EWM30249.1, cds464 (CDS) Nannochloropsis gaditana

Overview
NameEWM30249.1
Unique Namecds464
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1161496..1161501 +
Alignment locationCM002455.1:1161560..1161733 +
Alignment locationCM002455.1:1162015..1162176 +
Alignment locationCM002455.1:1162327..1162493 +
Alignment locationCM002455.1:1162659..1162954 +
Alignment locationCM002455.1:1163167..1163330 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30249.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g11.1766.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1161496..1161501 +
CM002455.1supercontigCM002455.1:1161560..1161733 +
CM002455.1supercontigCM002455.1:1162015..1162176 +
CM002455.1supercontigCM002455.1:1162327..1162493 +
CM002455.1supercontigCM002455.1:1162659..1162954 +
CM002455.1supercontigCM002455.1:1163167..1163330 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30249.1 vs. NCBI_GenBank
Match: gi|585112908|gb|EWM30249.1| (hypothetical protein Naga_100003g11 [Nannochloropsis gaditana])

HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MGFNAQPSNTLERHNDHHCPSEARLLLLAMLRVGTLLALGCSLLGTNAFTFPSMSCNVFQRHEKNAMKVSEALYRADVFRFAGSAFVGAALLIGRPEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKGDLKPPKKDGGFLGFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNKVRGTALSIDKIHMCVFVYLLCIAKYQPVIENSGVSIAARHNLPSSSEAKPLDEK 322
            MGFNAQPSNTLERHNDHHCPSEARLLLLAMLRVGTLLALGCSLLGTNAFTFPSMSCNVFQRHEKNAMKVSEALYRADVFRFAGSAFVGAALLIGRPEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKGDLKPPKKDGGFLGFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNKVRGTALSIDKIHMCVFVYLLCIAKYQPVIENSGVSIAARHNLPSSSEAKPLDEK
Sbjct:    1 MGFNAQPSNTLERHNDHHCPSEARLLLLAMLRVGTLLALGCSLLGTNAFTFPSMSCNVFQRHEKNAMKVSEALYRADVFRFAGSAFVGAALLIGRPEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKGDLKPPKKDGGFLGFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNKVRGTALSIDKIHMCVFVYLLCIAKYQPVIENSGVSIAARHNLPSSSEAKPLDEK 322          
BLAST of EWM30249.1 vs. NCBI_GenBank
Match: gi|922856900|gb|KOO25208.1| (hypothetical protein Ctob_012426 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.8777 bits (198), Expect = 1.856e-14
Identity = 59/183 (32.24%), Postives = 88/183 (48.09%), Query Frame = 0
Query:   99 SEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKGDLKPPKKDGGFLGFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNKVRGTALS-IDKIH 280
            S AE TL +R+  Y RY PRI+  RDF A   +  +   DWAA+   +E         +  N    I KF    + PMR+++ S S K  S K  A+ +A  EL  A + LQ+ A G +    KD G   F GG    D+    ++ K+A+  +     AFN ++E+ N   G + + +D I 
Sbjct:   47 SFAEATLVTRQQAYTRYVPRIERGRDFWAGGLRKYIASSDWAAIQREFE--------PLGKNKGGAIPKF----FGPMRLYASSFSSKTISDKTLAMEEAVDELAEAANGLQIAADGTI----KDTGLFSFLGGKKTMDEG---SRSKLAQDAYKKGVLAFNKYIEISNDGLGISFAPMDTID 210          
BLAST of EWM30249.1 vs. NCBI_GenBank
Match: gi|551661533|ref|XP_005833533.1| (hypothetical protein GUITHDRAFT_152403 [Guillardia theta CCMP2712] >gi|428177674|gb|EKX46553.1| hypothetical protein GUITHDRAFT_152403 [Guillardia theta CCMP2712])

HSP 1 Score: 75.485 bits (184), Expect = 5.802e-12
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 0
Query:   96 PEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINK--FEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQ 210
            P+ S A+ TL S K  YFRYAPRI+  RDF   + ++ ++K +W  +A+ YE+   A + S + +    I +   E+ L+ PM++F  S  EKG  PK   +     EL  A D+++
Sbjct:   87 PQNSFADMTLNSFKRAYFRYAPRIEEGRDFFVLEVRSLIEKGEWDKIASLYELTSVAQEGSSKKSIGLDIKQSALERTLFLPMQVFITSFEEKGTGPKQRKMNAQVDELILACDKIK 203          
BLAST of EWM30249.1 vs. NCBI_GenBank
Match: gi|873228229|emb|CEM16218.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 66.6254 bits (161), Expect = 2.719e-9
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 0
Query:   96 PEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKG 215
            P  + A+  L S K  YFRY PRI+  RD    D + A++ ++W AV + +E+         R N   + + +   L  PM I+S S SEKG   +   L     E E ALD++ + + G
Sbjct:   38 PSTAAADIDLMSAKRSYFRYVPRIEKGRDMYVLDLRPAIESENWQAVQSFFEV---------RKNDNTYASYY---LTRPMEIWSTSFSEKGTGDRTKQLQSIAKEFEDALDKINVASGG 145          
BLAST of EWM30249.1 vs. NCBI_GenBank
Match: gi|299116434|emb|CBN74699.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 59.3066 bits (142), Expect = 3.080e-7
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 0
Query:  129 DFKAALDKKDWAAVAAAYEIEKQA-PDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKG-DLKPPKKDGGFLGFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNKVRGTALSIDKI 279
            D + A+ ++DW  V A +E+   A  DSS     Q   ++ +++L+SP+ +++QS+S KG   KL ALL  E +LE A+  L+  A G  LK                      G +Q + AKA +   + A   +VEV NK  G   S+ KI
Sbjct:    7 DLQKAIAEEDWPKVLAYFEVVNTARSDSSRPAMYQSSSSRMQRELFSPLSVWAQSMSIKGTGAKLRALLSQEEKLEQAMASLEKAASGKSLKE---------------------GESQGQAAKAAWEAGRDALQEYVEVANK--GMVRSLRKI 136          
The following BLAST results are available for this feature:
BLAST of EWM30249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585112908|gb|EWM30249.1|0.000e+0100.00hypothetical protein Naga_100003g11 [Nannochlorops... [more]
gi|922856900|gb|KOO25208.1|1.856e-1432.24hypothetical protein Ctob_012426 [Chrysochromulina... [more]
gi|551661533|ref|XP_005833533.1|5.802e-1235.04hypothetical protein GUITHDRAFT_152403 [Guillardia... [more]
gi|873228229|emb|CEM16218.1|2.719e-932.50unnamed protein product [Vitrella brassicaformis C... [more]
gi|299116434|emb|CBN74699.1|3.080e-732.03expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna464rna464Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications