EWM26073.1, cds4601 (CDS) Nannochloropsis gaditana

Overview
NameEWM26073.1
Unique Namecds4601
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1048012..1048080 +
Alignment locationCM002463.1:1048346..1048410 +
Alignment locationCM002463.1:1048552..1048631 +
Alignment locationCM002463.1:1048874..1048940 +
Alignment locationCM002463.1:1049235..1049324 +
Alignment locationCM002463.1:1049541..1049632 +
Alignment locationCM002463.1:1049850..1049914 +
Alignment locationCM002463.1:1050086..1050141 +
Alignment locationCM002463.1:1050375..1050405 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26073.1
Productmeiotic nuclear division protein 1
Orig transcript idgnl|cribi|Naga_100278g2.6824.mrna
GeneMND1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1048012..1048080 +
CM002463.1supercontigCM002463.1:1048346..1048410 +
CM002463.1supercontigCM002463.1:1048552..1048631 +
CM002463.1supercontigCM002463.1:1048874..1048940 +
CM002463.1supercontigCM002463.1:1049235..1049324 +
CM002463.1supercontigCM002463.1:1049541..1049632 +
CM002463.1supercontigCM002463.1:1049850..1049914 +
CM002463.1supercontigCM002463.1:1050086..1050141 +
CM002463.1supercontigCM002463.1:1050375..1050405 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0007049cell cycle
GO:0006259DNA metabolic process
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR005647Mnd1
Homology
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|585108061|gb|EWM26073.1| (meiotic nuclear division protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 418.313 bits (1074), Expect = 4.686e-148
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE
Sbjct:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|553182465|ref|XP_005853732.1| (meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526] >gi|553186175|ref|XP_005854373.1| meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526] >gi|422294688|gb|EKU21988.1| meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526] >gi|422295329|gb|EKU22628.1| meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 399.053 bits (1024), Expect = 1.399e-140
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLG 195
            MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLG
Sbjct:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLG 195          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|329132755|gb|AEB78308.1| (meiotic nuclear division protein 1 [Undaria pinnatifida])

HSP 1 Score: 197.208 bits (500), Expect = 1.250e-60
Identity = 97/201 (48.26%), Postives = 141/201 (70.15%), Query Frame = 0
Query:    4 RKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLE-EVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYV 203
            +KG+SLEEKR  IL IYH T +++SLKE+E  ASKQGVVSQ++KDVNQ LVDDGLV+M+K+G SN F++FP KA+  ++    +L+ ++A+ +   +  + K A+L   R D+E+R+  +   +     + KQLE E +  K+NDP ++E++   A +CK GVNRWTDN +SIKS++VK RGM   DVDK+L +   FD+V
Sbjct:    3 KKGLSLEEKRAKILNIYHGTKSIFSLKEIEKAASKQGVVSQTIKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIAKAEDTAAVNKRKIASLVEERADTEERQLKLRRLQDN-KQRVKQLESEYETLKENDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|299117090|emb|CBN73861.1| (MND1 family [Ectocarpus siliculosus])

HSP 1 Score: 192.971 bits (489), Expect = 4.985e-59
Identity = 94/201 (46.77%), Postives = 137/201 (68.16%), Query Frame = 0
Query:    4 RKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLE-EVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYV 203
            ++G+S+EEKR  +L IYHST A+YSLKE+E  ASKQGV   +VKDVNQ LVDDGLV+M+K+GASN F++FP K   +K+    NLE  +A+ + + +  + K + L  GR D+  RR+ +   +    L+ ++LE E +  K+NDP ++E++     +CK GVNRWTDN + IKS++VK +GM  KDVD++L +   FD V
Sbjct:    3 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTAANKRKFSELEEGRADTASRREKLGRLQEN-GLRLQELEKEYESLKENDPAELEKVARLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDRYLQIKGDFDLV 202          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|570949895|gb|ETP15152.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 179.874 bits (455), Expect = 6.569e-54
Identity = 93/208 (44.71%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALA----LKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MP RKG+SL+EKR+ IL+IYH +  V++LKE+E L SK GVV Q+VKDVNQ LVDD LV+ +K+G+ N F++FP K   S++     LE      +  ++ +++      + R DS++R Q +   E   A    L+TK    VQ   +NDP  +E LE +  + K+G +RWTDN++++KS++VKKRG+  K+VDK+LG+ D FDYVE
Sbjct:    1 MP-RKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQHRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNGLRTK----VQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYVE 203          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|675168485|ref|XP_008893127.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567988447|gb|ETL38725.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568106694|gb|ETN21324.1| hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 179.874 bits (455), Expect = 6.641e-54
Identity = 93/208 (44.71%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALA----LKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MP RKG+SL+EKR+ IL+IYH +  V++LKE+E L SK GVV Q+VKDVNQ LVDD LV+ +K+G+ N F++FP K   S++     LE      +  ++ +++      + R DS++R Q +   E   A    L+TK    VQ   +NDP  +E LE +  + K+G +RWTDN++++KS++VKKRG+  K+VDK+LG+ D FDYVE
Sbjct:    1 MP-RKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQRRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNGLRTK----VQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYVE 203          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|567959738|gb|ETK85306.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 179.104 bits (453), Expect = 1.305e-53
Identity = 96/215 (44.65%), Postives = 140/215 (65.12%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAG-------RQDSEKRRQNMEDYE----TALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MP RKG+SL+EKR+ IL+IYH +  V++LKE+E L SK GVV Q+VKDVNQ LVDD LV+ +K+G+ N F++FP K   S++        +++ L+ H  T +EK A +          R DS++R Q +   E       AL+TK    VQ   +NDP  +E LE +  + K+G +RWTDN++++K+++VKKRG+  K+VDK+LG+ D FDYVE
Sbjct:    1 MP-RKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRK-------RKLSELEQHRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNALRTK----VQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKAWVVKKRGVEGKEVDKWLGIKDDFDYVE 203          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|566022425|gb|ETI45336.1| (hypothetical protein, variant [Phytophthora parasitica P1569] >gi|570983363|gb|ETP43207.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 179.104 bits (453), Expect = 1.713e-53
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALA----LKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MP RKG+SL+EKR+ IL+IYH +  V++LKE+E L SK GVV Q+VKDVNQ LVDD LV+ +K+G+ N F++FP K   S++     LE      +  ++ +++      + R DS++R Q +   E   A    L+TK    VQ   +NDP  +E LE +  + K+G +RWTDN++++K+++VKKRG+  K+VDK+LG+ D FDYVE
Sbjct:    1 MP-RKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQHRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNGLRTK----VQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKAWVVKKRGVEGKEVDKWLGIKDDFDYVE 203          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|568048062|gb|ETM45129.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570326030|gb|ETO73978.1| hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 178.718 bits (452), Expect = 1.973e-53
Identity = 92/208 (44.23%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALA----LKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MP RKG+SL+EKR+ IL+IYH +  V++LKE+E L SK GVV Q+VKDVNQ LVDD LV+ +K+G+ N F++FP K   S++     LE      +  ++ +++      + R DS++R Q +   E   A    L+TK    VQ   +NDP  +E LE +  + K+G +RWTDN++++K+++VKKRG+  K+VDK+LG+ D FDYVE
Sbjct:    1 MP-RKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQRRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNGLRTK----VQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKAWVVKKRGVEGKEVDKWLGIKDDFDYVE 203          
BLAST of EWM26073.1 vs. NCBI_GenBank
Match: gi|953499240|emb|CEG39552.1| (Protein involved in meiotic recombination/predicted coiled-coil protein [Plasmopara halstedii])

HSP 1 Score: 178.333 bits (451), Expect = 3.117e-53
Identity = 93/205 (45.37%), Postives = 137/205 (66.83%), Query Frame = 0
Query:    1 MPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEE-VQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
            MP RKG+SL+EKR+ IL+IYH +  V++LKE+E L SK GVV Q+VKDVNQ LVDD LV+ +K+G+ N F++FP K   S++     LE      +  +  ++EK     A R DS++R Q ++  E  L +K + L   +Q   +NDP  +E LE +  + K+G +RWTDN+F++KS++VKKRG+  K+V+K+L + D FDYVE
Sbjct:    1 MP-RKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQCRQARQEKLDRVKEKIEEQQALRSDSDERIQKLKRLEE-LKVKVESLRNTMQHLAENDPAILEDLECKVGIAKEGADRWTDNVFTLKSWVVKKRGVEGKEVNKWLEIQDDFDYVE 203          
The following BLAST results are available for this feature:
BLAST of EWM26073.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108061|gb|EWM26073.1|4.686e-148100.00meiotic nuclear division protein 1 [Nannochloropsi... [more]
gi|553182465|ref|XP_005853732.1|1.399e-140100.00meiotic nuclear divisions 1-like protein [Nannochl... [more]
gi|329132755|gb|AEB78308.1|1.250e-6048.26meiotic nuclear division protein 1 [Undaria pinnat... [more]
gi|299117090|emb|CBN73861.1|4.985e-5946.77MND1 family [Ectocarpus siliculosus][more]
gi|570949895|gb|ETP15152.1|6.569e-5444.71hypothetical protein, variant [Phytophthora parasi... [more]
gi|675168485|ref|XP_008893127.1|6.641e-5444.71hypothetical protein, variant [Phytophthora parasi... [more]
gi|567959738|gb|ETK85306.1|1.305e-5344.65hypothetical protein, variant [Phytophthora parasi... [more]
gi|566022425|gb|ETI45336.1|1.713e-5344.23hypothetical protein, variant [Phytophthora parasi... [more]
gi|568048062|gb|ETM45129.1|1.973e-5344.23hypothetical protein, variant [Phytophthora parasi... [more]
gi|953499240|emb|CEG39552.1|3.117e-5345.37Protein involved in meiotic recombination/predicte... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4613rna4613Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications