EWM26130.1, cds4582 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26130.1
Unique Name	cds4582
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002463.1:992454..992607 +
Alignment location	CM002463.1:992847..993136 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26130.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100014g73.9307.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:992454..992607 +
CM002463.1	supercontig	CM002463.1:992847..993136 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26130.1 vs. NCBI_GenBank
Match: gi|585108124|gb|EWM26130.1| (hypothetical protein Naga_100014g73 [Nannochloropsis gaditana])

HSP 1 Score: 301.982 bits (772), Expect = 7.122e-104
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0

Query:    1 MRDPIYSMKRSPRKVYFSNYVYRTTDFLISILSKGIFRIHCFHEPELSTQFGLGMYFDSALVQYLPSCDNRDACRYPALSRRATTGSGRSFQTFVSKRCHFLHSGSGHQCVKFLGFRKNITLGLSGSLTFQIIGHLYIGLQCLPLPI 147
            MRDPIYSMKRSPRKVYFSNYVYRTTDFLISILSKGIFRIHCFHEPELSTQFGLGMYFDSALVQYLPSCDNRDACRYPALSRRATTGSGRSFQTFVSKRCHFLHSGSGHQCVKFLGFRKNITLGLSGSLTFQIIGHLYIGLQCLPLPI
Sbjct:    1 MRDPIYSMKRSPRKVYFSNYVYRTTDFLISILSKGIFRIHCFHEPELSTQFGLGMYFDSALVQYLPSCDNRDACRYPALSRRATTGSGRSFQTFVSKRCHFLHSGSGHQCVKFLGFRKNITLGLSGSLTFQIIGHLYIGLQCLPLPI 147

The following BLAST results are available for this feature:

BLAST of EWM26130.1 vs. NCBI_GenBank

BLAST of EWM26130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108124\|gb\|EWM26130.1\|	7.122e-104	100.00	hypothetical protein Naga_100014g73 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4594	rna4594	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications