EWM26237.1, cds4439 (CDS) Nannochloropsis gaditana

Overview
NameEWM26237.1
Unique Namecds4439
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:622370..622517 -
Alignment locationCM002463.1:622130..622245 -
Alignment locationCM002463.1:621879..621974 -
Alignment locationCM002463.1:621153..621668 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26237.1
Productacyl- synthetase family member mitochondrial
Orig transcript idgnl|cribi|Naga_100025g40.7528.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:622370..622517 -
CM002463.1supercontigCM002463.1:622130..622245 -
CM002463.1supercontigCM002463.1:621879..621974 -
CM002463.1supercontigCM002463.1:621153..621668 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
Homology
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|585108236|gb|EWM26237.1| (acyl- synthetase family member mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MLPRQALRNVSRNLVRNKPTSTSSTTRSCTMPMARIGRSHDARLLLQQSVRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISKEGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVTADGSRGAMLSHADVLSKNAWPVVSGVLSKKLVNVAAAAAGGSH 291
            MLPRQALRNVSRNLVRNKPTSTSSTTRSCTMPMARIGRSHDARLLLQQSVRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISKEGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVTADGSRGAMLSHADVLSKNAWPVVSGVLSKKLVNVAAAAAGGSH
Sbjct:    1 MLPRQALRNVSRNLVRNKPTSTSSTTRSCTMPMARIGRSHDARLLLQQSVRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISKEGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVTADGSRGAMLSHADVLSKNAWPVVSGVLSKKLVNVAAAAAGGSH 291          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|298712921|emb|CBJ26823.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 146.362 bits (368), Expect = 1.309e-38
Identity = 83/238 (34.87%), Postives = 134/238 (56.30%), Query Frame = 0
Query:   51 RSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNI-SKEGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVTADGS-----RGAMLSHADVLSKNAWPVVSGVLSKKLVNV 282
            R +  + + +D++  EIP+KEA++Y KG  KWTR+D+K  ++ LA G L+LG K GDT+A W+PE  ++ HV Q  AA+ G+ +A +D  + S   +EK L E+ A  ++         +   L   +PEL  Y    G+PFRS K P L+  +HTG +    + + +   L   P  SPL  +   + +S PL   + ++G+     +G  LSHA+V+S  +WP ++ +L K+ V V
Sbjct:   54 RFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPE-CSEKHVAQLAAARIGMVVAEVDPKLGSAAAVEKILEESGAAVVLV-----EESVVPSLIEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAALLHFRSALL-YTPPVSPLAQVNGQIKESAPLHT-IFSEGTGGTPEKGKTLSHAEVVSLASWPTIAAILKKEYVEV 283          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|1214710398|gb|OWZ21492.1| (hypothetical protein PHMEG_0003957 [Phytophthora megakarya])

HSP 1 Score: 130.954 bits (328), Expect = 2.022e-32
Identity = 75/221 (33.94%), Postives = 134/221 (60.63%), Query Frame = 0
Query:   50 VRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISK-EGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVT----ADGSRGAMLSHADVLSK 265
            VR++++VGA+L+E    +P KEAL+  K   +W+  ++K A D LA GFLDL  + GD +A W+P + A+  +TQ  AA+AG+TLA+++  +S+ + L   L ++ A  L++ P +   + T ++Q + PELA++ +   V FR + F HL  ++ T ++ ++G+ NL  + +   PE   L A+  ++SD TPL +  +     +  + A+L+H D+L +
Sbjct:   16 VRTVSTVGAILNEAVDRLPHKEALRSVKQDVRWSFKELKAAVDELANGFLDLQFQSGDVVAVWLP-NSAENVLTQLAAARAGLTLAVIEPEVSEAKELAFILEDSRASGLVFEPKQAGRNQTQVVQGLFPELATFRERKEV-FRPKHFRHLHSVITTSWEPVEGMINLNGMMVN-SPEPYALQAVTKMLSDKTPLAVTYSKVQGQNPKKSAVLTHGDLLKR 233          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|953495740|emb|CEG42636.1| (amp-binding protein [Plasmopara halstedii])

HSP 1 Score: 130.183 bits (326), Expect = 3.050e-32
Identity = 78/236 (33.05%), Postives = 133/236 (56.36%), Query Frame = 0
Query:   36 IGRSHDARLL-LQQSVRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISK-EGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVT----ADGSRGAMLSHADVLSK 265
            +G  H  RL+ +    R+ ++VGA LDE    +P KEAL+  K   +W+  ++      LA GFLDL  + GD +A W+P +  ++ VTQ  AA+AG+TLA+++  +S+ E L   L ++ A  LI+ P     + T ++Q + PELA++     V FR + F HL  ++ TG+D ++G+ NL  + +   PE   L A+  ++++ TPL    +     +  + A+L+H D+L +
Sbjct:    2 LGLVHSKRLVRIPLCFRAASTVGATLDEAVNRLPHKEALRSIKQDVRWSFKELNTVVSELANGFLDLQFRCGDVVALWLPNNVENV-VTQLAAARAGLTLALIEPQVSEAEELAYILQDSEASGLIFEPKHAGRNQTKIVQDLFPELATFRQRKEV-FRPKNFRHLHTVITTGWDPVEGMLNLNGMMVN-SPEPHILKAVSKMLNEKTPLVFTYSQTKGQNPKKSALLTHGDLLQR 234          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|219119466|ref|XP_002180493.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407966|gb|EEC47901.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 127.102 bits (318), Expect = 3.070e-31
Identity = 93/278 (33.45%), Postives = 141/278 (50.72%), Query Frame = 0
Query:   18 KPTSTSSTTRSCTMPMARIGRSHDARLLLQQSVRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNI-------SKEGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDI--IQGVENLKHIFLP---LEPERSPLPAIQALVSDSTPLF--LPVTADG---SRGAMLSHADVLSKNAWPVVSGVLSKK 278
            KP  + +++R+ T+  AR  R+      L     S A VGA L  +T E P  + ++Y      W+   ++  +D LA G ++  L+PGD + +W+PE  ++  V QF  AK+G+ L  LD  +       +KE L K L  T A  L+        +  +L  SVIPEL  +D  LG+PF + +FPHL++ +HTGFD    +G   L+H+ +P   LE    P     A +S  TPL   L + ADG     G  LS+  V+    WP  + VL+K+
Sbjct:    4 KPLLSRASSRAATL-AARSSRALAPTTRLASRSLSTA-VGAQLQALTTEYPHLDVVRYEHKNRVWSLQHVQYYSDALAIGLMENNLQPGDVVLSWLPEHFSEQMVLQFACAKSGLVLYTLDPMLATTDREKAKEALAKALEITKANVLVSQEAGNDVNYISLGHSVIPELRIFDFSLGIPFITPRFPHLRFPIHTGFDQDDKEGWLPLRHMVVPSGNLETFVDP-----AKISKDTPLAGELLIGADGVPTGVGKTLSNEQVVKNKIWPTFAKVLAKE 274          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|301113572|ref|XP_002998556.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111857|gb|EEY69909.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 125.946 bits (315), Expect = 1.421e-30
Identity = 72/221 (32.58%), Postives = 128/221 (57.92%), Query Frame = 0
Query:   50 VRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISK-EGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVT----ADGSRGAMLSHADVLSK 265
            VR+ ++VGA LDE    +P KEAL+      +W+  ++  + D LA GFLDL  + GD +A W+P    ++ +T   AA+AG+TLA+++  +SK E L   L ++ A  L++ P +   + T ++Q++ PELA++ + + V FR + F HL  ++ T +  ++G+ NL  + +   PE   + A+   ++D TPL +  +     +  + A+L+H DVL +
Sbjct:   17 VRAASTVGATLDEAVARLPHKEALRSVTQDIRWSFKELNASVDELANGFLDLQFQRGDVVAVWLPNSVENV-LTHLAAARAGLTLAVIEPEVSKAEELAFILQDSKASGLVFEPKQAGRNQTEIVQNLFPELATFRERMEV-FRPKNFRHLHSVITTSWKPVEGMVNLNGMMVN-SPEPYAMKAVTKTLNDKTPLAVTYSKVEGQNPKKSAVLTHGDVLKR 234          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|695447376|ref|XP_009534721.1| (hypothetical protein PHYSODRAFT_355815 [Phytophthora sojae] >gi|348670038|gb|EGZ09860.1| hypothetical protein PHYSODRAFT_355815 [Phytophthora sojae])

HSP 1 Score: 124.79 bits (312), Expect = 3.608e-30
Identity = 72/217 (33.18%), Postives = 129/217 (59.45%), Query Frame = 0
Query:   54 ASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISK-EGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVT----ADGSRGAMLSHADVLSK 265
            ++VGA LDE    +P KEAL+  K   +W+  ++  A D LA+GFLDL  + GD +A W+P + A+  +TQ  AA+AG+TLA+++  +S+ E L   L ++ A  L++ P +   + T ++Q + PELA++ + + V FR ++F HL  ++ T ++ ++G+ NL  + +    E   + A+   +SD TPL +  +     +  + A+L+H D+L +
Sbjct:   21 STVGAALDEAVARLPHKEALRSVKQDVRWSFKELNAAVDELASGFLDLQFRAGDVVALWLP-NSAENVLTQLAAARAGLTLAVIEPEVSQAEELAFILHDSQAAGLVFEPKQAGRNQTEIVQGLFPELATFRERMEV-FRPKQFRHLHSVITTSWEPVEGMINLNGMMVN-NAEPYAMKAVTKTLSDKTPLAVTYSKVEGQNPKKSAVLTHGDLLKR 234          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|675200173|ref|XP_008908971.1| (hypothetical protein PPTG_13260 [Phytophthora parasitica INRA-310] >gi|567956618|gb|ETK82238.1| hypothetical protein L915_12349 [Phytophthora parasitica] >gi|567985286|gb|ETL35631.1| hypothetical protein L916_12265 [Phytophthora parasitica] >gi|568014692|gb|ETL88869.1| hypothetical protein L917_12105 [Phytophthora parasitica] >gi|568091081|gb|ETN05907.1| hypothetical protein PPTG_13260 [Phytophthora parasitica INRA-310] >gi|570322876|gb|ETO70824.1| hypothetical protein F444_12736 [Phytophthora parasitica P1976] >gi|570322896|gb|ETO70844.1| hypothetical protein F444_12724 [Phytophthora parasitica P1976] >gi|570946699|gb|ETP11956.1| hypothetical protein F441_12588 [Phytophthora parasitica CJ01A1] >gi|570979005|gb|ETP40074.1| hypothetical protein F442_12536 [Phytophthora parasitica P10297] >gi|970633909|gb|KUF79366.1| Acyl-CoA synthetase family member 2 [Phytophthora nicotianae])

HSP 1 Score: 124.02 bits (310), Expect = 7.828e-30
Identity = 70/221 (31.67%), Postives = 129/221 (58.37%), Query Frame = 0
Query:   50 VRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISK-EGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVT----ADGSRGAMLSHADVLSK 265
            VR+ ++VGA LDE    +P KEAL+      +W+  ++  + D LA GFLDL  + GD +A W+P    ++ +TQ  AA+AG+TLA+++  +S+ E L   L ++ A  L++ P +   + T ++Q++ PELA++ + + V FR + F HL  ++ T ++ ++G+ NL  + +   PE   + A+   ++D TPL +  +     +  +  +L+H D+L +
Sbjct:   17 VRAASTVGATLDEAVARLPHKEALRSVTQDIRWSFKELNASVDELANGFLDLQFQRGDVVAVWLPNSVENV-LTQLAAARAGLTLAVIEPEVSEAEELAFILQDSKASGLVFEPKQAGRNQTEIVQNLFPELATFRERMEV-FRPKNFRHLHSVITTSWEPVEGMINLNGMMVN-SPEPYAMKAVTKSLNDKTPLAVTYSKVEGQNPKKSTVLTHGDLLKR 234          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|566019310|gb|ETI42221.1| (hypothetical protein F443_12619 [Phytophthora parasitica P1569] >gi|568044939|gb|ETM42110.1| hypothetical protein L914_12189 [Phytophthora parasitica])

HSP 1 Score: 124.02 bits (310), Expect = 7.910e-30
Identity = 70/221 (31.67%), Postives = 129/221 (58.37%), Query Frame = 0
Query:   50 VRSMASVGALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWNISK-EGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDIIQGVENLKHIFLPLEPERSPLPAIQALVSDSTPLFLPVT----ADGSRGAMLSHADVLSK 265
            VR+ ++VGA LDE    +P KEAL+      +W+  ++  + D LA GFLDL  + GD +A W+P    ++ +TQ  AA+AG+TLA+++  +S+ E L   L ++ A  L++ P +   + T ++Q++ PELA++ + + V FR + F HL  ++ T ++ ++G+ NL  + +   PE   + A+   ++D TPL +  +     +  +  +L+H D+L +
Sbjct:   17 VRAASTVGATLDEAVARLPHKEALRSVTQDIRWSFKELNASVDELANGFLDLQFQRGDVVAVWLPNSVENV-LTQLAAARAGLTLAVIEPEVSEAEELAFILQDSKASGLVFEPKQAGRNQTEIVQNLFPELATFRERMEV-FRPKNFRHLHSVITTSWEPVEGMINLNGMMVN-SPEPYAMKAVTKSLNDKTPLAVTYSKVEGQNPKKSTVLTHGDLLKR 234          
BLAST of EWM26237.1 vs. NCBI_GenBank
Match: gi|223994687|ref|XP_002287027.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978342|gb|EED96668.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.783 bits (299), Expect = 3.627e-28
Identity = 91/300 (30.33%), Postives = 138/300 (46.00%), Query Frame = 0
Query:    4 RQALRNVSRNLVRNKPTSTSSTTRSCTMPMARIGRSHDARLLLQQSVRSMASV--GALLDEITFEIPLKEALQYTKGKEKWTRADIKLAADGLAAGFLDLGLKPGDTIAAWIPEDDADLHVTQFGAAKAGITLAILDWN---------ISKEGLEKTLLETNARALIYAPYRGHTDLTALLQSVIPELASYDDGLGVPFRSRKFPHLKYLVHTGFDII--QGVENLKHIFLPLEPERSPLPAIQALVSD-STPLF--LPVTADG---SRGAMLSHADVLSKNAWPVVSGVLSKKLVNVAA 284
            +Q +R+ S   VR+   +T+    S T   A + R            RS+A+V  G  L  +  + P  E ++Y     KWT   +   +D LA G +D GL+PGD + +W+P   A+ H+ QF  +KAG  L  LD N          SK  L K L  TNA  L         +   L + VIPE   +D   G+PF + ++PHL++ VHTG+ I   +G+   KH  +P     S L        D  TPL   L +  DG     G +L++ +V    AWP  + +L+++   +  
Sbjct:   22 QQQVRSASFLGVRSLAAATNGRGASPTGSTAAVTR------------RSVATVSAGDALARLATDHPHVEVIRYEHKNVKWTLKHVNYYSDALACGLVDAGLQPGDVVLSWLPLHFAEQHILQFACSKAGFLLYHLDPNPELAKSNPEQSKAALAKALELTNANVLFTQEAGDDVNYITLTEGVIPETRIFDFANGMPFFTPRYPHLRFPVHTGYSITDKEGMYAFKHFLVPSNNLDSLLRDTGCKELDGKTPLLGELVLGEDGIPTKTGKVLTNEEVFKSKAWPEFTSILNREYKEIGG 309          
The following BLAST results are available for this feature:
BLAST of EWM26237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108236|gb|EWM26237.1|0.000e+0100.00acyl- synthetase family member mitochondrial [Nann... [more]
gi|298712921|emb|CBJ26823.1|1.309e-3834.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214710398|gb|OWZ21492.1|2.022e-3233.94hypothetical protein PHMEG_0003957 [Phytophthora m... [more]
gi|953495740|emb|CEG42636.1|3.050e-3233.05amp-binding protein [Plasmopara halstedii][more]
gi|219119466|ref|XP_002180493.1|3.070e-3133.45predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|301113572|ref|XP_002998556.1|1.421e-3032.58conserved hypothetical protein [Phytophthora infes... [more]
gi|695447376|ref|XP_009534721.1|3.608e-3033.18hypothetical protein PHYSODRAFT_355815 [Phytophtho... [more]
gi|675200173|ref|XP_008908971.1|7.828e-3031.67hypothetical protein PPTG_13260 [Phytophthora para... [more]
gi|566019310|gb|ETI42221.1|7.910e-3031.67hypothetical protein F443_12619 [Phytophthora para... [more]
gi|223994687|ref|XP_002287027.1|3.627e-2830.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4450rna4450Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications