EWM30284.1, cds454 (CDS) Nannochloropsis gaditana

Overview
NameEWM30284.1
Unique Namecds454
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1133622..1133967 -
Alignment locationCM002455.1:1131955..1133528 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30284.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g26.1801.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1133622..1133967 -
CM002455.1supercontigCM002455.1:1131955..1133528 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|585112943|gb|EWM30284.1| (hypothetical protein Naga_100003g26 [Nannochloropsis gaditana])

HSP 1 Score: 1309.28 bits (3387), Expect = 0.000e+0
Identity = 639/639 (100.00%), Postives = 639/639 (100.00%), Query Frame = 0
Query:    1 MAKIVALWSSRSPRRPVSHVLSCALAQHCTVPETFLIQTFKYRVIPGRGGVSTMSTTSSEHNGSQSPLNVHRRAIVYDSVPRAGQRVSVPPALEDMEMKAPLYRLRERRTPSYLLAYSHSDGDDADHEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLLSTGVWAAPEPEGLACLVLEEHVVTEGMDSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639
            MAKIVALWSSRSPRRPVSHVLSCALAQHCTVPETFLIQTFKYRVIPGRGGVSTMSTTSSEHNGSQSPLNVHRRAIVYDSVPRAGQRVSVPPALEDMEMKAPLYRLRERRTPSYLLAYSHSDGDDADHEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLLSTGVWAAPEPEGLACLVLEEHVVTEGMDSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST
Sbjct:    1 MAKIVALWSSRSPRRPVSHVLSCALAQHCTVPETFLIQTFKYRVIPGRGGVSTMSTTSSEHNGSQSPLNVHRRAIVYDSVPRAGQRVSVPPALEDMEMKAPLYRLRERRTPSYLLAYSHSDGDDADHEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLLSTGVWAAPEPEGLACLVLEEHVVTEGMDSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|585112100|gb|EWM29529.1| (hypothetical protein Naga_100006g33 [Nannochloropsis gaditana])

HSP 1 Score: 366.311 bits (939), Expect = 4.641e-114
Identity = 231/555 (41.62%), Postives = 293/555 (52.79%), Query Frame = 0
Query:  103 YRLRERRTPSYLLAYSHSD-------GDDAD----HEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLL------STGVWAAPEPEGLACLVLEEHVVTEGM-DSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639
            Y LRER TPSYL A            GD AD     +   R   R KP ++  H            +V ++ S G    G   +  V  R G C   GC +KSRGST RCRRHGGG  C +PGCTGFSRL+GKCSVHGGAQMCIV  CDKRARF+GRCTRHGGFVNCR +GC LRAVTKGVCAKHGG+  CRHPGC R  +KS+  WCQ HGR+ D FR    REVE+GL  V C HVD     +C+E AL S GLP +CP HLILA CG  + C+   + +GRC RH    + G E Q+P C+  A+G +  G  EK +       H+ C +  K     G C +H    ++M+  A +VEG  P  G  Q     D++ G  +       R +    R ++     G+   S   VS+          GVW A  PE  + L+ EE  V +G  D     +D+    G ++  ES  G+ E+K   V   +    +   +E FD +SFF SE+R    V    E   EA++ LYFGG+SR T     C   S 
Sbjct:   49 YMLRERSTPSYLHASRQEGVEGVGACGDQADGQGVSDRQTRSRSRQKPASFAVHGT--------HAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAK--CHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDNEGGNGK--DEGGGRSAAREVRGEKG--DMGSLQYSSACVSNTAVHGQSGGEGVWTATRPEAHSHLIQEETGVAKGQGDGMSAWDDVSGEEG-AQIVES--GEDEVK--NVEDMMFRRREACMQEDFDTDSFFSSEARDGTAVDGSGERDSEASTVLYFGGVSRETLFRPSCACASV 584          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|568011452|gb|ETL85630.1| (hypothetical protein L917_14854 [Phytophthora parasitica])

HSP 1 Score: 92.8189 bits (229), Expect = 8.196e-17
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|570943398|gb|ETP08655.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 92.4337 bits (228), Expect = 9.249e-17
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|567981953|gb|ETL32387.1| (hypothetical protein L916_15027 [Phytophthora parasitica])

HSP 1 Score: 92.4337 bits (228), Expect = 9.422e-17
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|566015830|gb|ETI38741.1| (hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567953300|gb|ETK78957.1| hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 92.4337 bits (228), Expect = 9.779e-17
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|675172477|ref|XP_008895123.1| (hypothetical protein PPTG_04623 [Phytophthora parasitica INRA-310] >gi|568104613|gb|ETN19258.1| hypothetical protein PPTG_04623 [Phytophthora parasitica INRA-310])

HSP 1 Score: 92.4337 bits (228), Expect = 1.044e-16
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|570974248|gb|ETP36693.1| (hypothetical protein F442_15419 [Phytophthora parasitica P10297])

HSP 1 Score: 92.0485 bits (227), Expect = 1.178e-16
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCENIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|568041367|gb|ETM38783.1| (hypothetical protein L914_14989 [Phytophthora parasitica])

HSP 1 Score: 92.0485 bits (227), Expect = 1.222e-16
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|570319538|gb|ETO67486.1| (hypothetical protein F444_15571 [Phytophthora parasitica P1976])

HSP 1 Score: 92.0485 bits (227), Expect = 1.245e-16
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:  199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
            G C RHGGG  C+ PGCT  ++  G+C  HGG+  C VP C  RA+  G C  HGG   C+ + CE  A++ G+C  HGG   C   GCMR   +     C  H +   H
Sbjct:  195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304          
The following BLAST results are available for this feature:
BLAST of EWM30284.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112943|gb|EWM30284.1|0.000e+0100.00hypothetical protein Naga_100003g26 [Nannochlorops... [more]
gi|585112100|gb|EWM29529.1|4.641e-11441.62hypothetical protein Naga_100006g33 [Nannochlorops... [more]
gi|568011452|gb|ETL85630.1|8.196e-1740.91hypothetical protein L917_14854 [Phytophthora para... [more]
gi|570943398|gb|ETP08655.1|9.249e-1740.91hypothetical protein, variant [Phytophthora parasi... [more]
gi|567981953|gb|ETL32387.1|9.422e-1740.91hypothetical protein L916_15027 [Phytophthora para... [more]
gi|566015830|gb|ETI38741.1|9.779e-1740.91hypothetical protein, variant [Phytophthora parasi... [more]
gi|675172477|ref|XP_008895123.1|1.044e-1640.91hypothetical protein PPTG_04623 [Phytophthora para... [more]
gi|570974248|gb|ETP36693.1|1.178e-1640.91hypothetical protein F442_15419 [Phytophthora para... [more]
gi|568041367|gb|ETM38783.1|1.222e-1640.91hypothetical protein L914_14989 [Phytophthora para... [more]
gi|570319538|gb|ETO67486.1|1.245e-1640.91hypothetical protein F444_15571 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna454rna454Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications