EWM26309.1, cds4368 (CDS) Nannochloropsis gaditana

Overview
NameEWM26309.1
Unique Namecds4368
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:426631..427553 -
Alignment locationCM002463.1:424982..426536 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26309.1
Producttranscriptional activator myb
Orig transcript idgnl|cribi|Naga_100093g10.5106.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:426631..427553 -
CM002463.1supercontigCM002463.1:424982..426536 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|585108315|gb|EWM26309.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 1681.77 bits (4354), Expect = 0.000e+0
Identity = 825/825 (100.00%), Postives = 825/825 (100.00%), Query Frame = 0
Query:    1 MSSFDISAPDHIEASSALGPPEQPIDIKIQVKKESDAMAAGHPASCEGSKTREATLPLGTLGLLPASSAKNPPIVTRREEHHSKSSLSQGSYSLSASRSAPQHSSSKVGIHVNSQRPLRPDGKETKLTPEPDTGEKSGKRGIIAVEERRESPLKEPSSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKAAGRAATKKRDLGNQESWKAAASYPSVRDPPAEKERRGHGGDAVAKRLNSCAGHVAYKGDKGGRAMSSKGRQEVDASGVVKDSTRCLARAESAEGNMARTTAGTSIGPPPLPVSLSPASQPALSTPTDTSGSGCGSRGAFEHSCLEDWADLDGLEQGALEDFLKSAEGDSYFLGPEGPCAGGESSRERMQREEGEDGSLAASFMSVSLERTRSRAKNPSTAAAPHARHSDHVSGRPPTQPSQPKNERLAHNLRPLKQEENTPQHHHPLYPQHHHYLQAQHKELHVSVRTPAPAWEPSLLSYPPRRLHAMVRSDGPNQPYDISDDPGSSLGITQHSPPGYPSFPSHHFPALHARPPSAHGGTGTPFSSNAVYGWKGGYESERATPTPSCFHATTGVDQRAKDGIPLLLPPSHPSKSSYKPAFPGPAVSLQEDAPGTGFPHISSPNNESQQSLQEDHLLEDGFGGKAQGGRRDEKKGVPEPGCLESQMQPPSFVLDPNESFHIGDDFLV 825
            MSSFDISAPDHIEASSALGPPEQPIDIKIQVKKESDAMAAGHPASCEGSKTREATLPLGTLGLLPASSAKNPPIVTRREEHHSKSSLSQGSYSLSASRSAPQHSSSKVGIHVNSQRPLRPDGKETKLTPEPDTGEKSGKRGIIAVEERRESPLKEPSSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKAAGRAATKKRDLGNQESWKAAASYPSVRDPPAEKERRGHGGDAVAKRLNSCAGHVAYKGDKGGRAMSSKGRQEVDASGVVKDSTRCLARAESAEGNMARTTAGTSIGPPPLPVSLSPASQPALSTPTDTSGSGCGSRGAFEHSCLEDWADLDGLEQGALEDFLKSAEGDSYFLGPEGPCAGGESSRERMQREEGEDGSLAASFMSVSLERTRSRAKNPSTAAAPHARHSDHVSGRPPTQPSQPKNERLAHNLRPLKQEENTPQHHHPLYPQHHHYLQAQHKELHVSVRTPAPAWEPSLLSYPPRRLHAMVRSDGPNQPYDISDDPGSSLGITQHSPPGYPSFPSHHFPALHARPPSAHGGTGTPFSSNAVYGWKGGYESERATPTPSCFHATTGVDQRAKDGIPLLLPPSHPSKSSYKPAFPGPAVSLQEDAPGTGFPHISSPNNESQQSLQEDHLLEDGFGGKAQGGRRDEKKGVPEPGCLESQMQPPSFVLDPNESFHIGDDFLV
Sbjct:    1 MSSFDISAPDHIEASSALGPPEQPIDIKIQVKKESDAMAAGHPASCEGSKTREATLPLGTLGLLPASSAKNPPIVTRREEHHSKSSLSQGSYSLSASRSAPQHSSSKVGIHVNSQRPLRPDGKETKLTPEPDTGEKSGKRGIIAVEERRESPLKEPSSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKAAGRAATKKRDLGNQESWKAAASYPSVRDPPAEKERRGHGGDAVAKRLNSCAGHVAYKGDKGGRAMSSKGRQEVDASGVVKDSTRCLARAESAEGNMARTTAGTSIGPPPLPVSLSPASQPALSTPTDTSGSGCGSRGAFEHSCLEDWADLDGLEQGALEDFLKSAEGDSYFLGPEGPCAGGESSRERMQREEGEDGSLAASFMSVSLERTRSRAKNPSTAAAPHARHSDHVSGRPPTQPSQPKNERLAHNLRPLKQEENTPQHHHPLYPQHHHYLQAQHKELHVSVRTPAPAWEPSLLSYPPRRLHAMVRSDGPNQPYDISDDPGSSLGITQHSPPGYPSFPSHHFPALHARPPSAHGGTGTPFSSNAVYGWKGGYESERATPTPSCFHATTGVDQRAKDGIPLLLPPSHPSKSSYKPAFPGPAVSLQEDAPGTGFPHISSPNNESQQSLQEDHLLEDGFGGKAQGGRRDEKKGVPEPGCLESQMQPPSFVLDPNESFHIGDDFLV 825          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|585100989|gb|EWM20993.1| (myb-related 3r-1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 209.534 bits (532), Expect = 1.171e-53
Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 0
Query:  111 HVNSQRPLRPDGKETKLTPEPDTGEKSGKRGIIAVEERRESPLKEPSSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRR 316
            H+++  P+  +G++           KS +  +   E+ R   + E  + PG    W+ E+DA LR  VAS+GP+ WK+IS E  +G  +D QCL+RW KVL+PGLVKGPW  EED +IL+C++ G  KW+ IA+ IPGRLGKQCRERW N+LDP++ K  W+ EED+ L   QA+ GNAW KIA  LPGRSEN+VKNRWNS+   R
Sbjct:   90 HLSTFLPVESNGRK----------RKSARNEVKEGEDPRLVSVDEDEADPGPS--WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMAR 283          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|676387185|ref|XP_009036871.1| (hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens] >gi|323452494|gb|EGB08368.1| hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens])

HSP 1 Score: 188.348 bits (477), Expect = 3.978e-52
Identity = 91/155 (58.71%), Postives = 117/155 (75.48%), Query Frame = 0
Query:  165 RWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQE---GNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRR 316
            +W++EED  LR  V + G + WK+++   L   RSDVQCLHRW KVL+PGL KGPWTA+ED+I+   V     GN+KW+ IA  +PGR+GKQCRERW+N+LDP +KKG+WT EED +L E Q   GN W++IA+ LPGR+ENAVKNRWNSS R+R
Sbjct:    1 KWTEEEDNRLREIVETFGAKNWKRLA-MLLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|298708729|emb|CBJ30691.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 204.527 bits (519), Expect = 1.897e-51
Identity = 94/163 (57.67%), Postives = 122/163 (74.85%), Query Frame = 0
Query:  157 SSGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEG---NLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRR 316
            S GP GGK W+KEED  LR  V   G + W+ ++++ L   RSDVQCLHRW KVL+PGL KGPWT EED I+  CV+      +KW+ +A  +PGR+GKQCRERW+N+LDP++KKGEW+ EEDR++  AQA  GN W +IA+ LPGR+ENAVKNR+NSS R++
Sbjct:   89 SKGPKGGK-WTKEEDTRLREIVEHHGARNWRMVAEQ-LGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKK 249          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|545363885|ref|XP_005647035.1| (Homeodomain-like protein, partial [Coccomyxa subellipsoidea C-169] >gi|384249008|gb|EIE22491.1| Homeodomain-like protein, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 186.808 bits (473), Expect = 2.233e-51
Identity = 90/160 (56.25%), Postives = 119/160 (74.38%), Query Frame = 0
Query:  158 SGPGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQE-GNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRR 316
            S  GG   W+ EED +LR AV+  G + WK+I++ F +  R+DVQCLHRWQKVL P LVKGPWT EED  I+  V   G  +W+ IA  +PGR+GKQCRERW+N+LDP +K+G+WT+EED +L E  A++GN W KIA+ LPGR++NA+KN WNS+ RR+
Sbjct:    9 SAVGG---WTAEEDEVLRRAVSYYGAKNWKKIAEHFED--RTDVQCLHRWQKVLNPELVKGPWTPEEDLKIIELVTRLGAKRWSLIAKDLPGRIGKQCRERWHNHLDPTIKRGDWTKEEDSMLVEKHAEYGNQWAKIAQFLPGRTDNAIKNHWNSTMRRK 163          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|829198436|ref|XP_001027254.2| (Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210] >gi|586724517|gb|EAS07012.2| Myb-like DNA-binding domain protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 204.527 bits (519), Expect = 3.101e-51
Identity = 98/198 (49.49%), Postives = 134/198 (67.68%), Query Frame = 0
Query:  154 KEPSSGPGGGKRW-SKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCV-QEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKAAGRAAT----KKRDLGNQESWKAAASYPSV 345
            K  +S     KRW +KEED +L+  V   G + WK+I+  F E  RSDVQCLHRWQKVL P LVKGPWT EED+I+ + V ++G   W++IA  +PGR+GKQCRERW+N+L+P +KK  WTEEED+ + EA  + GN W  IA+ LPGR++NA+KN WNS+ +R+ K   R       KK++L  +E  +  ++ PSV
Sbjct:  401 KNSNSPSNTTKRWWTKEEDELLKNLVKDHGAKNWKKIAGYFKE--RSDVQCLHRWQKVLNPSLVKGPWTKEEDEIVTKLVLEQGPKNWSSIAKHLPGRIGKQCRERWHNHLNPYIKKDRWTEEEDQAIIEAHKRLGNRWALIAKYLPGRTDNAIKNHWNSTIKRKLKMQKREEDLEPPKKKNLNIKEIEEELSNMPSV 596          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|585103684|gb|EWM22952.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 196.052 bits (497), Expect = 3.615e-51
Identity = 92/160 (57.50%), Postives = 116/160 (72.50%), Query Frame = 0
Query:  160 PGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKA 319
            PGG  +W+ +ED  LR  V + G   W  IS +FL  +RS +QC HRWQKVL+PGLVKGPWT EED II+ C Q G  +W  IA  + GRLGKQCR+RW N+LDPA+ K  WTEEED+VLAE +  +GNAW KIA+ LPGR EN++KNRW S+ R +E++
Sbjct:   61 PGG--KWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERS 218          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|676390841|ref|XP_009038698.1| (hypothetical protein AURANDRAFT_29109, partial [Aureococcus anophagefferens] >gi|323450640|gb|EGB06520.1| hypothetical protein AURANDRAFT_29109, partial [Aureococcus anophagefferens])

HSP 1 Score: 186.037 bits (471), Expect = 5.525e-51
Identity = 93/154 (60.39%), Postives = 114/154 (74.03%), Query Frame = 0
Query:  164 KRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGK-RSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEG-NLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRR 315
            +RW+K ED  LRA V + G   W  + + +L G  RS  QC HRW+ VL  GLVKG +T +ED+II+R ++EG  L W  IA  IPGR+GKQCRERW N+LDP+LKKG WT EED ++AEAQ +WGNAWTKIA  LPGR+ENAVKNRWNS+ RR
Sbjct:   19 RRWTKREDEKLRAGVKAVGSGDWAAVCNTYLGGHGRSPEQCRHRWEHVLSEGLVKGAFTEDEDEIIVRAMKEGRQLTWMQIAARIPGRIGKQCRERWTNHLDPSLKKGGWTPEEDSIMAEAQTRWGNAWTKIAELLPGRAENAVKNRWNSAFRR 172          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|585103683|gb|EWM22951.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 196.823 bits (499), Expect = 1.445e-50
Identity = 92/160 (57.50%), Postives = 116/160 (72.50%), Query Frame = 0
Query:  160 PGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKA 319
            PGG  +W+ +ED  LR  V + G   W  IS +FL  +RS +QC HRWQKVL+PGLVKGPWT EED II+ C Q G  +W  IA  + GRLGKQCR+RW N+LDPA+ K  WTEEED+VLAE +  +GNAW KIA+ LPGR EN++KNRW S+ R +E++
Sbjct:  161 PGG--KWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERS 318          
BLAST of EWM26309.1 vs. NCBI_GenBank
Match: gi|1072231635|gb|OEU16367.1| (ternary protein-Dna Complex1, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 184.111 bits (466), Expect = 1.521e-50
Identity = 87/152 (57.24%), Postives = 117/152 (76.97%), Query Frame = 0
Query:  165 RWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQ-EGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRR 315
            +W++EED +LR AVA+ G + WK+I+   L G R+DVQCLHRWQKVL+PGL+KGPWT EED  ++  V+  GN KW+ IA  + GRLGKQCRERWYN+L+P + KGEWT +ED+ L +A  + GN W +IA+ L GR++NA+KNRWNS+ +R
Sbjct:    7 KWTEEEDELLREAVANYGGKSWKKIAGR-LSG-RTDVQCLHRWQKVLKPGLIKGPWTQEEDSKVIELVKMHGNKKWSFIARQLKGRLGKQCRERWYNHLNPDINKGEWTNDEDKALIQAHDELGNRWAEIAKRLSGRTDNAIKNRWNSTLKR 156          
The following BLAST results are available for this feature:
BLAST of EWM26309.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108315|gb|EWM26309.1|0.000e+0100.00transcriptional activator myb [Nannochloropsis gad... [more]
gi|585100989|gb|EWM20993.1|1.171e-5349.51myb-related 3r-1-like protein [Nannochloropsis gad... [more]
gi|676387185|ref|XP_009036871.1|3.978e-5258.71hypothetical protein AURANDRAFT_7821, partial [Aur... [more]
gi|298708729|emb|CBJ30691.1|1.897e-5157.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|545363885|ref|XP_005647035.1|2.233e-5156.25Homeodomain-like protein, partial [Coccomyxa subel... [more]
gi|829198436|ref|XP_001027254.2|3.101e-5149.49Myb-like DNA-binding domain protein [Tetrahymena t... [more]
gi|585103684|gb|EWM22952.1|3.615e-5157.50myb-like protein [Nannochloropsis gaditana][more]
gi|676390841|ref|XP_009038698.1|5.525e-5160.39hypothetical protein AURANDRAFT_29109, partial [Au... [more]
gi|585103683|gb|EWM22951.1|1.445e-5057.50myb-like protein [Nannochloropsis gaditana][more]
gi|1072231635|gb|OEU16367.1|1.521e-5057.24ternary protein-Dna Complex1, partial [Fragilariop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4378rna4378Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications