EWM26072.1, cds4599 (CDS) Nannochloropsis gaditana

Overview
NameEWM26072.1
Unique Namecds4599
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1045191..1045369 -
Alignment locationCM002463.1:1044928..1045078 -
Alignment locationCM002463.1:1044780..1044837 -
Alignment locationCM002463.1:1044606..1044673 -
Alignment locationCM002463.1:1044315..1044413 -
Alignment locationCM002463.1:1044012..1044167 -
Alignment locationCM002463.1:1043729..1043807 -
Alignment locationCM002463.1:1043466..1043569 -
Alignment locationCM002463.1:1043206..1043310 -
Alignment locationCM002463.1:1042887..1043006 -
Alignment locationCM002463.1:1042495..1042686 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26072.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100278g4.6823.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1045191..1045369 -
CM002463.1supercontigCM002463.1:1044928..1045078 -
CM002463.1supercontigCM002463.1:1044780..1044837 -
CM002463.1supercontigCM002463.1:1044606..1044673 -
CM002463.1supercontigCM002463.1:1044315..1044413 -
CM002463.1supercontigCM002463.1:1044012..1044167 -
CM002463.1supercontigCM002463.1:1043729..1043807 -
CM002463.1supercontigCM002463.1:1043466..1043569 -
CM002463.1supercontigCM002463.1:1043206..1043310 -
CM002463.1supercontigCM002463.1:1042887..1043006 -
CM002463.1supercontigCM002463.1:1042495..1042686 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|585108060|gb|EWM26072.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0
Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 0
Query:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVSKRKEGRSERNKEKRKGVDDRVRVEQG 436
            MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVSKRKEGRSERNKEKRKGVDDRVRVEQG
Sbjct:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVSKRKEGRSERNKEKRKGVDDRVRVEQG 436          
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|585108059|gb|EWM26071.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK 408
            MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK
Sbjct:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK 408          
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|553182461|ref|XP_005853731.1| (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >gi|553186167|ref|XP_005854371.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422294686|gb|EKU21986.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422295328|gb|EKU22627.1| hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 487.263 bits (1253), Expect = 1.790e-168
Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 0
Query:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSI 240
            MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFAN+MAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLM  +
Sbjct:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMGDL 240          

HSP 2 Score: 166.392 bits (420), Expect = 1.567e-43
Identity = 84/107 (78.50%), Postives = 86/107 (80.37%), Query Frame = 0
Query:  334 GDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVS--------------KRKEGRSERNKEKRKG 426
            GDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVS              KR   R   + EK+KG
Sbjct:  238 GDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVSLQVNVSVNAPIEGYKRNSSRVAVSHEKKKG 344          
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|585109123|gb|EWM26963.1| (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 178.718 bits (452), Expect = 1.875e-49
Identity = 100/266 (37.59%), Postives = 155/266 (58.27%), Query Frame = 0
Query:   56 QIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPA-AAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWR----FQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDI 315
            ++  +++ AL+IL +V IP  + +   A VYAWI   QY YT +DWQRCLV PN+     G    D+T +  +AA++A +  VF+I+ F     G+ D D+LPY+LF +   +LG+ VYRE+ PIQP+P+ +SATL+TL K+I P MY+  PA   +  P+ C+ A+  N+ FL+ Q ++++L   +F      ++A Y I    R     +L      L L+ +   GY+    AKE VA  T+ VL ES+L  +F F K ++ +
Sbjct:   15 EVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKG----GFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLF------SIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGM 270          
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|585102066|gb|EWM21737.1| (hypothetical protein Naga_100270g4 [Nannochloropsis gaditana])

HSP 1 Score: 184.496 bits (467), Expect = 1.604e-48
Identity = 117/364 (32.14%), Postives = 194/364 (53.30%), Query Frame = 0
Query:   12 ARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQI----QDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKD--DWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYR---IGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYN 365
               SP P   G+  +S++ R   SG ++S    ++D         +    + + L  LR LF V +PL+I+   +AC+Y WIF N  +Y +D   WQRC+VY          + A   N+ ++A+++ G +F+F+ + FK  Y+G++D D+LPYSL      +LG +VYR   P+ P   +L+ TL++L  +++P MY+  P AA     +C  A  +N  FL F   V+VL  + F  +     A YR   + +  R+ L  +   L L+ +A   Y+    AKE  A  TL +L++     +F F +  LD V L +++T+ ++  G CK + E FK  +F +Y+HV+LSYP +++   AY+
Sbjct:   72 GNESPMPR-CGEGVASTAFR--ASGPRTSGVHLQKDNEEEEEEDPLIVATRTQCLGLLRKLFYVVMPLSIVASIYACLYGWIFVNTPTYLQDPTSWQRCIVYNTN------NANATPQNFAVSASAFGGMMFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAA----GACQHARRVNVSFLAF---VLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAYH 419          
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|553190289|ref|XP_005855162.1| (hypothetical protein NGA_0147800, partial [Nannochloropsis gaditana CCMP526] >gi|422293903|gb|EKU21203.1| hypothetical protein NGA_0147800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.413 bits (324), Expect = 6.718e-30
Identity = 79/234 (33.76%), Postives = 130/234 (55.56%), Query Frame = 0
Query:  136 VFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYR---IGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYN 365
            +F+F+ + FK  Y+G++D D+LPYSL      +LG +VYR   P+ P   +L+ TL++L  +++P MY+  P AA     +C  A  +N  FL F   V+VL  + F  +     A YR   + +  R+ L  +   L L+ +A   Y+    AKE  A  TL +L++     +F F +  LD V L +++T+ ++  G CK + E FK  +F +Y+HV+LSYP +++   AY+
Sbjct:    1 MFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAA----GACQHARRVNVSFLAF---VLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAYH 227          
BLAST of EWM26072.1 vs. NCBI_GenBank
Match: gi|585105799|gb|EWM24397.1| (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana])

HSP 1 Score: 107.842 bits (268), Expect = 5.911e-24
Identity = 56/156 (35.90%), Postives = 89/156 (57.05%), Query Frame = 0
Query:   48 QRLARRYFQIQDRSLTALRILFVVGI-PLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202
            +RL RR  +    SL  LRI+F + + PL I +  F C+YA I+A + SY  +DW +CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G++D D L +S F  ++ +LGI +YRE+ P    P  +S TL TL KYI P +
Sbjct:   24 RRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174          
The following BLAST results are available for this feature:
BLAST of EWM26072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585108060|gb|EWM26072.1|0.000e+0100.00hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|585108059|gb|EWM26071.1|0.000e+0100.00hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|553182461|ref|XP_005853731.1|1.790e-16898.33hypothetical protein NGA_0163502 [Nannochloropsis ... [more]
gi|585109123|gb|EWM26963.1|1.875e-4937.59hypothetical protein Naga_101509g1, partial [Nanno... [more]
gi|585102066|gb|EWM21737.1|1.604e-4832.14hypothetical protein Naga_100270g4 [Nannochloropsi... [more]
gi|553190289|ref|XP_005855162.1|6.718e-3033.76hypothetical protein NGA_0147800, partial [Nannoch... [more]
gi|585105799|gb|EWM24397.1|5.911e-2435.90hypothetical protein Naga_100283g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4611rna4611Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications