EWM26262.1, cds4413 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|585108262|gb|EWM26262.1| (dna-directed rna polymerases i and iii subunit rpac2 [Nannochloropsis gaditana]) HSP 1 Score: 333.183 bits (853), Expect = 8.341e-116 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 Query: 1 MPRTKWGNKAKRQDTLAYPHLPCKDKFQSNQIRDSTMSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDERGIH 157 MPRTKWGNKAKRQDTLAYPHLPCKDKFQSNQIRDSTMSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDERGIH Sbjct: 1 MPRTKWGNKAKRQDTLAYPHLPCKDKFQSNQIRDSTMSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDERGIH 157
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|298706157|emb|CBJ49085.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 137.887 bits (346), Expect = 2.274e-39 Identity = 63/112 (56.25%), Postives = 88/112 (78.57%), Query Frame = 0 Query: 37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148 M+VNEHRP A+ KF+ E + S TF+FGDEDHTLGN+LRHVLM KE FCGYSVPHPSEPKMN+RLQT+ +PAL++LK+GL ++ ++C++ + ++R I D E++++ Sbjct: 1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALELLKEGLRDLRDLCNILEERVEREIPDAEDEES 111
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|676397089|ref|XP_009041822.1| (hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens] >gi|323447577|gb|EGB03493.1| hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens]) HSP 1 Score: 101.293 bits (251), Expect = 2.490e-25 Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0 Query: 63 TFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICD 130 TFVF DEDHTLGN+LRHVLM +++T F GYSVPHPSEP MN+RLQT+ +PAL V+ DGL ++ ICD Sbjct: 1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTG-RPALAVMDDGLAQLSSICD 67
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|953500461|emb|CEG38170.1| (dna-directed rna polymerases i and iii subunit rpac2-like [Plasmopara halstedii]) HSP 1 Score: 101.679 bits (252), Expect = 4.706e-25 Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0 Query: 47 AEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEI 128 A KK + T E+S+T+VF DEDHTLGN+LR+VLM + FCGY++PHPSEPKM+IRLQT PA +VL+ GL ++ +I Sbjct: 4 AAKKLDVFSTTSEYSKTYVFHDEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEVLRSGLTDLRKI 85
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|919077647|ref|XP_013419952.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Lingula anatina]) HSP 1 Score: 100.138 bits (248), Expect = 1.989e-24 Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 0 Query: 58 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADS 150 DE RTFV +EDHTLGNSLR+++M E +FCGYSVPHPSE K+N+R+QT+ PA+ VL+ GL E+ +C+ T + +++++ +Q + Sbjct: 16 DETCRTFVMYNEDHTLGNSLRYIIMKNPEVQFCGYSVPHPSESKINLRIQTNG-PPAVDVLRRGLVELTAVCEHVLTTFETTVNNFKREQGSA 107
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|1176068447|ref|XP_020604120.1| (DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 [Orbicella faveolata]) HSP 1 Score: 99.7525 bits (247), Expect = 4.000e-24 Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 58 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQ 147 DE TFV +EDHTLGNSLR+++M + FCGYS+PHPSE K+N+R+QT+ T PA+ VL+ GL E+ +C+ T + A+ +Y+E Q Sbjct: 29 DETCATFVLHEEDHTLGNSLRYIIMKNPDVVFCGYSIPHPSENKINLRIQTNGT-PAIDVLRRGLSELTAMCEHMLATFETAVEEYKEAQ 117
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|1214030817|ref|XP_021568608.1| (DNA-directed RNA polymerases I and III subunit RPAC2-like [Carlito syrichta]) HSP 1 Score: 99.3673 bits (246), Expect = 5.110e-24 Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 0 Query: 57 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148 TD H TFV +EDHTLGNSLR+++M E FCGY+ HPSE K+N+R+QT PA+++ + GL+E++ +C T + ++ DY++Q+A Sbjct: 25 TDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVELFQRGLNELMNVCQHVLDTFEASVKDYKDQKA 116
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|640832691|ref|XP_008071993.1| (DNA-directed RNA polymerases I and III subunit RPAC2 [Carlito syrichta]) HSP 1 Score: 99.3673 bits (246), Expect = 6.673e-24 Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 0 Query: 57 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148 TD H TFV +EDHTLGNSLR+++M E FCGY+ HPSE K+N+R+QT PA+++ + GL+E++ +C T + ++ DY++Q+A Sbjct: 35 TDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVELFQRGLNELMNVCQHVLDTFEASVKDYKDQKA 126
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|919077626|ref|XP_013419941.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Lingula anatina]) HSP 1 Score: 97.8265 bits (242), Expect = 1.375e-23 Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 0 Query: 58 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADS 150 DE RTFV +EDHTLGNSLR+++M E +FCGYSVPHPSE K+N+R+QT+ PA+ VL+ GL E+ +C+ T + +++++ Q Sbjct: 16 DETCRTFVMHNEDHTLGNSLRYIIMKNPEVQFCGYSVPHPSESKINLRIQTNG-PPAVDVLRRGLVELTAVCEHVLTTFETTVNNFKRIQGSG 107
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|238231741|ref|NP_001154057.1| (DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss] >gi|225703254|gb|ACO07473.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss] >gi|225703690|gb|ACO07691.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss] >gi|225704120|gb|ACO07906.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]) HSP 1 Score: 97.8265 bits (242), Expect = 1.711e-23 Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0 Query: 57 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTD 152 TDE TFV +EDHTLGNSLR+++M + FCGYS+ HPSE K+N R+QT PA++ L+ GL+E+ ++C T R++S++ QQ D D Sbjct: 20 TDEGCVTFVLHEEDHTLGNSLRYMVMKSLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLRRGLNELSDVCQHVLNTFQRSVSEFRSQQEDVMD 115 The following BLAST results are available for this feature:
BLAST of EWM26262.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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