EWM30284.1, cds454 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|585112943|gb|EWM30284.1| (hypothetical protein Naga_100003g26 [Nannochloropsis gaditana]) HSP 1 Score: 1309.28 bits (3387), Expect = 0.000e+0 Identity = 639/639 (100.00%), Postives = 639/639 (100.00%), Query Frame = 0
Query: 1 MAKIVALWSSRSPRRPVSHVLSCALAQHCTVPETFLIQTFKYRVIPGRGGVSTMSTTSSEHNGSQSPLNVHRRAIVYDSVPRAGQRVSVPPALEDMEMKAPLYRLRERRTPSYLLAYSHSDGDDADHEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLLSTGVWAAPEPEGLACLVLEEHVVTEGMDSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639
MAKIVALWSSRSPRRPVSHVLSCALAQHCTVPETFLIQTFKYRVIPGRGGVSTMSTTSSEHNGSQSPLNVHRRAIVYDSVPRAGQRVSVPPALEDMEMKAPLYRLRERRTPSYLLAYSHSDGDDADHEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLLSTGVWAAPEPEGLACLVLEEHVVTEGMDSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST
Sbjct: 1 MAKIVALWSSRSPRRPVSHVLSCALAQHCTVPETFLIQTFKYRVIPGRGGVSTMSTTSSEHNGSQSPLNVHRRAIVYDSVPRAGQRVSVPPALEDMEMKAPLYRLRERRTPSYLLAYSHSDGDDADHEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLLSTGVWAAPEPEGLACLVLEEHVVTEGMDSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|585112100|gb|EWM29529.1| (hypothetical protein Naga_100006g33 [Nannochloropsis gaditana]) HSP 1 Score: 366.311 bits (939), Expect = 4.641e-114 Identity = 231/555 (41.62%), Postives = 293/555 (52.79%), Query Frame = 0
Query: 103 YRLRERRTPSYLLAYSHSD-------GDDAD----HEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALERISLETPRAQESGPSTGTFAGSPMPVSDLL------STGVWAAPEPEGLACLVLEEHVVTEGM-DSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639
Y LRER TPSYL A GD AD + R R KP ++ H +V ++ S G G + V R G C GC +KSRGST RCRRHGGG C +PGCTGFSRL+GKCSVHGGAQMCIV CDKRARF+GRCTRHGGFVNCR +GC LRAVTKGVCAKHGG+ CRHPGC R +KS+ WCQ HGR+ D FR REVE+GL V C HVD +C+E AL S GLP +CP HLILA CG + C+ + +GRC RH + G E Q+P C+ A+G + G EK + H+ C + K G C +H ++M+ A +VEG P G Q D++ G + R + R ++ G+ S VS+ GVW A PE + L+ EE V +G D +D+ G ++ ES G+ E+K V + + +E FD +SFF SE+R V E EA++ LYFGG+SR T C S
Sbjct: 49 YMLRERSTPSYLHASRQEGVEGVGACGDQADGQGVSDRQTRSRSRQKPASFAVHGT--------HAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAK--CHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDNEGGNGK--DEGGGRSAAREVRGEKG--DMGSLQYSSACVSNTAVHGQSGGEGVWTATRPEAHSHLIQEETGVAKGQGDGMSAWDDVSGEEG-AQIVES--GEDEVK--NVEDMMFRRREACMQEDFDTDSFFSSEARDGTAVDGSGERDSEASTVLYFGGVSRETLFRPSCACASV 584
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|568011452|gb|ETL85630.1| (hypothetical protein L917_14854 [Phytophthora parasitica]) HSP 1 Score: 92.8189 bits (229), Expect = 8.196e-17 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|570943398|gb|ETP08655.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 92.4337 bits (228), Expect = 9.249e-17 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|567981953|gb|ETL32387.1| (hypothetical protein L916_15027 [Phytophthora parasitica]) HSP 1 Score: 92.4337 bits (228), Expect = 9.422e-17 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|566015830|gb|ETI38741.1| (hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567953300|gb|ETK78957.1| hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 92.4337 bits (228), Expect = 9.779e-17 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|675172477|ref|XP_008895123.1| (hypothetical protein PPTG_04623 [Phytophthora parasitica INRA-310] >gi|568104613|gb|ETN19258.1| hypothetical protein PPTG_04623 [Phytophthora parasitica INRA-310]) HSP 1 Score: 92.4337 bits (228), Expect = 1.044e-16 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|570974248|gb|ETP36693.1| (hypothetical protein F442_15419 [Phytophthora parasitica P10297]) HSP 1 Score: 92.0485 bits (227), Expect = 1.178e-16 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCENIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|568041367|gb|ETM38783.1| (hypothetical protein L914_14989 [Phytophthora parasitica]) HSP 1 Score: 92.0485 bits (227), Expect = 1.222e-16 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304
BLAST of EWM30284.1 vs. NCBI_GenBank
Match: gi|570319538|gb|ETO67486.1| (hypothetical protein F444_15571 [Phytophthora parasitica P1976]) HSP 1 Score: 92.0485 bits (227), Expect = 1.245e-16 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 199 GRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDH 308
G C RHGGG C+ PGCT ++ G+C HGG+ C VP C RA+ G C HGG C+ + CE A++ G+C HGG C GCMR + C H + H
Sbjct: 195 GLCVRHGGGKRCQAPGCTSRAKHQGRCWKHGGSTECKVPSCINRAKSRGFCWSHGGGTKCKTDNCEKIAISNGLCWAHGGGKRCAVEGCMRQAYERTDNLCNNHYQERQH 304 The following BLAST results are available for this feature:
BLAST of EWM30284.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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