054239|ref|XP_013409069.1|1.084e-2644.68PREDICTED: ELAV-like protein 3 isoform X5 [Lingula... [more]
gi|919054235|ref|XP_013409067.1|1.395e-2644.68PREDICTED: ELAV-like protein 3 isoform X3 [Lingula... [more]
gi|919054225|ref|XP_013409061.1|1.406e-2644.68PREDICTED: ELAV-like protein 3 isoform X1 [Lingula... [more]
gi|919054247|ref|XP_013409074.1|3.584e-2646.51PREDICTED: ELAV-like protein 3 isoform X8 [Lingula... [more]
gi|239938028|gb|ACS36113.1|2.678e-2552.08RNA-binding protein Elav1, partial [Capitella tele... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4683rna4683Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications