EWM26232.1, cds4447 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|585108231|gb|EWM26232.1| (Chromatin associated protein KTI12 [Nannochloropsis gaditana]) HSP 1 Score: 694.115 bits (1790), Expect = 0.000e+0 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0
Query: 1 MSDTSTVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEARLREEDEGLHPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREKSAFFVTQDTLEKRDVELLTKSLFAAIRGEFGNDEKTWSELEKKTLKILGEKITIDP 338
MSDTSTVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEARLREEDEGLHPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREKSAFFVTQDTLEKRDVELLTKSLFAAIRGEFGNDEKTWSELEKKTLKILGEKITIDP
Sbjct: 1 MSDTSTVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEARLREEDEGLHPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREKSAFFVTQDTLEKRDVELLTKSLFAAIRGEFGNDEKTWSELEKKTLKILGEKITIDP 338
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|470518966|ref|XP_004353408.1| (chromatin associated protein kti12 protein [Acanthamoeba castellanii str. Neff] >gi|440802966|gb|ELR23880.1| chromatin associated protein kti12 protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 125.176 bits (313), Expect = 2.026e-29 Identity = 73/217 (33.64%), Postives = 121/217 (55.76%), Query Frame = 0
Query: 3 DTSTVVLVMCGLPAAGKSYWGCRLQDSASSRYPGK-ECEVQRIEFDAIE-ARLREEDEGLHPIAV------WHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEE-------VGARTLDKIWSVVERGW 204
D + +VLV+CGLP AGKS RL S+++ G+ + EV I FD ++ + + +A+ W R+R+ AL + E + + R ++ +G + SRR++++DDNMYY SMR + YL+A ++ YG V+V++ + AL++N +R RV +++I RM+AR EAP + WE +T V+ Q EE L ++W + W
Sbjct: 2 DGACMVLVLCGLPGAGKSTLARRLAQSSATHIDGELQVEVHHISFDDVDIGGVVAASSEVEEVAIDFEADRWCRSRALALLEVERRIDESRQTNNSIG-TCVSRRLIVVDDNMYYRSMRHQCYLLAKKHEVPYGQVYVEVPLAVALARNARRTGSARVPDEIIERMHARFEAPQPADHGWERHTCVVHPQREEEEPEGDAAADLDLQRLWQAIAAMW 217
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|673051847|ref|XP_008879884.1| (hypothetical protein H310_13978 [Aphanomyces invadans] >gi|574464384|gb|ETV91432.1| hypothetical protein H310_13978 [Aphanomyces invadans]) HSP 1 Score: 120.553 bits (301), Expect = 2.718e-28 Identity = 90/285 (31.58%), Postives = 138/285 (48.42%), Query Frame = 0
Query: 5 STVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEARLREEDEGLHPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVI----ERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEA--KKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREKS 283
S VVLVMCGLP AGKS Q A+ G V+ I +D I R DE P+A W R + + +S L R + + + ++DDNMYY SMR++ + +A AG+G V V S E +N RP+ V E V RM + LE P+ S+ WE++TL + E Q ++ RT++ +W + + P+S + +KE R+ R SVVH + LRR++GT + R + S++ + AK V+ + R+ +
Sbjct: 4 SAVVLVMCGLPGAGKSSL---CQALATHYESGDNVSVEWICYDDIFDSFRRHDETFDPLA-WRDMRMAVVNRIQSRL---REFADTADIVNHILHVFLVDDNMYYRSMRKRFHQLAREFRAGFGQVFVTTSNEICWQRNQTRPV--PVPESVFGRMASLLEVPDASSNAWESHTLQVALETELQRDDAVVRTMEFVWRIAQH--------PESSLHDANALEKEASRESNRRSVVHCLDGRLRRLVGTIL-------RDETSKSAMAKCLNTAKDTVLDQCRQTA 264
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|669144934|ref|XP_008608029.1| (hypothetical protein SDRG_04146 [Saprolegnia diclina VS20] >gi|530740195|gb|EQC38437.1| hypothetical protein SDRG_04146 [Saprolegnia diclina VS20]) HSP 1 Score: 112.464 bits (280), Expect = 2.928e-25 Identity = 86/273 (31.50%), Postives = 127/273 (46.52%), Query Frame = 0
Query: 8 VLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAI-EARLREEDEGLHPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGT--LSSLGRGFQVAKTEVMK 277
+LV+CGLP AGKS + L D+A Y EV I FD + AR D P W A + + E L S P R+L+LDDNMYY SMR+K + + G+G +HVD + ++N RP V + V RRM A + P S + WE ++VI+ + L +++ AP + E +KER R SV+H A+L LR+++G+ + D + S T L +L + AK V++
Sbjct: 4 ILVLCGLPGAGKSTFARALADAALRTY-----EVHYISFDDVFVARFAANDGSFAP-EQWKDAVAAIYVEVELALAAASMSGKP--------RVLLLDDNMYYRSMRKKYLQLCRQRNVGFGVIHVDTPPDLCRARNAARP--NPVPDVVFRRMQALFQPPRPSAQPWEARSIVIDLSTADSTPHALCAALAMIAEAVAAPEV--DTAQESMLEKERSRAATIASVLHRADLVLRQLVGSIL----RDAKESNTTSLPTLAKHLARAKEAVLR 254
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|1007758499|ref|XP_015818479.1| (PREDICTED: L-seryl-tRNA(Sec) kinase [Nothobranchius furzeri]) HSP 1 Score: 108.612 bits (270), Expect = 2.135e-23 Identity = 101/329 (30.70%), Postives = 150/329 (45.59%), Query Frame = 0
Query: 5 STVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEA-RLREEDEGLHPIAVWHRARSKALAQAESILHQER----------------GSST-----PVGLSKPSRRIL-ILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEA-KKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFR----EKSAFFVTQDTLEKRDVELLTKSLF 305
S + V+CGLPAAGKS CR+ S ++ + VQ E +A + E E +H +HR +A+ Q L ++R ST P GL +R +L +LDDN YY SMR +VY +A + G+ V++ +E +S+N R + V V+ M+ RL+ P+ WET TL + +V + K+ ++ P S E+ A +KE DR K SVVH A+ A RR+I AM+ A D S L SL AKT + R ++ F +D R V+ +S+F
Sbjct: 13 SACLCVLCGLPAAGKSTLACRIT-STATELGWRAAVVQYDELIPDQAFHTKAELEDMHTNWKFHR---QAVLQCIDGLVEKREMLDLPSCSLINVAPWDQSTQALLQPEGLKSDNRPLLFLLDDNFYYPSMRYEVYQLARKRSLGFCQVYLQCDLESCISRNQGR--SRPVPTSVLLEMDKRLQPPDPHKNLWETQTLTL-NTAGDVSQSDVQKVIELISSAINNPL----SPIEDNAEQKEVDRLKCATSVVHQADQACRRLISEAMMTARDDHVPSELLRSLAAQLNEAKTTFLHDLRKNVLQEVLFIQNEDIDVDRVVKRAVESVF 330
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|1173953194|gb|OQS00753.1| (hypothetical protein THRCLA_05870 [Thraustotheca clavata]) HSP 1 Score: 109.768 bits (273), Expect = 2.581e-23 Identity = 77/277 (27.80%), Postives = 133/277 (48.01%), Query Frame = 0
Query: 4 TSTVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEARLREEDEGLHPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFR 280
T+ +++++CGLP AGKS + + SS Y ++ + FD I A ++ P W + S + L QE ST + +++I +LDDNMYY SMR+K Y + + AG+ ++V+ + + N R V + V RM +APN + WET+TL I+ E ++ + ++ E+ ++ P + E +E R+ +SV+H A+LALR+++G LL S L S + K +++ +R
Sbjct: 3 TNAIIVLLCGLPGAGKSTLSKYILQAFSSSY-----DIDYLCFDTIFANTSKDSTEFVP-EQWQSSISSIYLHVQQSL-QEHIQSTTL-----TKKIFLLDDNMYYRSMRKKYYQLCRQWNAGFCQIYVNTNSVICQTHNASRVF--PVPQVVFNRMETLFQAPNPTLCTWETHTLEIDHVEN--SSQITFHMETLFEKAFKNPILDHSQSLKNE--RETSRRSNEKSVLHQADLALRQLVG--QLLKDAKQTGSNNLPSFAKHLHAKKEALLQHYR 259
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|1158850233|ref|XP_020333939.1| (LOW QUALITY PROTEIN: L-seryl-tRNA(Sec) kinase [Oncorhynchus kisutch]) HSP 1 Score: 103.219 bits (256), Expect = 3.536e-21 Identity = 92/336 (27.38%), Postives = 137/336 (40.77%), Query Frame = 0
Query: 4 TSTVVLVMCGLPAAGKSYWGCRLQDSASSR------------YPGKECEVQRIE---------------------FDAIEARLREEDEGLHPI--AVWHRARSKALAQAESI---LHQERGSSTPVGLSK----PS---------------RRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREK 282
T + V+CGLPAAGKS L + R PG V+ +E +E L+ E L PI + ARS+ L A++ + TPVG S+ P+ +++LDDN YY SMR +VY +A ++ G+ V+V VE + +N RP Q + VI M R+E PN WE N++ ++ E + ++ V+ E P + +KE DRQ SVVH A+ A RR++ AM A S + SL F +KT ++ R +
Sbjct: 13 TRICLCVLCGLPAAGKSTLAQALNSHSVQRGWRSAVISYDDLIPGDAFNVKEVEDEEDIPRSQTQTEWKCHRQAVLRCVEQFLQSPTEQLPPIIYQINRDARSRLLHAAQACGTPAGSSQACGTPVGSSQVCGTPAGSSQAYPSPSDRPPPPLVILLDDNFYYPSMRYEVYQLARKHSVGFCQVYVHCPVESCVRRNQLRP--QPLPSDVIVEMAKRMEPPNPQRNSWEQNSVTLD-SEHHFTIEYIQRLVKVISTALENPL---SPVQDNTEQKEADRQSCVSSVVHQADQACRRLVSQAMQEAREHQLPSERMRSLAADFNESKTTFLQDLRRQ 342
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|1143371083|ref|XP_019939093.1| (PREDICTED: L-seryl-tRNA(Sec) kinase [Paralichthys olivaceus]) HSP 1 Score: 99.3673 bits (246), Expect = 4.983e-20 Identity = 97/334 (29.04%), Postives = 148/334 (44.31%), Query Frame = 0
Query: 7 VVLVMCGLPAAGKSYWGCRLQDSAS------SRYPGKECEVQRIEFDAIEARLREEDEG-LHPIAVWHRARSKALAQAESILHQERGSSTPVG---------------LSKP----------SRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEA-KKERDRQKVRESVVHTAELALRRVIGTAMLLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREK----SAFFVTQDTLEKRDVELLTKS 303
+ V+CGLPAAGKS G + +A+ + P + I A R+ EE++G +H W R L E L S+ + L +P + + +LDDN YY SMR +V+ +A + G+ V++ VE +S+N +RP + V +VI M RLE PN WET ++ + + + R + + ++ P S E+ A +KE DR K SVVH A+ A RR+I AM A + S + SL +K ++ RE+ S+F TQ+ E DVE + KS
Sbjct: 13 CLCVLCGLPAAGKSSLGLTVLSTAAQLGWRATVVPYDDL----IPGQAFHTRVEEEEDGAMH--TEWKSHRQAVLQCIELFLKTPEVSAKLLSGRQINTAAWEQCVRVLRQPEAVDPSQADRAPLLFLLDDNFYYPSMRYEVFQLARKYSLGFCQVYLHCDVESCISRNQRRP--EPVPTEVILEMVKRLEPPNPQKNSWETQSISL-NTTDNLSKRDIQMVTELISSALRNPL----SPVEDNAEQKEADRLKCATSVVHQADRACRRLISEAMRTARENQVSSEHMRSLASQLNESKATFLRSLREQLLQDSSF--TQE--EDLDVERVVKS 329
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|1211235559|ref|XP_021471044.1| (L-seryl-tRNA(Sec) kinase [Oncorhynchus mykiss]) HSP 1 Score: 98.5969 bits (244), Expect = 5.450e-20 Identity = 86/294 (29.25%), Postives = 126/294 (42.86%), Query Frame = 0
Query: 4 TSTVVLVMCGLPAAGKSYWGCRLQDSASSR------------YPGKECEVQRIE---------------------FDAIEARLREEDEGLHPI--AVWHRARSKALAQAESILHQERGSS----TPVGLSKPSRR---------ILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEA-KKERDRQKVRESVVHTAELALRRVIGTAM 248
T + V+CGLPAAGKS + + R PG V+ +E +E L+ E L PI + ARS+ L A+ + GSS TP G S+ +++LDDN YY SMR +VY +A ++ G+ V+V VE + +N RP Q + VI M R+E PN WE N++ ++ E + ++ V+ E P S ++ A +KE DRQ SVVH A+ A RR++ AM
Sbjct: 3 TRICLCVLCGLPAAGKSTLAQAVNSHSVQRGWRSAVISYDDLIPGDAFNVKEVEDEEDIPRSQTQTEWKCHRQAVLRCVEQFLQSPTEQLPPIIYQINRDARSRLLHAAQ-VCGTPVGSSQVCGTPAGSSQAYPSPSDRPPPPLVILLDDNFYYPSMRYEVYQLARKHSVGFCQVYVHCPVESCVRRNQLRP--QPLPSDVIVEMAKRMEPPNPQRNPWEQNSVTLD-SEHHFTIEYIQRLVKVISTALENPL----SPVQDNAEQKEADRQSCVSSVVHQADQACRRLVSQAM 288
BLAST of EWM26232.1 vs. NCBI_GenBank
Match: gi|1049261875|ref|XP_017570799.1| (PREDICTED: L-seryl-tRNA(Sec) kinase isoform X3 [Pygocentrus nattereri]) HSP 1 Score: 97.8265 bits (242), Expect = 6.930e-20 Identity = 79/273 (28.94%), Postives = 125/273 (45.79%), Query Frame = 0
Query: 5 STVVLVMCGLPAAGKSYWGCRLQDSASSRYPGKECEVQRIEFDAIEAR----LREED---EGLHPIAVWHRARSKALAQAESILHQERGSS----------------TPV---GLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVIERQEEEVGARTLDKIWSVVERGWEAPAFIPKSCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAMLLA 251
+ + V+CGLPA+GKS L AS++ + I +D + A D +G+ P W + R L ES L + S +P S+P R ++LDDN YY SMR +VY +A + G+ V++ VE LS+N R Q V ++VI M+ R+E PN WE ++L + ++ + ++ ++ E P + FE+ + DR++ SVVH A+ A RR++ AML A
Sbjct: 4 AVCLCVLCGLPASGKS----SLVQVASAQIGKQGWGTFIISYDQLIAEEAFAFSPADSLSKGVRPQTRWKQHRQAVLTCLESFLQDPQAPSPCQTEGNVWERFSQAISPALRKSSSQPPRIAVLLDDNFYYQSMRYEVYQLARKYSTGFCQVYLHCPVEVCLSRNQDR--GQPVPDEVIVEMSKRIEPPNAQKNHWEQSSLTLT--STDITDTDIQNLFQLMFSALENPLSPFQDDFEQ---RLADRERCASSVVHQADQACRRLVSHAMLTA 265 The following BLAST results are available for this feature:
BLAST of EWM26232.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|