EWM26071.1, cds4598 (CDS) Nannochloropsis gaditana

Overview
NameEWM26071.1
Unique Namecds4598
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1045191..1045369 -
Alignment locationCM002463.1:1044928..1045078 -
Alignment locationCM002463.1:1044780..1044837 -
Alignment locationCM002463.1:1044606..1044673 -
Alignment locationCM002463.1:1044315..1044413 -
Alignment locationCM002463.1:1044012..1044167 -
Alignment locationCM002463.1:1043729..1043807 -
Alignment locationCM002463.1:1043466..1043569 -
Alignment locationCM002463.1:1043206..1043310 -
Alignment locationCM002463.1:1042887..1043006 -
Alignment locationCM002463.1:1042582..1042686 -
Alignment locationCM002463.1:1042201..1042369 -
Alignment locationCM002463.1:1041794..1042023 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26071.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100278g4.6822.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1045191..1045369 -
CM002463.1supercontigCM002463.1:1044928..1045078 -
CM002463.1supercontigCM002463.1:1044780..1044837 -
CM002463.1supercontigCM002463.1:1044606..1044673 -
CM002463.1supercontigCM002463.1:1044315..1044413 -
CM002463.1supercontigCM002463.1:1044012..1044167 -
CM002463.1supercontigCM002463.1:1043729..1043807 -
CM002463.1supercontigCM002463.1:1043466..1043569 -
CM002463.1supercontigCM002463.1:1043206..1043310 -
CM002463.1supercontigCM002463.1:1042887..1043006 -
CM002463.1supercontigCM002463.1:1042582..1042686 -
CM002463.1supercontigCM002463.1:1042201..1042369 -
CM002463.1supercontigCM002463.1:1041794..1042023 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|585108059|gb|EWM26071.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 1114.37 bits (2881), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0
Query:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKEAETLCRMCHLSLIGQLIQFGAQHLVVIACLYILYANRDLPAQRLRLGTYIPDYLGGLQVNVSVNAPIEGYKRNSSRVAVSHEKKKGRTEVPYGVHYIRLPGEPEEEDTILGDRGAEEGKIKDENDNVVIGV 540
            MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKEAETLCRMCHLSLIGQLIQFGAQHLVVIACLYILYANRDLPAQRLRLGTYIPDYLGGLQVNVSVNAPIEGYKRNSSRVAVSHEKKKGRTEVPYGVHYIRLPGEPEEEDTILGDRGAEEGKIKDENDNVVIGV
Sbjct:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKEAETLCRMCHLSLIGQLIQFGAQHLVVIACLYILYANRDLPAQRLRLGTYIPDYLGGLQVNVSVNAPIEGYKRNSSRVAVSHEKKKGRTEVPYGVHYIRLPGEPEEEDTILGDRGAEEGKIKDENDNVVIGV 540          
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|585108060|gb|EWM26072.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK 408
            MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK
Sbjct:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK 408          
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|553182461|ref|XP_005853731.1| (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >gi|553186167|ref|XP_005854371.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422294686|gb|EKU21986.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422295328|gb|EKU22627.1| hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 487.263 bits (1253), Expect = 9.088e-167
Identity = 236/237 (99.58%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLM 237
            MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFAN+MAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLM
Sbjct:    1 MPLFSYGRRSDARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPASCSLAYALNKWFLIFQILVVVLM 237          

HSP 2 Score: 160.999 bits (406), Expect = 1.223e-40
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query:  466 LQVNVSVNAPIEGYKRNSSRVAVSHEKKKGRTEVPYGVHYIRLPGEPEEEDTILGDRGAEEGKIKDENDNVVIGV 540
            LQVNVSVNAPIEGYKRNSSRVAVSHEKKKGRTEVPYGVHYIRLPGEPEEEDTILGDRGAEEGKIKDENDNVVIGV
Sbjct:  315 LQVNVSVNAPIEGYKRNSSRVAVSHEKKKGRTEVPYGVHYIRLPGEPEEEDTILGDRGAEEGKIKDENDNVVIGV 389          

HSP 3 Score: 159.458 bits (402), Expect = 4.586e-40
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query:  334 GDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK 408
            GDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK
Sbjct:  238 GDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPK 312          
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|585102066|gb|EWM21737.1| (hypothetical protein Naga_100270g4 [Nannochloropsis gaditana])

HSP 1 Score: 203.371 bits (516), Expect = 2.022e-54
Identity = 138/449 (30.73%), Postives = 228/449 (50.78%), Query Frame = 0
Query:   12 ARSSPPPSGAGDANSSSSKRRIESGKKSSSKQTKEDQRLARRY----FQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKD--DWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYR---IGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPA-----YVTAKSAIFERFPKEAETLCRMCHLSLIGQLIQFGAQHLVVIACLYILYAN 445
               SP P   G+  +S++ R   SG ++S    ++D              + + L  LR LF V +PL+I+   +AC+Y WIF N  +Y +D   WQRC+VY          + A   N+ ++A+++ G +F+F+ + FK  Y+G++D D+LPYSL      +LG +VYR   P+ P   +L+ TL++L  +++P MY+  P AA     +C  A  +N  FL F   V+VL  + F  +     A YR   + +  R+ L  +   L L+ +A   Y+    AKE  A  TL +L++     +F F +  LD V L +++T+ ++  G CK + E FK  +F +Y+HV+LSYP +++   AY+   Y +  D            D  +   A     ++ AK+    ++P+     CR   ++L+GQ  QF   HL + ACL ++ AN
Sbjct:   72 GNESPMPR-CGEGVASTAFR--ASGPRTSGVHLQKDNEEEEEEDPLIVATRTQCLGLLRKLFYVVMPLSIVASIYACLYGWIFVNTPTYLQDPTSWQRCIVYNTN------NANATPQNFAVSASAFGGMMFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAA----GACQHARRVNVSFLAF---VLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAYH--LYGFWTDAGCTHFLET---DTTHAGGANRQLLFLVAKN----KYPETERGFCRDTRVALVGQCAQFIIMHLAIGACLLVVVAN 495          
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|585109123|gb|EWM26963.1| (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 178.333 bits (451), Expect = 2.149e-48
Identity = 100/266 (37.59%), Postives = 155/266 (58.27%), Query Frame = 0
Query:   56 QIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPA-AAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWR----FQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDI 315
            ++  +++ AL+IL +V IP  + +   A VYAWI   QY YT +DWQRCLV PN+     G    D+T +  +AA++A +  VF+I+ F     G+ D D+LPY+LF +   +LG+ VYRE+ PIQP+P+ +SATL+TL K+I P MY+  PA   +  P+ C+ A+  N+ FL+ Q ++++L   +F      ++A Y I    R     +L      L L+ +   GY+    AKE VA  T+ VL ES+L  +F F K ++ +
Sbjct:   15 EVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKG----GFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLF------SIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADMGM 270          
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|553190289|ref|XP_005855162.1| (hypothetical protein NGA_0147800, partial [Nannochloropsis gaditana CCMP526] >gi|422293903|gb|EKU21203.1| hypothetical protein NGA_0147800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.058 bits (375), Expect = 2.116e-36
Identity = 100/319 (31.35%), Postives = 165/319 (51.72%), Query Frame = 0
Query:  136 VFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYS-FPAAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYR---IGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPA-----YVTAKSAIFERFPKEAETLCRMCHLSLIGQLIQFGAQHLVVIACLYILYAN 445
            +F+F+ + FK  Y+G++D D+LPYSL      +LG +VYR   P+ P   +L+ TL++L  +++P MY+  P AA     +C  A  +N  FL F   V+VL  + F  +     A YR   + +  R+ L  +   L L+ +A   Y+    AKE  A  TL +L++     +F F +  LD V L +++T+ ++  G CK + E FK  +F +Y+HV+LSYP +++   AY+   Y +  D            D  +   A     ++ AK+    ++P+     CR   ++L+GQ  QF   HL + ACL ++ AN
Sbjct:    1 MFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAA----GACQHARRVNVSFLAF---VLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAYH--LYGFWTDAGCTHFLET---DTTHAGGANRQLLFLVAKN----KYPETERGFCRDTRVALVGQCAQFIIMHLAIGACLLVVVAN 303          
BLAST of EWM26071.1 vs. NCBI_GenBank
Match: gi|585105799|gb|EWM24397.1| (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana])

HSP 1 Score: 107.071 bits (266), Expect = 2.216e-23
Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   40 SSKQTKEDQRLARRYFQIQDRSLTALRILFVVGI-PLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202
            + +  +  +RL RR  +    SL  LRI+F + + PL I +  F C+YA I+A + SY  +DW +CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G++D D L +S F  ++ +LGI +YRE+ P    P  +S TL TL KYI P +
Sbjct:   16 TCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174          
The following BLAST results are available for this feature:
BLAST of EWM26071.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585108059|gb|EWM26071.1|0.000e+0100.00hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|585108060|gb|EWM26072.1|0.000e+0100.00hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|553182461|ref|XP_005853731.1|9.088e-16799.58hypothetical protein NGA_0163502 [Nannochloropsis ... [more]
gi|585102066|gb|EWM21737.1|2.022e-5430.73hypothetical protein Naga_100270g4 [Nannochloropsi... [more]
gi|585109123|gb|EWM26963.1|2.149e-4837.59hypothetical protein Naga_101509g1, partial [Nanno... [more]
gi|553190289|ref|XP_005855162.1|2.116e-3631.35hypothetical protein NGA_0147800, partial [Nannoch... [more]
gi|585105799|gb|EWM24397.1|2.216e-2334.15hypothetical protein Naga_100283g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4610rna4610Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications