EWM26081.1, cds4566 (CDS) Nannochloropsis gaditana

Overview
NameEWM26081.1
Unique Namecds4566
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:955828..955878 +
Alignment locationCM002463.1:955921..955980 +
Alignment locationCM002463.1:956242..957219 +
Alignment locationCM002463.1:957350..957766 +
Alignment locationCM002463.1:957838..958266 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26081.1
ProductReplication factor Mcm10
Orig transcript idgnl|cribi|Naga_100014g56.9258.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:955828..955878 +
CM002463.1supercontigCM002463.1:955921..955980 +
CM002463.1supercontigCM002463.1:956242..957219 +
CM002463.1supercontigCM002463.1:957350..957766 +
CM002463.1supercontigCM002463.1:957838..958266 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015411Rep_factor_Mcm10
Homology
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|585108075|gb|EWM26081.1| (Replication factor Mcm10 [Nannochloropsis gaditana])

HSP 1 Score: 1336.63 bits (3458), Expect = 0.000e+0
Identity = 644/644 (100.00%), Postives = 644/644 (100.00%), Query Frame = 0
Query:    1 MMMNEAHAWAVGRPGWATLVININRNIDERSKRTEPAPLSPCKGLPLTHPCAIDAAPTKMSRLIPFELSTLKKSSDEIENSIAGRPLLQVNDIGGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSATPPSSQALSLPNRVAITAPSRAITSSLPTGTTRPCGLRGHNGKPHISRPTMSVDRPSSLIQKPGKIARYQPKKRELLEKIIKRDQPHRSYTWQPTLSRTARTVNVPESRTNQTFDGHVGGTNLGTGDRSARMDVQQTAKENGVRGIAAILAADELNKDGEVLIPEPSRIFARGPDSVAYAAFRHEQEAKRQARQVGALQYRQLQQKQSEAKAVRAMNFCKRMGGTIRMIQKPENVMLKPKPRMTVPSSAGNRRQLYADGMGLNEAESLMKSKSKHSAEARGELMEHLHGVFEALGEKETRAEYFKNLSSIEVVAVSCQECNRLFEKHPRLCAKRGHILKRLTIKKRFFICGNQGCSEEVSMLGSAAPHEACSRCGEKLWRAKGKGSKAAAGGDTRAKSNGVGVLIPAVSEWNRNADLSSLYTE 644
            MMMNEAHAWAVGRPGWATLVININRNIDERSKRTEPAPLSPCKGLPLTHPCAIDAAPTKMSRLIPFELSTLKKSSDEIENSIAGRPLLQVNDIGGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSATPPSSQALSLPNRVAITAPSRAITSSLPTGTTRPCGLRGHNGKPHISRPTMSVDRPSSLIQKPGKIARYQPKKRELLEKIIKRDQPHRSYTWQPTLSRTARTVNVPESRTNQTFDGHVGGTNLGTGDRSARMDVQQTAKENGVRGIAAILAADELNKDGEVLIPEPSRIFARGPDSVAYAAFRHEQEAKRQARQVGALQYRQLQQKQSEAKAVRAMNFCKRMGGTIRMIQKPENVMLKPKPRMTVPSSAGNRRQLYADGMGLNEAESLMKSKSKHSAEARGELMEHLHGVFEALGEKETRAEYFKNLSSIEVVAVSCQECNRLFEKHPRLCAKRGHILKRLTIKKRFFICGNQGCSEEVSMLGSAAPHEACSRCGEKLWRAKGKGSKAAAGGDTRAKSNGVGVLIPAVSEWNRNADLSSLYTE
Sbjct:    1 MMMNEAHAWAVGRPGWATLVININRNIDERSKRTEPAPLSPCKGLPLTHPCAIDAAPTKMSRLIPFELSTLKKSSDEIENSIAGRPLLQVNDIGGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSATPPSSQALSLPNRVAITAPSRAITSSLPTGTTRPCGLRGHNGKPHISRPTMSVDRPSSLIQKPGKIARYQPKKRELLEKIIKRDQPHRSYTWQPTLSRTARTVNVPESRTNQTFDGHVGGTNLGTGDRSARMDVQQTAKENGVRGIAAILAADELNKDGEVLIPEPSRIFARGPDSVAYAAFRHEQEAKRQARQVGALQYRQLQQKQSEAKAVRAMNFCKRMGGTIRMIQKPENVMLKPKPRMTVPSSAGNRRQLYADGMGLNEAESLMKSKSKHSAEARGELMEHLHGVFEALGEKETRAEYFKNLSSIEVVAVSCQECNRLFEKHPRLCAKRGHILKRLTIKKRFFICGNQGCSEEVSMLGSAAPHEACSRCGEKLWRAKGKGSKAAAGGDTRAKSNGVGVLIPAVSEWNRNADLSSLYTE 644          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|1045381876|dbj|GAU33635.1| (hypothetical protein TSUD_310430, partial [Trifolium subterraneum])

HSP 1 Score: 83.1889 bits (204), Expect = 2.504e-13
Identity = 42/128 (32.81%), Postives = 62/128 (48.44%), Query Frame = 0
Query:   94 GGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSA 221
            G   S ++  VGVL EK  +K S NG +Y +W I  L   ++ + LFGDA     + P G V  L +    + A     SL I+ P+Q++++G S  Y  C      G  C  V N+    +CK H +
Sbjct:  134 GDTFSGSWVTVGVLTEKGAQKTSSNGKSYCIWKIGCLDENTVSLFLFGDAYQRNCHEPAGTVFALFNSSVRKDAKGNGFSLSIYSPNQIMKMGTSVDYGVCKGKRADGMTCTLVINKRQGTYCKYHKS 261          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|308484006|ref|XP_003104204.1| (hypothetical protein CRE_01039 [Caenorhabditis remanei] >gi|308258512|gb|EFP02465.1| hypothetical protein CRE_01039 [Caenorhabditis remanei])

HSP 1 Score: 82.4185 bits (202), Expect = 1.144e-12
Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   47 LTHPCAIDAAPTKMSRLIPFELSTL--KKSSDEIENSIAGRPLLQVNDI--GGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKG---QSIKILLFGDAVLSGENVPLGAVCLLL------DPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATC-GFIDPYGFECDKVYNRHNARFCKVH 219
            LT P + +A    + R   F++S    K SS       AG  L +++D+         +  +GV+ EK  +K+S NG ++++W + +LK    Q +K+L+FGDA+     + LG+V  L+      D   S      + +LK+ K + +++IG SAHY TC G     G  C    N   + FC  H
Sbjct:  112 LTKP-STEAVTVGIVRFDKFQISIRNPKISSSSFGAFTAGMKLEKLSDLKPTANFKEAWCTMGVIVEKGFKKKSANGNDFLIWKLHDLKDCQTQPVKLLMFGDAIKDHWEIKLGSVIALISAQIADDSSASGAKKPVSATLKVSKSNNIVEIGQSAHYGTCKGIRQQDGQRCSNFVNSSLSEFCVFH 297          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|268572549|ref|XP_002641350.1| (Hypothetical protein CBG13203 [Caenorhabditis briggsae])

HSP 1 Score: 81.6481 bits (200), Expect = 1.494e-12
Identity = 57/187 (30.48%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   47 LTHPCAIDAAPTKMSRLIPFELSTL--KKSSDEIENSIAGRPLLQVNDIGGV--LSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKG---QSIKILLFGDAVLSGENVPLGAVCLLL------DPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATC-GFIDPYGFECDKVYNRHNARFCKVH 219
            LT P + +A    + R   F++S    K SS       AG  L +++D+         +  +GV+ EK  +K+S NG ++++W + +LK    Q +K+L+FGDA+     + LG+V  L+      D   S    + + +LK+ K   +I+IG SAHY TC G     G  C    N   + FC  H
Sbjct:    5 LTKP-STEAVTVGIVRFDKFQISIRNPKVSSTSFGAFTAGMKLEKLSDLKPTSNFKEAWCTLGVIVEKGFKKKSANGNDFLIWKLHDLKDCQTQPVKLLMFGDAIKEHWEIKLGSVIGLISAQIADDSTASGTKKNVSATLKVAKSSNIIEIGQSAHYGTCKGTRQQDGQRCSNYVNTSLSEFCVFH 190          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|1044569057|ref|XP_017420964.1| (PREDICTED: protein MCM10 homolog [Vigna angularis] >gi|965661751|dbj|BAT77460.1| hypothetical protein VIGAN_02003900 [Vigna angularis var. angularis])

HSP 1 Score: 80.4925 bits (197), Expect = 1.739e-12
Identity = 58/189 (30.69%), Postives = 85/189 (44.97%), Query Frame = 0
Query:   38 PLSPCKGL-PLTHPCAIDAAPTKMSRL-IPFELST---LKKSSDEIENSIAGRPLLQVNDIGGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSA 221
            P  P K L P   P   D+   K S L I  +L T   LK+   +I        +++ + IG   S N+A VGVL EK  +K S  G ++ +W I  L   +I + LFGDA         G V  L +    + +     SL I+ P Q++++G S  Y  C      G  C  V N+ +  +CK H +
Sbjct:   67 PYDPPKALKPTNKPVTNDSQLEKFSGLRIKNQLLTHAELKEQFSDIR--FVRLSVIKNSLIGDSFSGNWATVGVLTEKGSQKTSSTGKSFSIWKIGCLDECTISLFLFGDAYQRNMQEQAGTVFALFNCAVRKDSAGNGFSLSIYSPRQIVKMGTSVDYGVCKGKRTDGIACTLVINKRHGTYCKYHKS 253          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|1150730874|ref|XP_020276236.1| (protein MCM10 homolog isoform X1 [Asparagus officinalis])

HSP 1 Score: 80.4925 bits (197), Expect = 2.101e-12
Identity = 49/145 (33.79%), Postives = 67/145 (46.21%), Query Frame = 0
Query:   86 PLLQVNDIGGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSATPPSSQALS 230
            P+++    G   S  +A VGVL EK   K S +G NY VW +  L   ++ + LFGDA     N P+GAV  L +    R   S   SL ++    + +IG S  Y  C      G  C  V N+    +CK HS+    SQ  S
Sbjct:  118 PVIRNLIAGDKFSGCWATVGVLIEKVTTKMSSSGKNYCVWKMGCLDETNVSVFLFGDAYTMNSNEPVGAVFALFN-ASLRKDASNGFSLSVYSASNISKIGTSTDYGICKGKRKDGVPCTMVINKRKGAYCKFHSSRSSLSQRYS 261          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|1150730876|ref|XP_020276237.1| (protein MCM10 homolog isoform X2 [Asparagus officinalis] >gi|1141983277|gb|ONK64500.1| uncharacterized protein A4U43_C07F26720 [Asparagus officinalis])

HSP 1 Score: 80.4925 bits (197), Expect = 2.172e-12
Identity = 49/145 (33.79%), Postives = 67/145 (46.21%), Query Frame = 0
Query:   86 PLLQVNDIGGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSATPPSSQALS 230
            P+++    G   S  +A VGVL EK   K S +G NY VW +  L   ++ + LFGDA     N P+GAV  L +    R   S   SL ++    + +IG S  Y  C      G  C  V N+    +CK HS+    SQ  S
Sbjct:  116 PVIRNLIAGDKFSGCWATVGVLIEKVTTKMSSSGKNYCVWKMGCLDETNVSVFLFGDAYTMNSNEPVGAVFALFN-ASLRKDASNGFSLSVYSASNISKIGTSTDYGICKGKRKDGVPCTMVINKRKGAYCKFHSSRSSLSQRYS 259          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|309359901|emb|CAP32028.2| (Protein CBG13203 [Caenorhabditis briggsae])

HSP 1 Score: 80.8777 bits (198), Expect = 2.744e-12
Identity = 57/187 (30.48%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   47 LTHPCAIDAAPTKMSRLIPFELSTL--KKSSDEIENSIAGRPLLQVNDI--GGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKG---QSIKILLFGDAVLSGENVPLGAVCLLL------DPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATC-GFIDPYGFECDKVYNRHNARFCKVH 219
            LT P + +A    + R   F++S    K SS       AG  L +++D+         +  +GV+ EK  +K+S NG ++++W + +LK    Q +K+L+FGDA+     + LG+V  L+      D   S    + + +LK+ K   +I+IG SAHY TC G     G  C    N   + FC  H
Sbjct:   83 LTKP-STEAVTVGIVRFDKFQISIRNPKVSSTSFGAFTAGMKLEKLSDLKPTSNFKEAWCTLGVIVEKGFKKKSANGNDFLIWKLHDLKDCQTQPVKLLMFGDAIKEHWEIKLGSVIGLISAQIADDSTASGTKKNVSATLKVAKSSNIIEIGQSAHYGTCKGTRQQDGQRCSNYVNTSLSEFCVFH 268          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|901816012|gb|KMZ70321.1| (hypothetical protein ZOSMA_1G03020 [Zostera marina])

HSP 1 Score: 79.7221 bits (195), Expect = 2.849e-12
Identity = 57/200 (28.50%), Postives = 83/200 (41.50%), Query Frame = 0
Query:   46 PLTHPCAIDAAPTKMSRLIPFELSTLKKSSDEIENSIAG----RPLLQVNDIGG----------------VLSPN----YALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVHSA 221
            P+   C  D  P           + +K+SSD +    +G     PLL V DI                  +L  N    +A VGVL EK   K S NG N+ VW +  L    + + LFGDA     + P+G +  L++    +       SL I    Q++++G+SA Y  C      G  C  V N+    +CK HS+
Sbjct:   62 PVVDLCTADKNPKS---------NKIKESSDIVMEKFSGLRIRNPLLSVKDINNHFADVRFVRLPAIRNLMLGENTPGCWATVGVLTEKGQTKVSSNGKNFSVWKLGTLDELIVSVFLFGDAHSKNSHEPVGTIFALINSSVRKDTSGKGFSLSIFSNGQILKMGISADYIVCKGKRKDGIACTMVINKCQGIYCKFHSS 252          
BLAST of EWM26081.1 vs. NCBI_GenBank
Match: gi|1108981987|ref|XP_019107498.1| (PREDICTED: protein MCM10 homolog isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 79.337 bits (194), Expect = 3.223e-12
Identity = 47/151 (31.13%), Postives = 67/151 (44.37%), Query Frame = 0
Query:   74 SSDEIENSIAGRPLLQVNDI-----GGVLSPNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDPVGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNRHNARFCKVH 219
            SS E+ N  +    ++++ I     G  LS  +A VGVL EK  +K S  G  Y +W +  L GQ I I LFGDA       P   V    +    + A  +   L + K +Q+++IG S  Y  C      G  C  V N+    +C  H
Sbjct:   59 SSAELSNQFSDIRFVRLSSIKNLIRGETLSGCWATVGVLTEKGTKKTSTTGKGYCIWKVGCLDGQLITIFLFGDAYKQYSKEPASTVFAFFNANVRKEASGSGFQLSVFKANQILKIGTSVDYGVCKGRRKDGLPCSIVVNKRLGIYCSFH 209          
The following BLAST results are available for this feature:
BLAST of EWM26081.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108075|gb|EWM26081.1|0.000e+0100.00Replication factor Mcm10 [Nannochloropsis gaditana... [more]
gi|1045381876|dbj|GAU33635.1|2.504e-1332.81hypothetical protein TSUD_310430, partial [Trifoli... [more]
gi|308484006|ref|XP_003104204.1|1.144e-1229.95hypothetical protein CRE_01039 [Caenorhabditis rem... [more]
gi|268572549|ref|XP_002641350.1|1.494e-1230.48Hypothetical protein CBG13203 [Caenorhabditis brig... [more]
gi|1044569057|ref|XP_017420964.1|1.739e-1230.69PREDICTED: protein MCM10 homolog [Vigna angularis]... [more]
gi|1150730874|ref|XP_020276236.1|2.101e-1233.79protein MCM10 homolog isoform X1 [Asparagus offici... [more]
gi|1150730876|ref|XP_020276237.1|2.172e-1233.79protein MCM10 homolog isoform X2 [Asparagus offici... [more]
gi|309359901|emb|CAP32028.2|2.744e-1230.48Protein CBG13203 [Caenorhabditis briggsae][more]
gi|901816012|gb|KMZ70321.1|2.849e-1228.50hypothetical protein ZOSMA_1G03020 [Zostera marina... [more]
gi|1108981987|ref|XP_019107498.1|3.223e-1231.13PREDICTED: protein MCM10 homolog isoform X2 [Beta ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4578rna4578Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications