EWM26177.1, cds4489 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|585108174|gb|EWM26177.1| (recombination activating protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 2342 bits (6068), Expect = 0.000e+0 Identity = 1153/1153 (100.00%), Postives = 1153/1153 (100.00%), Query Frame = 0
Query: 1 MRKASRRGGGEGAEKGAAASPPLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRCPPRSEISAASSLTESRDGVVEENLIGIKKEERVDEETNVRGSSASLQSTHEPRCPDSAVGSDEKHEREGEEERLEEKEAMGGLPRQEVDDHVELRFLKVRRDEEDVSEKETSKSRVLDAGNEVVVLDVDADCDEAVGKGGIETSDSYAENGSDCPLVDLTSTPPSKAGTQQSPRSGLVRTGGDRGTERGVMWYGPPRKGNASTWSRLMESVKTAAVRKAGQWLNRGRSTTHTNRSSSRSSSTSGISLKERSGLSHPALSSSVKGDIAKGSAALGNGSDRDLKPVAALSSAFSAISAPSSSTAAGPSDSTQTRLTQFMSQQQERCQRPQPQDQLAPPASGSSGKRALRHGVLGSLTTTVNHNLTMAPSKRSYASSSFPAPSSAFHPEACLTGHGPTACIDLGDDDIFEDLFLVDPAASEPHPHPLPPPPPSPGSPPPLASHPSCPVGSMSQSGGKEQQKQLGGAGAKTEGGNGLLKTSPMSPILLSLGASTCHKTRRHAALLRKEVSDSLCVSPPAPGVFENCMAEESGSAVDRSDLAAARLLTQRRESSEESTYAETLNERPRVEPILSRLSPAAPSPLPAVPSTSAHSAIRPSSQAYSVMSDDLLAGDVSPHGGEDADTAAIMPSPLPAAGSIEKKRPRMSSTDFSEASSASLLPTYAPSPVPSALSRSCSSTTSPVDAFLSPSGDILRKKRGQSHPPIQAGFIEESQLSSVRRTGRSPMDLVVPSTQAEGKMMEPQRGLEEMEEEFKIQRYDEDPHAEGIIYETPALKAHDDLLRANMHDLKDESKGIESPRGGGGGNGYKSGRDETLSSGDEENRRANQCNPVCEEGTQSPRRRRRKKENGGGRRILETQVYSPDVMECRKSGLDASYATPCASTSQSARQGSSQVLEETTTAGTATKRPPQTGSKTNGDLDDGNVKEVNEGSSIGCADPSACRMEDDSQFPTTMEVCGVMDYLDGVGAEDGRKAVDTQARRELAEPGTRKRRELKNALAMRDSNILKPMPCKPNPRAVIASSGLNVEQIQKHKA 1153
MRKASRRGGGEGAEKGAAASPPLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRCPPRSEISAASSLTESRDGVVEENLIGIKKEERVDEETNVRGSSASLQSTHEPRCPDSAVGSDEKHEREGEEERLEEKEAMGGLPRQEVDDHVELRFLKVRRDEEDVSEKETSKSRVLDAGNEVVVLDVDADCDEAVGKGGIETSDSYAENGSDCPLVDLTSTPPSKAGTQQSPRSGLVRTGGDRGTERGVMWYGPPRKGNASTWSRLMESVKTAAVRKAGQWLNRGRSTTHTNRSSSRSSSTSGISLKERSGLSHPALSSSVKGDIAKGSAALGNGSDRDLKPVAALSSAFSAISAPSSSTAAGPSDSTQTRLTQFMSQQQERCQRPQPQDQLAPPASGSSGKRALRHGVLGSLTTTVNHNLTMAPSKRSYASSSFPAPSSAFHPEACLTGHGPTACIDLGDDDIFEDLFLVDPAASEPHPHPLPPPPPSPGSPPPLASHPSCPVGSMSQSGGKEQQKQLGGAGAKTEGGNGLLKTSPMSPILLSLGASTCHKTRRHAALLRKEVSDSLCVSPPAPGVFENCMAEESGSAVDRSDLAAARLLTQRRESSEESTYAETLNERPRVEPILSRLSPAAPSPLPAVPSTSAHSAIRPSSQAYSVMSDDLLAGDVSPHGGEDADTAAIMPSPLPAAGSIEKKRPRMSSTDFSEASSASLLPTYAPSPVPSALSRSCSSTTSPVDAFLSPSGDILRKKRGQSHPPIQAGFIEESQLSSVRRTGRSPMDLVVPSTQAEGKMMEPQRGLEEMEEEFKIQRYDEDPHAEGIIYETPALKAHDDLLRANMHDLKDESKGIESPRGGGGGNGYKSGRDETLSSGDEENRRANQCNPVCEEGTQSPRRRRRKKENGGGRRILETQVYSPDVMECRKSGLDASYATPCASTSQSARQGSSQVLEETTTAGTATKRPPQTGSKTNGDLDDGNVKEVNEGSSIGCADPSACRMEDDSQFPTTMEVCGVMDYLDGVGAEDGRKAVDTQARRELAEPGTRKRRELKNALAMRDSNILKPMPCKPNPRAVIASSGLNVEQIQKHKA
Sbjct: 1 MRKASRRGGGEGAEKGAAASPPLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRCPPRSEISAASSLTESRDGVVEENLIGIKKEERVDEETNVRGSSASLQSTHEPRCPDSAVGSDEKHEREGEEERLEEKEAMGGLPRQEVDDHVELRFLKVRRDEEDVSEKETSKSRVLDAGNEVVVLDVDADCDEAVGKGGIETSDSYAENGSDCPLVDLTSTPPSKAGTQQSPRSGLVRTGGDRGTERGVMWYGPPRKGNASTWSRLMESVKTAAVRKAGQWLNRGRSTTHTNRSSSRSSSTSGISLKERSGLSHPALSSSVKGDIAKGSAALGNGSDRDLKPVAALSSAFSAISAPSSSTAAGPSDSTQTRLTQFMSQQQERCQRPQPQDQLAPPASGSSGKRALRHGVLGSLTTTVNHNLTMAPSKRSYASSSFPAPSSAFHPEACLTGHGPTACIDLGDDDIFEDLFLVDPAASEPHPHPLPPPPPSPGSPPPLASHPSCPVGSMSQSGGKEQQKQLGGAGAKTEGGNGLLKTSPMSPILLSLGASTCHKTRRHAALLRKEVSDSLCVSPPAPGVFENCMAEESGSAVDRSDLAAARLLTQRRESSEESTYAETLNERPRVEPILSRLSPAAPSPLPAVPSTSAHSAIRPSSQAYSVMSDDLLAGDVSPHGGEDADTAAIMPSPLPAAGSIEKKRPRMSSTDFSEASSASLLPTYAPSPVPSALSRSCSSTTSPVDAFLSPSGDILRKKRGQSHPPIQAGFIEESQLSSVRRTGRSPMDLVVPSTQAEGKMMEPQRGLEEMEEEFKIQRYDEDPHAEGIIYETPALKAHDDLLRANMHDLKDESKGIESPRGGGGGNGYKSGRDETLSSGDEENRRANQCNPVCEEGTQSPRRRRRKKENGGGRRILETQVYSPDVMECRKSGLDASYATPCASTSQSARQGSSQVLEETTTAGTATKRPPQTGSKTNGDLDDGNVKEVNEGSSIGCADPSACRMEDDSQFPTTMEVCGVMDYLDGVGAEDGRKAVDTQARRELAEPGTRKRRELKNALAMRDSNILKPMPCKPNPRAVIASSGLNVEQIQKHKA 1153
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1210524326|dbj|GAX17055.1| (hypothetical protein FisN_5Hh440 [Fistulifera solaris]) HSP 1 Score: 69.3218 bits (168), Expect = 1.020e-9 Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 0
Query: 45 KIEELVSCSMCKHFLKDPVAVP-CSHTFCRSCLDDHMSDNSHCPECEHPVYPKD---VRSNRALKSVLDSFYDIDRALRQ 120
+++EL+ CS+CK DPV++ C H+FCR C+++H DN+HCPEC PV + + L++V+DSF I L Q
Sbjct: 45 EMKELLKCSLCKCIYVDPVSLAACGHSFCRKCIENHNCDNAHCPECGLPVNMAKGSFEKVHATLQTVMDSFKIICTTLAQ 124
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|366993262|ref|XP_003676396.1| (hypothetical protein NCAS_0D04540 [Naumovozyma castellii CBS 4309] >gi|342302262|emb|CCC70035.1| hypothetical protein NCAS_0D04540 [Naumovozyma castellii CBS 4309]) HSP 1 Score: 72.4034 bits (176), Expect = 2.519e-9 Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 0
Query: 43 INKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRC---PPRS 129
+ +I+ L+ C +CK FLK PV PCSHTFC C+ +++ DNS CP C + + +RS + ++ S+ ++LR L C PRS
Sbjct: 19 LQEIDTLLRCHICKDFLKVPVLTPCSHTFCSLCIREYLKDNSKCPLCLNELRESMLRSEFLVNEIVQSY----QSLRSDLLECLKIEPRS 104
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|303277727|ref|XP_003058157.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460814|gb|EEH58108.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 72.7886 bits (177), Expect = 2.832e-9 Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query: 43 INKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSD----NSHCPE--CEHPVYPKDVRSNRALKSVLDSF 111
++ I ++C++C P +PC+HTFCR+C++D + + CP+ C HPVY KD+R NRAL+ ++ +F
Sbjct: 38 LDAIAADLTCALCSQLFTRPCTLPCAHTFCRACVEDTLRGKGVYKNECPDEACTHPVYVKDLRVNRALECLVHNF 112
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|348566077|ref|XP_003468829.1| (PREDICTED: E3 ubiquitin-protein ligase TRIM38 isoform X2 [Cavia porcellus]) HSP 1 Score: 71.633 bits (174), Expect = 3.558e-9 Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0
Query: 45 KIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMS-------DNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALR 119
KI+E+ +CS+C++ + +PV++ C H+FC+ CL+ H+ N CP C P R+NR L+S+++ F ++D L+
Sbjct: 9 KIKEIATCSICQNLMMNPVSITCGHSFCQMCLEQHLYKVQLSQGKNIFCPLCHSPFNKDSFRANRHLESIIEVFEEMDHELQ 90
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|884911531|ref|XP_013006880.1| (PREDICTED: E3 ubiquitin-protein ligase TRIM38 isoform X1 [Cavia porcellus] >gi|884911533|ref|XP_013006881.1| PREDICTED: E3 ubiquitin-protein ligase TRIM38 isoform X1 [Cavia porcellus]) HSP 1 Score: 72.0182 bits (175), Expect = 3.755e-9 Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0
Query: 45 KIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMS-------DNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALR 119
KI+E+ +CS+C++ + +PV++ C H+FC+ CL+ H+ N CP C P R+NR L+S+++ F ++D L+
Sbjct: 9 KIKEIATCSICQNLMMNPVSITCGHSFCQMCLEQHLYKVQLSQGKNIFCPLCHSPFNKDSFRANRHLESIIEVFEEMDHELQ 90
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1042249199|ref|XP_017332696.1| (PREDICTED: nuclear factor 7, brain-like isoform X2 [Ictalurus punctatus]) HSP 1 Score: 71.633 bits (174), Expect = 3.988e-9 Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query: 48 ELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDN---SHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLR 124
+L+ C +C + L+DPV +PC H +CR C+ +HM+ N + CPEC P D+R NR L++++D+ D R Q LR
Sbjct: 4 KLIRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 81
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1210515824|dbj|GAX25347.1| (hypothetical protein FisN_5Lh440 [Fistulifera solaris]) HSP 1 Score: 67.0106 bits (162), Expect = 6.512e-9 Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0
Query: 45 KIEELVSCSMCKHFLKDPVAVP-CSHTFCRSCLDDHMSDNSHCPECEHPVYPKD---VRSNRALKSVLDSFYDIDRALRQ 120
+++EL+ CS+CK DPV++ C H+FCR C+++H D++HCPEC PV + + L++V+DSF I L Q
Sbjct: 45 EMKELLKCSLCKCIYVDPVSLAACGHSFCRKCIENHNCDDAHCPECGLPVNMTKGSFEKVHATLQTVMDSFKIICTTLAQ 124
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|676486660|ref|XP_009064046.1| (hypothetical protein LOTGIDRAFT_167929 [Lottia gigantea] >gi|556096698|gb|ESO85350.1| hypothetical protein LOTGIDRAFT_167929 [Lottia gigantea]) HSP 1 Score: 65.855 bits (159), Expect = 1.007e-8 Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 0
Query: 46 IEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNS-----HCPECEHPVYPKDVRSNRALKSVLDSFYDI 114
IE+ +SC +C KDPV PCSH+ C SCL +++ ++S CPEC+ V + +R N L S++D ++++
Sbjct: 5 IEDALSCHICAEIFKDPVEFPCSHSLCHSCL-EYLLESSVGTVLQCPECKDVVQERSIRKNELLASIVDFYWEM 77
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1042249196|ref|XP_017332687.1| (PREDICTED: nuclear factor 7, brain-like isoform X1 [Ictalurus punctatus]) HSP 1 Score: 69.707 bits (169), Expect = 1.681e-8 Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 50 VSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDN---SHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLR 124
+ C +C + L+DPV +PC H +CR C+ +HM+ N + CPEC P D+R NR L++++D+ D R Q LR
Sbjct: 9 IRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 84 The following BLAST results are available for this feature:
BLAST of EWM26177.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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