EWM26043.1, cds4629 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|585107980|gb|EWM26043.1| (60s ribosomal protein l23, partial [Nannochloropsis gaditana]) HSP 1 Score: 324.709 bits (831), Expect = 2.562e-112 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MAGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRLPPSLPPSLPSVLPPFLPFPLLPFIHAFVIPLLSAFLCHWCPGASPGFDSEIFYLRPSLPPSLP 162 MAGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRLPPSLPPSLPSVLPPFLPFPLLPFIHAFVIPLLSAFLCHWCPGASPGFDSEIFYLRPSLPPSLP Sbjct: 1 MAGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRLPPSLPPSLPSVLPPFLPFPLLPFIHAFVIPLLSAFLCHWCPGASPGFDSEIFYLRPSLPPSLP 162
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|1072223157|gb|OEU07914.1| (Ribosomal_L23-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 127.487 bits (319), Expect = 9.189e-35 Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 0 Query: 5 ADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 A KA AV LKKG+S + TR+HT VHFY+PKTLK RKPKYA+K+VP +D + +I+YPLTTES+MK IED+NTLVFIVD+ ANKRQIK Sbjct: 4 AGKASAVANALKKGISKKGTRIHTGVHFYKPKTLKAARKPKYAKKSVPKKAGLDSFSIIKYPLTTESSMKLIEDSNTLVFIVDIKANKRQIK 95
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|695381843|ref|XP_009517215.1| (hypothetical protein PHYSODRAFT_353704 [Phytophthora sojae] >gi|348690126|gb|EGZ29940.1| hypothetical protein PHYSODRAFT_353704 [Phytophthora sojae]) HSP 1 Score: 122.094 bits (305), Expect = 1.561e-32 Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 0 Query: 2 AGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 AGKA A V K + KG + ++ TKVHFY+PKTL+L R P+YARK+VP K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK Sbjct: 10 AGKA--AAKVSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKSVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 102
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|1214709988|gb|OWZ21119.1| (60S ribosomal protein L23a [Phytophthora megakarya]) HSP 1 Score: 120.553 bits (301), Expect = 6.799e-32 Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0 Query: 2 AGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 AGK+ A + K + KG + ++ TKVHFY+PKTL+L R P+YARKAVP K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK Sbjct: 12 AGKS--AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|470423489|ref|XP_004337603.1| (ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] >gi|440794429|gb|ELR15590.1| ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 122.094 bits (305), Expect = 9.307e-32 Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 0 Query: 3 GKADKAKA----VGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 G+A +A++ + KT+KKG + R +V T VHF+RPKTL+L R PKY R++VP K+D++R++R+PLTTESAMKKIEDNNTLVFIVDL ANKRQIK Sbjct: 67 GQAAQARSKALKLQKTIKKGATKRVRKVRTNVHFFRPKTLRLPRNPKYPRRSVPRTNKLDQFRVLRHPLTTESAMKKIEDNNTLVFIVDLKANKRQIK 164
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|953497784|emb|CEG40544.1| (60s ribosomal protein l23a [Plasmopara halstedii]) HSP 1 Score: 119.783 bits (299), Expect = 1.393e-31 Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 0 Query: 2 AGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 AGK+ A + K + KG + ++ TKVHFY+PKTLKL R P YARKAVP K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK Sbjct: 12 AGKS--AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLKLARSPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|675176739|ref|XP_008897254.1| (60S ribosomal protein L23a [Phytophthora parasitica INRA-310] >gi|566011133|gb|ETI34044.1| 60S ribosomal protein L23a [Phytophthora parasitica P1569] >gi|567948660|gb|ETK74402.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|567977331|gb|ETL27836.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|568006835|gb|ETL81083.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|568036671|gb|ETM34275.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|568103054|gb|ETN17725.1| 60S ribosomal protein L23a [Phytophthora parasitica INRA-310] >gi|570314902|gb|ETO62850.1| 60S ribosomal protein L23a [Phytophthora parasitica P1976] >gi|570938677|gb|ETP03934.1| 60S ribosomal protein L23a [Phytophthora parasitica CJ01A1] >gi|570968970|gb|ETP32089.1| 60S ribosomal protein L23a [Phytophthora parasitica P10297] >gi|970643846|gb|KUF84940.1| 60S ribosomal protein L23a [Phytophthora nicotianae] >gi|970657686|gb|KUF95540.1| hypothetical protein AM588_10009708 [Phytophthora nicotianae]) HSP 1 Score: 117.087 bits (292), Expect = 1.425e-30 Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 0 Query: 17 KGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 KG + ++ TKVHFY+PKTLKL R P YARKAVP K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK Sbjct: 25 KGSHGKVLKIRTKVHFYKPKTLKLARAPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|301119741|ref|XP_002907598.1| (60S ribosomal protein L23a [Phytophthora infestans T30-4] >gi|262106110|gb|EEY64162.1| 60S ribosomal protein L23a [Phytophthora infestans T30-4]) HSP 1 Score: 116.316 bits (290), Expect = 3.510e-30 Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0 Query: 17 KGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 KG + ++ TKVHFY+PKTL+L R P YARKAVP K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK Sbjct: 25 KGSHGKVLKIRTKVHFYKPKTLRLARAPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|224003741|ref|XP_002291542.1| (RL23a, ribosomal protein 23a 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220973318|gb|EED91649.1| RL23a, ribosomal protein 23a 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 115.546 bits (288), Expect = 5.595e-30 Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0 Query: 24 TRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96 TR+HTKVHFYR +TL L+RKPKYAR++VP +DKY +I+YPLTTES+MK IED+NTLVFIVD+ ANKRQIK Sbjct: 24 TRIHTKVHFYRTQTLSLERKPKYARRSVPRKSTVDKYSIIKYPLTTESSMKLIEDSNTLVFIVDIKANKRQIK 96
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|972237656|emb|CEL04327.1| (Putative 60S ribosomal protein L23 (AFU_orthologue; AFUA_5G05630) [Aspergillus calidoustus]) HSP 1 Score: 113.62 bits (283), Expect = 3.423e-29 Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 0 Query: 5 ADKAKAVGKTLKKGVSTRKTR-VHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRL 99 +DKA A K + KG KTR + T F+RPKTL+L R PKY RK++PHL + D +++I YPL TESAMKKIE+NNTLVFIVD+ ANKRQIK L Sbjct: 14 SDKAGAAAKAVLKGAGAHKTRKIRTSTTFHRPKTLQLSRSPKYPRKSIPHLPRFDAHKVILYPLNTESAMKKIEENNTLVFIVDVKANKRQIKAAL 109 The following BLAST results are available for this feature:
BLAST of EWM26043.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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