EWM26216.1, cds4460 (CDS) Nannochloropsis gaditana

Overview
NameEWM26216.1
Unique Namecds4460
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:665477..665671 +
Alignment locationCM002463.1:665851..668448 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26216.1
ProductCupredoxin
Orig transcript idgnl|cribi|Naga_100025g18.7507.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:665477..665671 +
CM002463.1supercontigCM002463.1:665851..668448 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
Homology
BLAST of EWM26216.1 vs. NCBI_GenBank
Match: gi|585108215|gb|EWM26216.1| (Cupredoxin [Nannochloropsis gaditana])

HSP 1 Score: 1898.63 bits (4917), Expect = 0.000e+0
Identity = 930/930 (100.00%), Postives = 930/930 (100.00%), Query Frame = 0
Query:    1 MAYRAIVTFLLLEVSLNHAWGMQDTKTTTLLSAKPSTLDKEPFQDVTSADGFLRVDLTVAPWLEQGAVSGKAALFHQGVKSSLAPILRAFPGDTVQIRVRSELPNNVENGRDDATSLALHGIRLTAATDKGGLHSRLAGPQLAIHTFTVDKQHAPGLHWYSVGGGLGFMGALYVLSTDADAASQSKVPGSRLLVFESQGAGSTYFINGDSPAPLHVRSGESQQLDLAYASGPDLLEIVAGKGCELELLAIDGVDLNEPRDVDYVPLVSRQRARVALTCQESGESALLARPRAHGIGSKAPKGQDSAQDGMQRLLAVSVFKAKGLPFSRLPRVVAPRPFKDTALAGATYLKDLASENSVSNSCTISLYPCHGKAFCSADRSACLTFPSISDGGVDPGRLGAAHDIDDFAAQGRVRELFVHTKIAARGASLRLSPPQHFQVLDFIPDEEEAVNPYLAEWGAFGEWRDVFPPLKGTFRVRYQAREEHDHEGTHVEYDGFQPLGNGQREDEAALGGDMRDKRSHRASWTFPGTSATEKPGDKNVEFRDAYLLVQATVGETDRDPAWVETSIKALIQEDLVEEEEPEPAADDDTIMPAEHMPTIVDKHEPNRGGERRDSRENKSRDTALETNRLLLAVEAPSTLAVPVQMPRRYLPAASLCNDSALVWPTAFTLHLKNSSSIYSVVGKLNELLQPKHGEDDRPQLCTVNVTLLSSVKAAAFTTGGVAAIGKNNTKSAPKRMPSHVVILLGFLGGACILFASVMAVRRFMAPAGPPRSSRRSSVHHDPTTIETQITELDDSTSLGVKSSALRHSSRSRTNSLTGVNLAILPPARLSAGNIAATPGAGGLGGSLSGTRTMPQHYRSSSSLPTDLAAFGHGRSSSMPLHGGAGLLPSRKQSIESINISNSGALGASLGSDMEHPEAAERTGKGESRRN 930
            MAYRAIVTFLLLEVSLNHAWGMQDTKTTTLLSAKPSTLDKEPFQDVTSADGFLRVDLTVAPWLEQGAVSGKAALFHQGVKSSLAPILRAFPGDTVQIRVRSELPNNVENGRDDATSLALHGIRLTAATDKGGLHSRLAGPQLAIHTFTVDKQHAPGLHWYSVGGGLGFMGALYVLSTDADAASQSKVPGSRLLVFESQGAGSTYFINGDSPAPLHVRSGESQQLDLAYASGPDLLEIVAGKGCELELLAIDGVDLNEPRDVDYVPLVSRQRARVALTCQESGESALLARPRAHGIGSKAPKGQDSAQDGMQRLLAVSVFKAKGLPFSRLPRVVAPRPFKDTALAGATYLKDLASENSVSNSCTISLYPCHGKAFCSADRSACLTFPSISDGGVDPGRLGAAHDIDDFAAQGRVRELFVHTKIAARGASLRLSPPQHFQVLDFIPDEEEAVNPYLAEWGAFGEWRDVFPPLKGTFRVRYQAREEHDHEGTHVEYDGFQPLGNGQREDEAALGGDMRDKRSHRASWTFPGTSATEKPGDKNVEFRDAYLLVQATVGETDRDPAWVETSIKALIQEDLVEEEEPEPAADDDTIMPAEHMPTIVDKHEPNRGGERRDSRENKSRDTALETNRLLLAVEAPSTLAVPVQMPRRYLPAASLCNDSALVWPTAFTLHLKNSSSIYSVVGKLNELLQPKHGEDDRPQLCTVNVTLLSSVKAAAFTTGGVAAIGKNNTKSAPKRMPSHVVILLGFLGGACILFASVMAVRRFMAPAGPPRSSRRSSVHHDPTTIETQITELDDSTSLGVKSSALRHSSRSRTNSLTGVNLAILPPARLSAGNIAATPGAGGLGGSLSGTRTMPQHYRSSSSLPTDLAAFGHGRSSSMPLHGGAGLLPSRKQSIESINISNSGALGASLGSDMEHPEAAERTGKGESRRN
Sbjct:    1 MAYRAIVTFLLLEVSLNHAWGMQDTKTTTLLSAKPSTLDKEPFQDVTSADGFLRVDLTVAPWLEQGAVSGKAALFHQGVKSSLAPILRAFPGDTVQIRVRSELPNNVENGRDDATSLALHGIRLTAATDKGGLHSRLAGPQLAIHTFTVDKQHAPGLHWYSVGGGLGFMGALYVLSTDADAASQSKVPGSRLLVFESQGAGSTYFINGDSPAPLHVRSGESQQLDLAYASGPDLLEIVAGKGCELELLAIDGVDLNEPRDVDYVPLVSRQRARVALTCQESGESALLARPRAHGIGSKAPKGQDSAQDGMQRLLAVSVFKAKGLPFSRLPRVVAPRPFKDTALAGATYLKDLASENSVSNSCTISLYPCHGKAFCSADRSACLTFPSISDGGVDPGRLGAAHDIDDFAAQGRVRELFVHTKIAARGASLRLSPPQHFQVLDFIPDEEEAVNPYLAEWGAFGEWRDVFPPLKGTFRVRYQAREEHDHEGTHVEYDGFQPLGNGQREDEAALGGDMRDKRSHRASWTFPGTSATEKPGDKNVEFRDAYLLVQATVGETDRDPAWVETSIKALIQEDLVEEEEPEPAADDDTIMPAEHMPTIVDKHEPNRGGERRDSRENKSRDTALETNRLLLAVEAPSTLAVPVQMPRRYLPAASLCNDSALVWPTAFTLHLKNSSSIYSVVGKLNELLQPKHGEDDRPQLCTVNVTLLSSVKAAAFTTGGVAAIGKNNTKSAPKRMPSHVVILLGFLGGACILFASVMAVRRFMAPAGPPRSSRRSSVHHDPTTIETQITELDDSTSLGVKSSALRHSSRSRTNSLTGVNLAILPPARLSAGNIAATPGAGGLGGSLSGTRTMPQHYRSSSSLPTDLAAFGHGRSSSMPLHGGAGLLPSRKQSIESINISNSGALGASLGSDMEHPEAAERTGKGESRRN 930          
BLAST of EWM26216.1 vs. NCBI_GenBank
Match: gi|1094515520|emb|SEN82027.1| (Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) [Cryobacterium luteum])

HSP 1 Score: 66.6254 bits (161), Expect = 1.330e-7
Identity = 81/335 (24.18%), Postives = 136/335 (40.60%), Query Frame = 0
Query:   45 DVTSADGFLRVDLTVAPWLEQGAVSGKA--ALFHQGVKSSLAPILRAFPGDTVQIRVRSELPNNVENGRDDATSLALHGIRLTAATDKGGLHSRLAGPQLAIHTFTVDKQHAPGLHWY----------SVGGGLGFMGALYVLSTDADAASQSKVPGSRLLVFESQGA--------------GSTYFINGDSPAPLHVRSGESQQLDLAYASGPDLLEIVAGKGCELELLAIDGVDLNEPRDVDYVPLVSRQRARVALTCQESGESALLARPRAHGIGSKAPKGQDSAQDGMQRLLAVSVFKAKGL---PFSRLPRVVAPRPFKDTALAGATYLK 350
            ++ S +G L V L  +P  +Q +++G+   AL + G            PG T+++R    L  N+ NG  D ++L +HG+ ++   +   +   +       + + +   H PG++WY           V GGL   GA+ V   +   A++ +V     + F+S G               G    +NG     L    GE ++  +  A     L +    G +L LL ID      PRDVD + L    RA + +T   +G S L    RA      A  G   A+      +A++ F   G     F+ +P  +APR  +  A+     L+
Sbjct:   52 EMRSTNGMLTVALESSP--QQVSIAGRTVRALSYNG----------GVPGPTLRLRAGDTLNVNLRNGLTDPSNLHVHGLHVSPENNGDNMFVMVDPGGSFDYQYKLPANHPPGVYWYHPHHHGYVADQVFGGL--YGAIIVEDPEEIPATRERVVVISDMTFDSSGTISAATEMEKMSGREGELVLVNGQLSPALSASPGERERWRVINACTSRYLRLRL-DGQQLTLLGIDSGRFESPRDVDEIVLAPGNRADLLVTAL-AGTSTL----RALRYNRGASGGMMGARTTSSADVALATFAVAGTDTAAFTAVPEQLAPRDLRSAAVTARRELR 366          
The following BLAST results are available for this feature:
BLAST of EWM26216.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108215|gb|EWM26216.1|0.000e+0100.00Cupredoxin [Nannochloropsis gaditana][more]
gi|1094515520|emb|SEN82027.1|1.330e-724.18Multicopper oxidase with three cupredoxin domains ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4471rna4471Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications