EWM26262.1, cds4413 (CDS) Nannochloropsis gaditana

Overview
NameEWM26262.1
Unique Namecds4413
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:567661..567666 -
Alignment locationCM002463.1:567379..567531 -
Alignment locationCM002463.1:566955..567269 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26262.1
Productdna-directed rna polymerases i and iii subunit rpac2
Orig transcript idgnl|cribi|Naga_100145g2.9670.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:567661..567666 -
CM002463.1supercontigCM002463.1:567379..567531 -
CM002463.1supercontigCM002463.1:566955..567269 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
Homology
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|585108262|gb|EWM26262.1| (dna-directed rna polymerases i and iii subunit rpac2 [Nannochloropsis gaditana])

HSP 1 Score: 333.183 bits (853), Expect = 8.341e-116
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MPRTKWGNKAKRQDTLAYPHLPCKDKFQSNQIRDSTMSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDERGIH 157
            MPRTKWGNKAKRQDTLAYPHLPCKDKFQSNQIRDSTMSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDERGIH
Sbjct:    1 MPRTKWGNKAKRQDTLAYPHLPCKDKFQSNQIRDSTMSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTDERGIH 157          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|298706157|emb|CBJ49085.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.887 bits (346), Expect = 2.274e-39
Identity = 63/112 (56.25%), Postives = 88/112 (78.57%), Query Frame = 0
Query:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL++LK+GL ++ ++C++ +  ++R I D E++++
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALELLKEGLRDLRDLCNILEERVEREIPDAEDEES 111          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|676397089|ref|XP_009041822.1| (hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens] >gi|323447577|gb|EGB03493.1| hypothetical protein AURANDRAFT_17769, partial [Aureococcus anophagefferens])

HSP 1 Score: 101.293 bits (251), Expect = 2.490e-25
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0
Query:   63 TFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICD 130
            TFVF DEDHTLGN+LRHVLM +++T F GYSVPHPSEP MN+RLQT+  +PAL V+ DGL ++  ICD
Sbjct:    1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTG-RPALAVMDDGLAQLSSICD 67          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|953500461|emb|CEG38170.1| (dna-directed rna polymerases i and iii subunit rpac2-like [Plasmopara halstedii])

HSP 1 Score: 101.679 bits (252), Expect = 4.706e-25
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   47 AEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEI 128
            A KK +    T E+S+T+VF DEDHTLGN+LR+VLM   +  FCGY++PHPSEPKM+IRLQT    PA +VL+ GL ++ +I
Sbjct:    4 AAKKLDVFSTTSEYSKTYVFHDEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEVLRSGLTDLRKI 85          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|919077647|ref|XP_013419952.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Lingula anatina])

HSP 1 Score: 100.138 bits (248), Expect = 1.989e-24
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   58 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADS 150
            DE  RTFV  +EDHTLGNSLR+++M   E +FCGYSVPHPSE K+N+R+QT+   PA+ VL+ GL E+  +C+    T +  +++++ +Q  +
Sbjct:   16 DETCRTFVMYNEDHTLGNSLRYIIMKNPEVQFCGYSVPHPSESKINLRIQTNG-PPAVDVLRRGLVELTAVCEHVLTTFETTVNNFKREQGSA 107          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|1176068447|ref|XP_020604120.1| (DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 [Orbicella faveolata])

HSP 1 Score: 99.7525 bits (247), Expect = 4.000e-24
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   58 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQ 147
            DE   TFV  +EDHTLGNSLR+++M   +  FCGYS+PHPSE K+N+R+QT+ T PA+ VL+ GL E+  +C+    T + A+ +Y+E Q
Sbjct:   29 DETCATFVLHEEDHTLGNSLRYIIMKNPDVVFCGYSIPHPSENKINLRIQTNGT-PAIDVLRRGLSELTAMCEHMLATFETAVEEYKEAQ 117          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|1214030817|ref|XP_021568608.1| (DNA-directed RNA polymerases I and III subunit RPAC2-like [Carlito syrichta])

HSP 1 Score: 99.3673 bits (246), Expect = 5.110e-24
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 0
Query:   57 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148
            TD H  TFV  +EDHTLGNSLR+++M   E  FCGY+  HPSE K+N+R+QT    PA+++ + GL+E++ +C     T + ++ DY++Q+A
Sbjct:   25 TDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVELFQRGLNELMNVCQHVLDTFEASVKDYKDQKA 116          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|640832691|ref|XP_008071993.1| (DNA-directed RNA polymerases I and III subunit RPAC2 [Carlito syrichta])

HSP 1 Score: 99.3673 bits (246), Expect = 6.673e-24
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 0
Query:   57 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148
            TD H  TFV  +EDHTLGNSLR+++M   E  FCGY+  HPSE K+N+R+QT    PA+++ + GL+E++ +C     T + ++ DY++Q+A
Sbjct:   35 TDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVELFQRGLNELMNVCQHVLDTFEASVKDYKDQKA 126          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|919077626|ref|XP_013419941.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Lingula anatina])

HSP 1 Score: 97.8265 bits (242), Expect = 1.375e-23
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   58 DEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADS 150
            DE  RTFV  +EDHTLGNSLR+++M   E +FCGYSVPHPSE K+N+R+QT+   PA+ VL+ GL E+  +C+    T +  +++++  Q   
Sbjct:   16 DETCRTFVMHNEDHTLGNSLRYIIMKNPEVQFCGYSVPHPSESKINLRIQTNG-PPAVDVLRRGLVELTAVCEHVLTTFETTVNNFKRIQGSG 107          
BLAST of EWM26262.1 vs. NCBI_GenBank
Match: gi|238231741|ref|NP_001154057.1| (DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss] >gi|225703254|gb|ACO07473.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss] >gi|225703690|gb|ACO07691.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss] >gi|225704120|gb|ACO07906.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss])

HSP 1 Score: 97.8265 bits (242), Expect = 1.711e-23
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   57 TDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTD 152
            TDE   TFV  +EDHTLGNSLR+++M   +  FCGYS+ HPSE K+N R+QT    PA++ L+ GL+E+ ++C     T  R++S++  QQ D  D
Sbjct:   20 TDEGCVTFVLHEEDHTLGNSLRYMVMKSLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLRRGLNELSDVCQHVLNTFQRSVSEFRSQQEDVMD 115          
The following BLAST results are available for this feature:
BLAST of EWM26262.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108262|gb|EWM26262.1|8.341e-116100.00dna-directed rna polymerases i and iii subunit rpa... [more]
gi|298706157|emb|CBJ49085.1|2.274e-3956.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|676397089|ref|XP_009041822.1|2.490e-2567.65hypothetical protein AURANDRAFT_17769, partial [Au... [more]
gi|953500461|emb|CEG38170.1|4.706e-2556.10dna-directed rna polymerases i and iii subunit rpa... [more]
gi|919077647|ref|XP_013419952.1|1.989e-2447.31PREDICTED: DNA-directed RNA polymerases I and III ... [more]
gi|1176068447|ref|XP_020604120.1|4.000e-2450.00DNA-directed RNA polymerases I and III subunit RPA... [more]
gi|1214030817|ref|XP_021568608.1|5.110e-2445.65DNA-directed RNA polymerases I and III subunit RPA... [more]
gi|640832691|ref|XP_008071993.1|6.673e-2445.65DNA-directed RNA polymerases I and III subunit RPA... [more]
gi|919077626|ref|XP_013419941.1|1.375e-2347.31PREDICTED: DNA-directed RNA polymerases I and III ... [more]
gi|238231741|ref|NP_001154057.1|1.711e-2346.88DNA-directed RNA polymerase I subunit D [Oncorhync... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4424rna4424Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications