EWM26177.1, cds4489 (CDS) Nannochloropsis gaditana

Overview
NameEWM26177.1
Unique Namecds4489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:758329..758492 -
Alignment locationCM002463.1:755040..758187 -
Alignment locationCM002463.1:754765..754914 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26177.1
Productrecombination activating protein 1
Orig transcript idgnl|cribi|Naga_100072g10.8010.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:758329..758492 -
CM002463.1supercontigCM002463.1:755040..758187 -
CM002463.1supercontigCM002463.1:754765..754914 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|585108174|gb|EWM26177.1| (recombination activating protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 2342 bits (6068), Expect = 0.000e+0
Identity = 1153/1153 (100.00%), Postives = 1153/1153 (100.00%), Query Frame = 0
Query:    1 MRKASRRGGGEGAEKGAAASPPLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRCPPRSEISAASSLTESRDGVVEENLIGIKKEERVDEETNVRGSSASLQSTHEPRCPDSAVGSDEKHEREGEEERLEEKEAMGGLPRQEVDDHVELRFLKVRRDEEDVSEKETSKSRVLDAGNEVVVLDVDADCDEAVGKGGIETSDSYAENGSDCPLVDLTSTPPSKAGTQQSPRSGLVRTGGDRGTERGVMWYGPPRKGNASTWSRLMESVKTAAVRKAGQWLNRGRSTTHTNRSSSRSSSTSGISLKERSGLSHPALSSSVKGDIAKGSAALGNGSDRDLKPVAALSSAFSAISAPSSSTAAGPSDSTQTRLTQFMSQQQERCQRPQPQDQLAPPASGSSGKRALRHGVLGSLTTTVNHNLTMAPSKRSYASSSFPAPSSAFHPEACLTGHGPTACIDLGDDDIFEDLFLVDPAASEPHPHPLPPPPPSPGSPPPLASHPSCPVGSMSQSGGKEQQKQLGGAGAKTEGGNGLLKTSPMSPILLSLGASTCHKTRRHAALLRKEVSDSLCVSPPAPGVFENCMAEESGSAVDRSDLAAARLLTQRRESSEESTYAETLNERPRVEPILSRLSPAAPSPLPAVPSTSAHSAIRPSSQAYSVMSDDLLAGDVSPHGGEDADTAAIMPSPLPAAGSIEKKRPRMSSTDFSEASSASLLPTYAPSPVPSALSRSCSSTTSPVDAFLSPSGDILRKKRGQSHPPIQAGFIEESQLSSVRRTGRSPMDLVVPSTQAEGKMMEPQRGLEEMEEEFKIQRYDEDPHAEGIIYETPALKAHDDLLRANMHDLKDESKGIESPRGGGGGNGYKSGRDETLSSGDEENRRANQCNPVCEEGTQSPRRRRRKKENGGGRRILETQVYSPDVMECRKSGLDASYATPCASTSQSARQGSSQVLEETTTAGTATKRPPQTGSKTNGDLDDGNVKEVNEGSSIGCADPSACRMEDDSQFPTTMEVCGVMDYLDGVGAEDGRKAVDTQARRELAEPGTRKRRELKNALAMRDSNILKPMPCKPNPRAVIASSGLNVEQIQKHKA 1153
            MRKASRRGGGEGAEKGAAASPPLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRCPPRSEISAASSLTESRDGVVEENLIGIKKEERVDEETNVRGSSASLQSTHEPRCPDSAVGSDEKHEREGEEERLEEKEAMGGLPRQEVDDHVELRFLKVRRDEEDVSEKETSKSRVLDAGNEVVVLDVDADCDEAVGKGGIETSDSYAENGSDCPLVDLTSTPPSKAGTQQSPRSGLVRTGGDRGTERGVMWYGPPRKGNASTWSRLMESVKTAAVRKAGQWLNRGRSTTHTNRSSSRSSSTSGISLKERSGLSHPALSSSVKGDIAKGSAALGNGSDRDLKPVAALSSAFSAISAPSSSTAAGPSDSTQTRLTQFMSQQQERCQRPQPQDQLAPPASGSSGKRALRHGVLGSLTTTVNHNLTMAPSKRSYASSSFPAPSSAFHPEACLTGHGPTACIDLGDDDIFEDLFLVDPAASEPHPHPLPPPPPSPGSPPPLASHPSCPVGSMSQSGGKEQQKQLGGAGAKTEGGNGLLKTSPMSPILLSLGASTCHKTRRHAALLRKEVSDSLCVSPPAPGVFENCMAEESGSAVDRSDLAAARLLTQRRESSEESTYAETLNERPRVEPILSRLSPAAPSPLPAVPSTSAHSAIRPSSQAYSVMSDDLLAGDVSPHGGEDADTAAIMPSPLPAAGSIEKKRPRMSSTDFSEASSASLLPTYAPSPVPSALSRSCSSTTSPVDAFLSPSGDILRKKRGQSHPPIQAGFIEESQLSSVRRTGRSPMDLVVPSTQAEGKMMEPQRGLEEMEEEFKIQRYDEDPHAEGIIYETPALKAHDDLLRANMHDLKDESKGIESPRGGGGGNGYKSGRDETLSSGDEENRRANQCNPVCEEGTQSPRRRRRKKENGGGRRILETQVYSPDVMECRKSGLDASYATPCASTSQSARQGSSQVLEETTTAGTATKRPPQTGSKTNGDLDDGNVKEVNEGSSIGCADPSACRMEDDSQFPTTMEVCGVMDYLDGVGAEDGRKAVDTQARRELAEPGTRKRRELKNALAMRDSNILKPMPCKPNPRAVIASSGLNVEQIQKHKA
Sbjct:    1 MRKASRRGGGEGAEKGAAASPPLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRCPPRSEISAASSLTESRDGVVEENLIGIKKEERVDEETNVRGSSASLQSTHEPRCPDSAVGSDEKHEREGEEERLEEKEAMGGLPRQEVDDHVELRFLKVRRDEEDVSEKETSKSRVLDAGNEVVVLDVDADCDEAVGKGGIETSDSYAENGSDCPLVDLTSTPPSKAGTQQSPRSGLVRTGGDRGTERGVMWYGPPRKGNASTWSRLMESVKTAAVRKAGQWLNRGRSTTHTNRSSSRSSSTSGISLKERSGLSHPALSSSVKGDIAKGSAALGNGSDRDLKPVAALSSAFSAISAPSSSTAAGPSDSTQTRLTQFMSQQQERCQRPQPQDQLAPPASGSSGKRALRHGVLGSLTTTVNHNLTMAPSKRSYASSSFPAPSSAFHPEACLTGHGPTACIDLGDDDIFEDLFLVDPAASEPHPHPLPPPPPSPGSPPPLASHPSCPVGSMSQSGGKEQQKQLGGAGAKTEGGNGLLKTSPMSPILLSLGASTCHKTRRHAALLRKEVSDSLCVSPPAPGVFENCMAEESGSAVDRSDLAAARLLTQRRESSEESTYAETLNERPRVEPILSRLSPAAPSPLPAVPSTSAHSAIRPSSQAYSVMSDDLLAGDVSPHGGEDADTAAIMPSPLPAAGSIEKKRPRMSSTDFSEASSASLLPTYAPSPVPSALSRSCSSTTSPVDAFLSPSGDILRKKRGQSHPPIQAGFIEESQLSSVRRTGRSPMDLVVPSTQAEGKMMEPQRGLEEMEEEFKIQRYDEDPHAEGIIYETPALKAHDDLLRANMHDLKDESKGIESPRGGGGGNGYKSGRDETLSSGDEENRRANQCNPVCEEGTQSPRRRRRKKENGGGRRILETQVYSPDVMECRKSGLDASYATPCASTSQSARQGSSQVLEETTTAGTATKRPPQTGSKTNGDLDDGNVKEVNEGSSIGCADPSACRMEDDSQFPTTMEVCGVMDYLDGVGAEDGRKAVDTQARRELAEPGTRKRRELKNALAMRDSNILKPMPCKPNPRAVIASSGLNVEQIQKHKA 1153          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1210524326|dbj|GAX17055.1| (hypothetical protein FisN_5Hh440 [Fistulifera solaris])

HSP 1 Score: 69.3218 bits (168), Expect = 1.020e-9
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   45 KIEELVSCSMCKHFLKDPVAVP-CSHTFCRSCLDDHMSDNSHCPECEHPVYPKD---VRSNRALKSVLDSFYDIDRALRQ 120
            +++EL+ CS+CK    DPV++  C H+FCR C+++H  DN+HCPEC  PV        + +  L++V+DSF  I   L Q
Sbjct:   45 EMKELLKCSLCKCIYVDPVSLAACGHSFCRKCIENHNCDNAHCPECGLPVNMAKGSFEKVHATLQTVMDSFKIICTTLAQ 124          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|366993262|ref|XP_003676396.1| (hypothetical protein NCAS_0D04540 [Naumovozyma castellii CBS 4309] >gi|342302262|emb|CCC70035.1| hypothetical protein NCAS_0D04540 [Naumovozyma castellii CBS 4309])

HSP 1 Score: 72.4034 bits (176), Expect = 2.519e-9
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 0
Query:   43 INKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLRC---PPRS 129
            + +I+ L+ C +CK FLK PV  PCSHTFC  C+ +++ DNS CP C + +    +RS   +  ++ S+    ++LR   L C    PRS
Sbjct:   19 LQEIDTLLRCHICKDFLKVPVLTPCSHTFCSLCIREYLKDNSKCPLCLNELRESMLRSEFLVNEIVQSY----QSLRSDLLECLKIEPRS 104          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|303277727|ref|XP_003058157.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460814|gb|EEH58108.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 72.7886 bits (177), Expect = 2.832e-9
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query:   43 INKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSD----NSHCPE--CEHPVYPKDVRSNRALKSVLDSF 111
            ++ I   ++C++C      P  +PC+HTFCR+C++D +       + CP+  C HPVY KD+R NRAL+ ++ +F
Sbjct:   38 LDAIAADLTCALCSQLFTRPCTLPCAHTFCRACVEDTLRGKGVYKNECPDEACTHPVYVKDLRVNRALECLVHNF 112          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|348566077|ref|XP_003468829.1| (PREDICTED: E3 ubiquitin-protein ligase TRIM38 isoform X2 [Cavia porcellus])

HSP 1 Score: 71.633 bits (174), Expect = 3.558e-9
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   45 KIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMS-------DNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALR 119
            KI+E+ +CS+C++ + +PV++ C H+FC+ CL+ H+         N  CP C  P      R+NR L+S+++ F ++D  L+
Sbjct:    9 KIKEIATCSICQNLMMNPVSITCGHSFCQMCLEQHLYKVQLSQGKNIFCPLCHSPFNKDSFRANRHLESIIEVFEEMDHELQ 90          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|884911531|ref|XP_013006880.1| (PREDICTED: E3 ubiquitin-protein ligase TRIM38 isoform X1 [Cavia porcellus] >gi|884911533|ref|XP_013006881.1| PREDICTED: E3 ubiquitin-protein ligase TRIM38 isoform X1 [Cavia porcellus])

HSP 1 Score: 72.0182 bits (175), Expect = 3.755e-9
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   45 KIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMS-------DNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALR 119
            KI+E+ +CS+C++ + +PV++ C H+FC+ CL+ H+         N  CP C  P      R+NR L+S+++ F ++D  L+
Sbjct:    9 KIKEIATCSICQNLMMNPVSITCGHSFCQMCLEQHLYKVQLSQGKNIFCPLCHSPFNKDSFRANRHLESIIEVFEEMDHELQ 90          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1042249199|ref|XP_017332696.1| (PREDICTED: nuclear factor 7, brain-like isoform X2 [Ictalurus punctatus])

HSP 1 Score: 71.633 bits (174), Expect = 3.988e-9
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:   48 ELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDN---SHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLR 124
            +L+ C +C + L+DPV +PC H +CR C+ +HM+ N   + CPEC  P    D+R NR L++++D+  D  R    Q LR
Sbjct:    4 KLIRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 81          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1210515824|dbj|GAX25347.1| (hypothetical protein FisN_5Lh440 [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 6.512e-9
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   45 KIEELVSCSMCKHFLKDPVAVP-CSHTFCRSCLDDHMSDNSHCPECEHPVYPKD---VRSNRALKSVLDSFYDIDRALRQ 120
            +++EL+ CS+CK    DPV++  C H+FCR C+++H  D++HCPEC  PV        + +  L++V+DSF  I   L Q
Sbjct:   45 EMKELLKCSLCKCIYVDPVSLAACGHSFCRKCIENHNCDDAHCPECGLPVNMTKGSFEKVHATLQTVMDSFKIICTTLAQ 124          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|676486660|ref|XP_009064046.1| (hypothetical protein LOTGIDRAFT_167929 [Lottia gigantea] >gi|556096698|gb|ESO85350.1| hypothetical protein LOTGIDRAFT_167929 [Lottia gigantea])

HSP 1 Score: 65.855 bits (159), Expect = 1.007e-8
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 0
Query:   46 IEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNS-----HCPECEHPVYPKDVRSNRALKSVLDSFYDI 114
            IE+ +SC +C    KDPV  PCSH+ C SCL +++ ++S      CPEC+  V  + +R N  L S++D ++++
Sbjct:    5 IEDALSCHICAEIFKDPVEFPCSHSLCHSCL-EYLLESSVGTVLQCPECKDVVQERSIRKNELLASIVDFYWEM 77          
BLAST of EWM26177.1 vs. NCBI_GenBank
Match: gi|1042249196|ref|XP_017332687.1| (PREDICTED: nuclear factor 7, brain-like isoform X1 [Ictalurus punctatus])

HSP 1 Score: 69.707 bits (169), Expect = 1.681e-8
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0
Query:   50 VSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDN---SHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLR 124
            + C +C + L+DPV +PC H +CR C+ +HM+ N   + CPEC  P    D+R NR L++++D+  D  R    Q LR
Sbjct:    9 IRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 84          
The following BLAST results are available for this feature:
BLAST of EWM26177.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108174|gb|EWM26177.1|0.000e+0100.00recombination activating protein 1 [Nannochloropsi... [more]
gi|1210524326|dbj|GAX17055.1|1.020e-941.25hypothetical protein FisN_5Hh440 [Fistulifera sola... [more]
gi|366993262|ref|XP_003676396.1|2.519e-937.78hypothetical protein NCAS_0D04540 [Naumovozyma cas... [more]
gi|303277727|ref|XP_003058157.1|2.832e-937.33predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|348566077|ref|XP_003468829.1|3.558e-934.15PREDICTED: E3 ubiquitin-protein ligase TRIM38 isof... [more]
gi|884911531|ref|XP_013006880.1|3.755e-934.15PREDICTED: E3 ubiquitin-protein ligase TRIM38 isof... [more]
gi|1042249199|ref|XP_017332696.1|3.988e-940.00PREDICTED: nuclear factor 7, brain-like isoform X2... [more]
gi|1210515824|dbj|GAX25347.1|6.512e-940.00hypothetical protein FisN_5Lh440 [Fistulifera sola... [more]
gi|676486660|ref|XP_009064046.1|1.007e-837.84hypothetical protein LOTGIDRAFT_167929 [Lottia gig... [more]
gi|1042249196|ref|XP_017332687.1|1.681e-839.74PREDICTED: nuclear factor 7, brain-like isoform X1... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4500rna4500Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications