EWM26273.1, cds4399 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|585108273|gb|EWM26273.1| (n-alpha-acetyltransferase auxiliary subunit [Nannochloropsis gaditana]) HSP 1 Score: 248.825 bits (634), Expect = 1.290e-83 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MTQGLYFMVYRETEARGPAQPHAIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
MTQGLYFMVYRETEARGPAQPHAIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH
Sbjct: 1 MTQGLYFMVYRETEARGPAQPHAIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|922862443|gb|KOO30048.1| (u6 snRNA-associated sm-like protein lsm8 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 148.288 bits (373), Expect = 3.281e-44 Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 0
Query: 25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
MAA +E D+V+ ++TNDGRNIVGVLKGFDQTTN+IL++C+ERVFS+TAGVEQV LGLYIVRGDNIAVVGE+D+EADAAL L + + LKPV+H
Sbjct: 1 MAAMIESYVDKVVQIVTNDGRNIVGVLKGFDQTTNVILEDCNERVFSSTAGVEQVALGLYIVRGDNIAVVGEIDQEADAALQLDDIMAEPLKPVVH 96
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|551551311|ref|XP_005763112.1| (hypothetical protein EMIHUDRAFT_215471 [Emiliania huxleyi CCMP1516] >gi|551578740|ref|XP_005774946.1| hypothetical protein EMIHUDRAFT_240187 [Emiliania huxleyi CCMP1516] >gi|485612368|gb|EOD10683.1| hypothetical protein EMIHUDRAFT_215471 [Emiliania huxleyi CCMP1516] >gi|485626854|gb|EOD22517.1| hypothetical protein EMIHUDRAFT_240187 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 144.05 bits (362), Expect = 1.621e-42 Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 0
Query: 25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQ-----VPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
M+A LE L D+V+ VITNDGRNIVG+LKGFDQTTN+IL ECHERVFSTTAGVEQ V LGLYIVRGDNIA+VGE+DEE DA +DL+ LK + LK V+H
Sbjct: 1 MSAMLEPLVDKVVQVITNDGRNIVGLLKGFDQTTNVILDECHERVFSTTAGVEQAAAGPVMLGLYIVRGDNIALVGEVDEEIDAEIDLAMLKAEPLKAVVH 101
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|565485869|ref|XP_006300574.1| (hypothetical protein CARUB_v10021206mg [Capsella rubella] >gi|482569284|gb|EOA33472.1| hypothetical protein CARUB_v10021206mg [Capsella rubella]) HSP 1 Score: 144.05 bits (362), Expect = 1.707e-42 Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 0
Query: 26 AATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
A LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERVFST GV+QV LGLYI+RGDNI V+GE+DEE DA+LDLS L+ LKPV+H
Sbjct: 4 ATGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQVVLGLYIIRGDNIGVIGELDEELDASLDLSKLRAQPLKPVVH 98
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|1072915631|ref|XP_018468348.1| (PREDICTED: sm-like protein LSM8 [Raphanus sativus] >gi|1072915633|ref|XP_018468349.1| PREDICTED: sm-like protein LSM8 [Raphanus sativus] >gi|1072915635|ref|XP_018468352.1| PREDICTED: sm-like protein LSM8 [Raphanus sativus]) HSP 1 Score: 142.51 bits (358), Expect = 5.890e-42 Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 0
Query: 25 MAAT--LEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
MAAT LE L D++I VITNDGRNIVGVL+GFDQ TNIIL E HERVFST GV+Q+ LGLYI+RGDNI V+GE+DEE DA+LDLS L+ LKPV+H
Sbjct: 1 MAATTGLESLVDQIISVITNDGRNIVGVLRGFDQATNIILDESHERVFSTKVGVQQLVLGLYIIRGDNIGVIGELDEELDASLDLSKLRAHPLKPVVH 98
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|848903211|ref|XP_012851425.1| (PREDICTED: sm-like protein LSM8 [Erythranthe guttata]) HSP 1 Score: 142.124 bits (357), Expect = 8.093e-42 Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 0
Query: 27 ATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
A LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERV+ST GV+Q+ LGLYI+RGDNI++VGE+DEE DA+LDLS+L+ LKPVIH
Sbjct: 5 AGLENLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDASLDLSALRAHPLKPVIH 98
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|604307069|gb|EYU25647.1| (hypothetical protein MIMGU_mgv1a016315mg [Erythranthe guttata]) HSP 1 Score: 142.895 bits (359), Expect = 1.113e-41 Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 0
Query: 27 ATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
A LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERV+ST GV+Q+ LGLYI+RGDNI++VGE+DEE DA+LDLS+L+ LKPVIH
Sbjct: 33 AGLENLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDASLDLSALRAHPLKPVIH 126
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|567125758|ref|XP_006391537.1| (hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >gi|567125762|ref|XP_006391538.1| hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >gi|557087971|gb|ESQ28823.1| hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >gi|557087972|gb|ESQ28824.1| hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum]) HSP 1 Score: 141.354 bits (355), Expect = 1.705e-41 Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 0
Query: 25 MAAT--LEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
MAAT LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERVFST GV+Q+ LGLYI+RGDNI V+GE+DEE DA+LD S L+ LKPV+H
Sbjct: 1 MAATTGLESLVDQMISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|901797147|gb|KMZ59617.1| (N-alpha-acetyltransferase 38, NatC auxiliary subunit [Zostera marina]) HSP 1 Score: 141.354 bits (355), Expect = 1.841e-41 Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 0
Query: 26 AATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
A+TLE L D++I VITNDGRNIVG+LKGFDQ TNIIL E HERV+ST GV+Q+ LGLYI+RGDNI+VVGE+DE+ D+ LDLS++K LKPVIH
Sbjct: 4 ASTLESLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVYSTREGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSTVKAHPLKPVIH 98
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|1149751751|ref|XP_020198252.1| (sm-like protein LSM8 [Aegilops tauschii subsp. tauschii] >gi|474091689|gb|EMS54922.1| hypothetical protein TRIUR3_15166 [Triticum urartu] >gi|475582700|gb|EMT19214.1| hypothetical protein F775_30197 [Aegilops tauschii] >gi|998151033|gb|AMK08982.1| SMP [Triticum monococcum subsp. monococcum] >gi|998151041|gb|AMK08986.1| SMP [Triticum monococcum subsp. monococcum]) HSP 1 Score: 141.354 bits (355), Expect = 1.982e-41 Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 0
Query: 23 AIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
A + TLE L D+VI VITNDGRNIVG L+GFDQ TNIIL E HERV+ST GV+Q+ LGLYI+RGDNI VVGE+DEE DAALD+S L+ LKPVIH
Sbjct: 2 ASVGPTLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 99 The following BLAST results are available for this feature:
BLAST of EWM26273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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