EWM26273.1, cds4399 (CDS) Nannochloropsis gaditana

Overview
NameEWM26273.1
Unique Namecds4399
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:536016..536118 +
Alignment locationCM002463.1:536187..536446 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26273.1
Productn-alpha-acetyltransferase auxiliary subunit
Orig transcript idgnl|cribi|Naga_100145g18.9681.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:536016..536118 +
CM002463.1supercontigCM002463.1:536187..536446 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|585108273|gb|EWM26273.1| (n-alpha-acetyltransferase auxiliary subunit [Nannochloropsis gaditana])

HSP 1 Score: 248.825 bits (634), Expect = 1.290e-83
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MTQGLYFMVYRETEARGPAQPHAIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            MTQGLYFMVYRETEARGPAQPHAIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH
Sbjct:    1 MTQGLYFMVYRETEARGPAQPHAIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|922862443|gb|KOO30048.1| (u6 snRNA-associated sm-like protein lsm8 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 148.288 bits (373), Expect = 3.281e-44
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 0
Query:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            MAA +E   D+V+ ++TNDGRNIVGVLKGFDQTTN+IL++C+ERVFS+TAGVEQV LGLYIVRGDNIAVVGE+D+EADAAL L  +  + LKPV+H
Sbjct:    1 MAAMIESYVDKVVQIVTNDGRNIVGVLKGFDQTTNVILEDCNERVFSSTAGVEQVALGLYIVRGDNIAVVGEIDQEADAALQLDDIMAEPLKPVVH 96          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|551551311|ref|XP_005763112.1| (hypothetical protein EMIHUDRAFT_215471 [Emiliania huxleyi CCMP1516] >gi|551578740|ref|XP_005774946.1| hypothetical protein EMIHUDRAFT_240187 [Emiliania huxleyi CCMP1516] >gi|485612368|gb|EOD10683.1| hypothetical protein EMIHUDRAFT_215471 [Emiliania huxleyi CCMP1516] >gi|485626854|gb|EOD22517.1| hypothetical protein EMIHUDRAFT_240187 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.05 bits (362), Expect = 1.621e-42
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 0
Query:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQ-----VPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            M+A LE L D+V+ VITNDGRNIVG+LKGFDQTTN+IL ECHERVFSTTAGVEQ     V LGLYIVRGDNIA+VGE+DEE DA +DL+ LK + LK V+H
Sbjct:    1 MSAMLEPLVDKVVQVITNDGRNIVGLLKGFDQTTNVILDECHERVFSTTAGVEQAAAGPVMLGLYIVRGDNIALVGEVDEEIDAEIDLAMLKAEPLKAVVH 101          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|565485869|ref|XP_006300574.1| (hypothetical protein CARUB_v10021206mg [Capsella rubella] >gi|482569284|gb|EOA33472.1| hypothetical protein CARUB_v10021206mg [Capsella rubella])

HSP 1 Score: 144.05 bits (362), Expect = 1.707e-42
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 0
Query:   26 AATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            A  LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERVFST  GV+QV LGLYI+RGDNI V+GE+DEE DA+LDLS L+   LKPV+H
Sbjct:    4 ATGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQVVLGLYIIRGDNIGVIGELDEELDASLDLSKLRAQPLKPVVH 98          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|1072915631|ref|XP_018468348.1| (PREDICTED: sm-like protein LSM8 [Raphanus sativus] >gi|1072915633|ref|XP_018468349.1| PREDICTED: sm-like protein LSM8 [Raphanus sativus] >gi|1072915635|ref|XP_018468352.1| PREDICTED: sm-like protein LSM8 [Raphanus sativus])

HSP 1 Score: 142.51 bits (358), Expect = 5.890e-42
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 0
Query:   25 MAAT--LEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            MAAT  LE L D++I VITNDGRNIVGVL+GFDQ TNIIL E HERVFST  GV+Q+ LGLYI+RGDNI V+GE+DEE DA+LDLS L+   LKPV+H
Sbjct:    1 MAATTGLESLVDQIISVITNDGRNIVGVLRGFDQATNIILDESHERVFSTKVGVQQLVLGLYIIRGDNIGVIGELDEELDASLDLSKLRAHPLKPVVH 98          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|848903211|ref|XP_012851425.1| (PREDICTED: sm-like protein LSM8 [Erythranthe guttata])

HSP 1 Score: 142.124 bits (357), Expect = 8.093e-42
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 0
Query:   27 ATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            A LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI++VGE+DEE DA+LDLS+L+   LKPVIH
Sbjct:    5 AGLENLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDASLDLSALRAHPLKPVIH 98          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|604307069|gb|EYU25647.1| (hypothetical protein MIMGU_mgv1a016315mg [Erythranthe guttata])

HSP 1 Score: 142.895 bits (359), Expect = 1.113e-41
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 0
Query:   27 ATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            A LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI++VGE+DEE DA+LDLS+L+   LKPVIH
Sbjct:   33 AGLENLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDASLDLSALRAHPLKPVIH 126          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|567125758|ref|XP_006391537.1| (hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >gi|567125762|ref|XP_006391538.1| hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >gi|557087971|gb|ESQ28823.1| hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum] >gi|557087972|gb|ESQ28824.1| hypothetical protein EUTSA_v10019364mg [Eutrema salsugineum])

HSP 1 Score: 141.354 bits (355), Expect = 1.705e-41
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 0
Query:   25 MAAT--LEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            MAAT  LE L D++I VITNDGRNIVGVLKGFDQ TNIIL E HERVFST  GV+Q+ LGLYI+RGDNI V+GE+DEE DA+LD S L+   LKPV+H
Sbjct:    1 MAATTGLESLVDQMISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|901797147|gb|KMZ59617.1| (N-alpha-acetyltransferase 38, NatC auxiliary subunit [Zostera marina])

HSP 1 Score: 141.354 bits (355), Expect = 1.841e-41
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 0
Query:   26 AATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            A+TLE L D++I VITNDGRNIVG+LKGFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI+VVGE+DE+ D+ LDLS++K   LKPVIH
Sbjct:    4 ASTLESLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVYSTREGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSTVKAHPLKPVIH 98          
BLAST of EWM26273.1 vs. NCBI_GenBank
Match: gi|1149751751|ref|XP_020198252.1| (sm-like protein LSM8 [Aegilops tauschii subsp. tauschii] >gi|474091689|gb|EMS54922.1| hypothetical protein TRIUR3_15166 [Triticum urartu] >gi|475582700|gb|EMT19214.1| hypothetical protein F775_30197 [Aegilops tauschii] >gi|998151033|gb|AMK08982.1| SMP [Triticum monococcum subsp. monococcum] >gi|998151041|gb|AMK08986.1| SMP [Triticum monococcum subsp. monococcum])

HSP 1 Score: 141.354 bits (355), Expect = 1.982e-41
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 0
Query:   23 AIMAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
            A +  TLE L D+VI VITNDGRNIVG L+GFDQ TNIIL E HERV+ST  GV+Q+ LGLYI+RGDNI VVGE+DEE DAALD+S L+   LKPVIH
Sbjct:    2 ASVGPTLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 99          
The following BLAST results are available for this feature:
BLAST of EWM26273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108273|gb|EWM26273.1|1.290e-83100.00n-alpha-acetyltransferase auxiliary subunit [Nanno... [more]
gi|922862443|gb|KOO30048.1|3.281e-4471.88u6 snRNA-associated sm-like protein lsm8 [Chrysoch... [more]
gi|551551311|ref|XP_005763112.1|1.621e-4272.28hypothetical protein EMIHUDRAFT_215471 [Emiliania ... [more]
gi|565485869|ref|XP_006300574.1|1.707e-4272.63hypothetical protein CARUB_v10021206mg [Capsella r... [more]
gi|1072915631|ref|XP_018468348.1|5.890e-4271.43PREDICTED: sm-like protein LSM8 [Raphanus sativus]... [more]
gi|848903211|ref|XP_012851425.1|8.093e-4272.34PREDICTED: sm-like protein LSM8 [Erythranthe gutta... [more]
gi|604307069|gb|EYU25647.1|1.113e-4172.34hypothetical protein MIMGU_mgv1a016315mg [Erythran... [more]
gi|567125758|ref|XP_006391537.1|1.705e-4171.43hypothetical protein EUTSA_v10019364mg [Eutrema sa... [more]
gi|901797147|gb|KMZ59617.1|1.841e-4170.53N-alpha-acetyltransferase 38, NatC auxiliary subun... [more]
gi|1149751751|ref|XP_020198252.1|1.982e-4170.41sm-like protein LSM8 [Aegilops tauschii subsp. tau... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4409rna4409Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications