EWM26043.1, cds4629 (CDS) Nannochloropsis gaditana

Overview
NameEWM26043.1
Unique Namecds4629
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1126562..1126696 -
Alignment locationCM002463.1:1126243..1126315 -
Alignment locationCM002463.1:1125859..1126137 -

Link to JBrowse

Properties
Property NameValue
Start range1125859
Start range.
Protein idEWM26043.1
Product60s ribosomal protein l23
Partialtrue
Orig transcript idgnl|cribi|Naga_101283g2.2820.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1126562..1126696 -
CM002463.1supercontigCM002463.1:1126243..1126315 -
CM002463.1supercontigCM002463.1:1125859..1126137 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom
IPR012677Nucleotide-bd_a/b_plait
IPR013025Ribosomal_L25/23
IPR005633Ribosomal_L23/L25_N
Homology
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|585107980|gb|EWM26043.1| (60s ribosomal protein l23, partial [Nannochloropsis gaditana])

HSP 1 Score: 324.709 bits (831), Expect = 2.562e-112
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MAGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRLPPSLPPSLPSVLPPFLPFPLLPFIHAFVIPLLSAFLCHWCPGASPGFDSEIFYLRPSLPPSLP 162
            MAGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRLPPSLPPSLPSVLPPFLPFPLLPFIHAFVIPLLSAFLCHWCPGASPGFDSEIFYLRPSLPPSLP
Sbjct:    1 MAGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRLPPSLPPSLPSVLPPFLPFPLLPFIHAFVIPLLSAFLCHWCPGASPGFDSEIFYLRPSLPPSLP 162          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|1072223157|gb|OEU07914.1| (Ribosomal_L23-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 127.487 bits (319), Expect = 9.189e-35
Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 0
Query:    5 ADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            A KA AV   LKKG+S + TR+HT VHFY+PKTLK  RKPKYA+K+VP    +D + +I+YPLTTES+MK IED+NTLVFIVD+ ANKRQIK
Sbjct:    4 AGKASAVANALKKGISKKGTRIHTGVHFYKPKTLKAARKPKYAKKSVPKKAGLDSFSIIKYPLTTESSMKLIEDSNTLVFIVDIKANKRQIK 95          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|695381843|ref|XP_009517215.1| (hypothetical protein PHYSODRAFT_353704 [Phytophthora sojae] >gi|348690126|gb|EGZ29940.1| hypothetical protein PHYSODRAFT_353704 [Phytophthora sojae])

HSP 1 Score: 122.094 bits (305), Expect = 1.561e-32
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 0
Query:    2 AGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            AGKA  A  V K + KG   +  ++ TKVHFY+PKTL+L R P+YARK+VP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK
Sbjct:   10 AGKA--AAKVSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKSVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 102          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|1214709988|gb|OWZ21119.1| (60S ribosomal protein L23a [Phytophthora megakarya])

HSP 1 Score: 120.553 bits (301), Expect = 6.799e-32
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0
Query:    2 AGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            AGK+  A  + K + KG   +  ++ TKVHFY+PKTL+L R P+YARKAVP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK
Sbjct:   12 AGKS--AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|470423489|ref|XP_004337603.1| (ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] >gi|440794429|gb|ELR15590.1| ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 122.094 bits (305), Expect = 9.307e-32
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 0
Query:    3 GKADKAKA----VGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            G+A +A++    + KT+KKG + R  +V T VHF+RPKTL+L R PKY R++VP   K+D++R++R+PLTTESAMKKIEDNNTLVFIVDL ANKRQIK
Sbjct:   67 GQAAQARSKALKLQKTIKKGATKRVRKVRTNVHFFRPKTLRLPRNPKYPRRSVPRTNKLDQFRVLRHPLTTESAMKKIEDNNTLVFIVDLKANKRQIK 164          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|953497784|emb|CEG40544.1| (60s ribosomal protein l23a [Plasmopara halstedii])

HSP 1 Score: 119.783 bits (299), Expect = 1.393e-31
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 0
Query:    2 AGKADKAKAVGKTLKKGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            AGK+  A  + K + KG   +  ++ TKVHFY+PKTLKL R P YARKAVP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK
Sbjct:   12 AGKS--AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLKLARSPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|675176739|ref|XP_008897254.1| (60S ribosomal protein L23a [Phytophthora parasitica INRA-310] >gi|566011133|gb|ETI34044.1| 60S ribosomal protein L23a [Phytophthora parasitica P1569] >gi|567948660|gb|ETK74402.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|567977331|gb|ETL27836.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|568006835|gb|ETL81083.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|568036671|gb|ETM34275.1| 60S ribosomal protein L23a [Phytophthora parasitica] >gi|568103054|gb|ETN17725.1| 60S ribosomal protein L23a [Phytophthora parasitica INRA-310] >gi|570314902|gb|ETO62850.1| 60S ribosomal protein L23a [Phytophthora parasitica P1976] >gi|570938677|gb|ETP03934.1| 60S ribosomal protein L23a [Phytophthora parasitica CJ01A1] >gi|570968970|gb|ETP32089.1| 60S ribosomal protein L23a [Phytophthora parasitica P10297] >gi|970643846|gb|KUF84940.1| 60S ribosomal protein L23a [Phytophthora nicotianae] >gi|970657686|gb|KUF95540.1| hypothetical protein AM588_10009708 [Phytophthora nicotianae])

HSP 1 Score: 117.087 bits (292), Expect = 1.425e-30
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 0
Query:   17 KGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            KG   +  ++ TKVHFY+PKTLKL R P YARKAVP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK
Sbjct:   25 KGSHGKVLKIRTKVHFYKPKTLKLARAPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|301119741|ref|XP_002907598.1| (60S ribosomal protein L23a [Phytophthora infestans T30-4] >gi|262106110|gb|EEY64162.1| 60S ribosomal protein L23a [Phytophthora infestans T30-4])

HSP 1 Score: 116.316 bits (290), Expect = 3.510e-30
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0
Query:   17 KGVSTRKTRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            KG   +  ++ TKVHFY+PKTL+L R P YARKAVP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK
Sbjct:   25 KGSHGKVLKIRTKVHFYKPKTLRLARAPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIK 104          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|224003741|ref|XP_002291542.1| (RL23a, ribosomal protein 23a 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220973318|gb|EED91649.1| RL23a, ribosomal protein 23a 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 115.546 bits (288), Expect = 5.595e-30
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0
Query:   24 TRVHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK 96
            TR+HTKVHFYR +TL L+RKPKYAR++VP    +DKY +I+YPLTTES+MK IED+NTLVFIVD+ ANKRQIK
Sbjct:   24 TRIHTKVHFYRTQTLSLERKPKYARRSVPRKSTVDKYSIIKYPLTTESSMKLIEDSNTLVFIVDIKANKRQIK 96          
BLAST of EWM26043.1 vs. NCBI_GenBank
Match: gi|972237656|emb|CEL04327.1| (Putative 60S ribosomal protein L23 (AFU_orthologue; AFUA_5G05630) [Aspergillus calidoustus])

HSP 1 Score: 113.62 bits (283), Expect = 3.423e-29
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 0
Query:    5 ADKAKAVGKTLKKGVSTRKTR-VHTKVHFYRPKTLKLDRKPKYARKAVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKVRL 99
            +DKA A  K + KG    KTR + T   F+RPKTL+L R PKY RK++PHL + D +++I YPL TESAMKKIE+NNTLVFIVD+ ANKRQIK  L
Sbjct:   14 SDKAGAAAKAVLKGAGAHKTRKIRTSTTFHRPKTLQLSRSPKYPRKSIPHLPRFDAHKVILYPLNTESAMKKIEENNTLVFIVDVKANKRQIKAAL 109          
The following BLAST results are available for this feature:
BLAST of EWM26043.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107980|gb|EWM26043.1|2.562e-112100.0060s ribosomal protein l23, partial [Nannochloropsi... [more]
gi|1072223157|gb|OEU07914.1|9.189e-3566.30Ribosomal_L23-domain-containing protein [Fragilari... [more]
gi|695381843|ref|XP_009517215.1|1.561e-3266.32hypothetical protein PHYSODRAFT_353704 [Phytophtho... [more]
gi|1214709988|gb|OWZ21119.1|6.799e-3265.2660S ribosomal protein L23a [Phytophthora megakarya... [more]
gi|470423489|ref|XP_004337603.1|9.307e-3262.24ribosomal protein L23, putative [Acanthamoeba cast... [more]
gi|953497784|emb|CEG40544.1|1.393e-3166.3260s ribosomal protein l23a [Plasmopara halstedii][more]
gi|675176739|ref|XP_008897254.1|1.425e-3072.5060S ribosomal protein L23a [Phytophthora parasitic... [more]
gi|301119741|ref|XP_002907598.1|3.510e-3071.2560S ribosomal protein L23a [Phytophthora infestans... [more]
gi|224003741|ref|XP_002291542.1|5.595e-3072.60RL23a, ribosomal protein 23a 60S large ribosomal s... [more]
gi|972237656|emb|CEL04327.1|3.423e-2960.42Putative 60S ribosomal protein L23 (AFU_orthologue... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4641rna4641Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications