EWM26069.1, cds4604 (CDS) Nannochloropsis gaditana

Overview
NameEWM26069.1
Unique Namecds4604
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1059654..1059978 +
Alignment locationCM002463.1:1060291..1060586 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26069.1
Productbisphosphoglycerate-dependent phosphoglycerate mutase
Orig transcript idgnl|cribi|Naga_101136g1.3662.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1059654..1059978 +
CM002463.1supercontigCM002463.1:1060291..1060586 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0008152metabolic process
GO:0006096glycolytic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004619phosphoglycerate mutase activity
GO:0016868intramolecular transferase activity, phosphotransferases
Vocabulary: INTERPRO
TermDefinition
IPR001345PG/BPGM_mutase_AS
IPR005952Phosphogly_mut1
IPR029033His_PPase_superfam
IPR013078His_Pase_superF_clade-1
Homology
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|585108050|gb|EWM26069.1| (bisphosphoglycerate-dependent phosphoglycerate mutase [Nannochloropsis gaditana])

HSP 1 Score: 425.246 bits (1092), Expect = 1.061e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MCQRSRLRKVALYPTIAWSKESTHVERRPGRRWNRDCVAGFLALMAFLGRGDRVVLAFSLPSVHRAHADHQAFHRNVYISHPTPSRTAQPFPPASPPLFVSRKDHASEGNPWHYRLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVRRGEGVRMVIVYGLPAVAFCVKAGNGVGNATP 206
            MCQRSRLRKVALYPTIAWSKESTHVERRPGRRWNRDCVAGFLALMAFLGRGDRVVLAFSLPSVHRAHADHQAFHRNVYISHPTPSRTAQPFPPASPPLFVSRKDHASEGNPWHYRLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVRRGEGVRMVIVYGLPAVAFCVKAGNGVGNATP
Sbjct:    1 MCQRSRLRKVALYPTIAWSKESTHVERRPGRRWNRDCVAGFLALMAFLGRGDRVVLAFSLPSVHRAHADHQAFHRNVYISHPTPSRTAQPFPPASPPLFVSRKDHASEGNPWHYRLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVRRGEGVRMVIVYGLPAVAFCVKAGNGVGNATP 206          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|647564817|ref|WP_025843290.1| (phosphoglyceromutase [Porphyromonas gingivicanis] >gi|700248027|gb|KGN97067.1| phosphoglyceromutase [Porphyromonas gingivicanis])

HSP 1 Score: 86.2705 bits (212), Expect = 4.899e-17
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0
Query:  115 RLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVR 175
            RL+LLRHGESVWN++ R+ GWTDV L+E+G  EA  AG++LR +G R  + +TSYLKR V+
Sbjct:    3 RLVLLRHGESVWNKENRFTGWTDVDLSEKGVEEAHKAGKLLRSEGFRFAKAYTSYLKRAVK 63          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|754520247|ref|WP_041930910.1| (phosphoglyceromutase [Pantoea ananatis])

HSP 1 Score: 85.5001 bits (210), Expect = 6.545e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  116 LILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCV 174
            LILLRHGES WNR+ R+ GWTDVPLT+RG +EA  AG +LR+ GL P +VFTS + RCV
Sbjct:    6 LILLRHGESQWNRENRFTGWTDVPLTDRGRQEADRAGDVLREAGLLPDRVFTSVMTRCV 64          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|502964838|ref|WP_013199814.1| (MULTISPECIES: phosphoglyceromutase [Erwiniaceae] >gi|410688949|ref|YP_006962482.1| Phosphoglycerate mutase (plasmid) [Erwinia amylovora] >gi|299060191|emb|CAX53382.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (plasmid) [Erwinia billingiae Eb661] >gi|385268458|gb|AFI56320.1| Phosphoglycerate mutase (plasmid) [Erwinia amylovora] >gi|768328977|gb|KJH60917.1| phosphoglyceromutase [Pantoea ananatis])

HSP 1 Score: 85.1149 bits (209), Expect = 8.717e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:  116 LILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCV 174
            LILLRHGES WNR+ R+ GWTDVPLT+RG +EA  AG +LR  GL P +VFTS + RCV
Sbjct:    6 LILLRHGESQWNRENRFTGWTDVPLTDRGRQEADRAGDVLRDAGLLPDRVFTSVMTRCV 64          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|327395183|dbj|BAK12605.1| (3-bisphosphoglycerate-dependent phosphoglycerate mutase [Pantoea ananatis AJ13355])

HSP 1 Score: 85.8853 bits (211), Expect = 9.021e-17
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   75 RNVYISHPTPSRTAQPFPPASPPLFVSRKDHASEGNPWHYRLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCV 174
            RN     P     AQP  P++                    LILLRHGES WNR+ R+ GWTDVPLT+RG +EA  AG +LR+ GL P +VFTS + RCV
Sbjct:   11 RNRSAGRPAAGTGAQPLAPST--------------------LILLRHGESQWNRENRFTGWTDVPLTDRGRQEADRAGDVLREAGLLPDRVFTSVMTRCV 90          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|308056993|gb|ADO09165.1| (Phosphoglycerate mutase 1 [Pantoea vagans C9-1])

HSP 1 Score: 83.9593 bits (206), Expect = 9.235e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:  116 LILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCV 174
            LILLRHGES WNR+ R+ GWTDVPLT+RG +EA  AG +LR  GL P +VFTS + RCV
Sbjct:   28 LILLRHGESQWNRENRFTGWTDVPLTDRGRQEADRAGDVLRDAGLLPDRVFTSVMTRCV 86          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|1053717190|ref|WP_066041184.1| (phosphoglyceromutase [Bacteroidales bacterium KA00251] >gi|987321796|gb|KXB35810.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Bacteroidales bacterium KA00251])

HSP 1 Score: 85.5001 bits (210), Expect = 1.013e-16
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 0
Query:  115 RLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVR 175
            +LIL+RHGES WN++ R+ GWTDV LT++G  EA  AGR+L+Q+G R    FTSYLKR ++
Sbjct:    3 KLILIRHGESAWNKENRFTGWTDVDLTDKGVAEAHEAGRLLKQEGFRFAVAFTSYLKRAIK 63          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|366040067|gb|AEX08444.1| (Phosphoglycerate mutase 1 (plasmid) [Erwinia amylovora ACW56400])

HSP 1 Score: 85.1149 bits (209), Expect = 1.420e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:  116 LILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCV 174
            LILLRHGES WNR+ R+ GWTDVPLT+RG +EA  AG +LR  GL P +VFTS + RCV
Sbjct:   32 LILLRHGESQWNRENRFTGWTDVPLTDRGRQEADRAGDVLRDAGLLPDRVFTSVMTRCV 90          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|298705594|emb|CBJ28845.1| (phosphoglycerate mutase [Ectocarpus siliculosus])

HSP 1 Score: 85.5001 bits (210), Expect = 1.591e-16
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0
Query:  114 YRLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVR 175
            +R++ LRHGES WNRD R+IGWTDVPLTE+GE EA  AGR LR++G     VF S LKR ++
Sbjct:   22 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLK 83          
BLAST of EWM26069.1 vs. NCBI_GenBank
Match: gi|1154823167|ref|WP_078736568.1| (phosphoglyceromutase [Porphyromonas circumdentaria] >gi|1152073988|emb|SJZ61184.1| phosphoglycerate mutase [Porphyromonas circumdentaria])

HSP 1 Score: 83.5741 bits (205), Expect = 4.326e-16
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 0
Query:  115 RLILLRHGESVWNRDGRYIGWTDVPLTERGEREAQAAGRMLRQQGLRPCQVFTSYLKRCVR 175
            RL+LLRHGESVWN++ R+ GWTDV L+E+G  EA  AG++LR +G    + +TSYLKR V+
Sbjct:    3 RLVLLRHGESVWNKENRFTGWTDVDLSEKGVEEAHKAGKLLRAEGFHFAKAYTSYLKRAVK 63          
The following BLAST results are available for this feature:
BLAST of EWM26069.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108050|gb|EWM26069.1|1.061e-150100.00bisphosphoglycerate-dependent phosphoglycerate mut... [more]
gi|647564817|ref|WP_025843290.1|4.899e-1759.02phosphoglyceromutase [Porphyromonas gingivicanis] ... [more]
gi|754520247|ref|WP_041930910.1|6.545e-1766.10phosphoglyceromutase [Pantoea ananatis][more]
gi|502964838|ref|WP_013199814.1|8.717e-1766.10MULTISPECIES: phosphoglyceromutase [Erwiniaceae] >... [more]
gi|327395183|dbj|BAK12605.1|9.021e-1746.003-bisphosphoglycerate-dependent phosphoglycerate m... [more]
gi|308056993|gb|ADO09165.1|9.235e-1766.10Phosphoglycerate mutase 1 [Pantoea vagans C9-1][more]
gi|1053717190|ref|WP_066041184.1|1.013e-1657.38phosphoglyceromutase [Bacteroidales bacterium KA00... [more]
gi|366040067|gb|AEX08444.1|1.420e-1666.10Phosphoglycerate mutase 1 (plasmid) [Erwinia amylo... [more]
gi|298705594|emb|CBJ28845.1|1.591e-1661.29phosphoglycerate mutase [Ectocarpus siliculosus][more]
gi|1154823167|ref|WP_078736568.1|4.326e-1657.38phosphoglyceromutase [Porphyromonas circumdentaria... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4616rna4616Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications