EWM26307.1, cds4363 (CDS) Nannochloropsis gaditana

Overview
NameEWM26307.1
Unique Namecds4363
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:414096..414263 -
Alignment locationCM002463.1:410239..413760 -

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Properties
Property NameValue
Protein idEWM26307.1
ProductZinc finger, CCCH-type
Orig transcript idgnl|cribi|Naga_100093g16.5104.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:414096..414263 -
CM002463.1supercontigCM002463.1:410239..413760 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of EWM26307.1 vs. NCBI_GenBank
Match: gi|585108313|gb|EWM26307.1| (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 2508.02 bits (6499), Expect = 0.000e+0
Identity = 1229/1229 (100.00%), Postives = 1229/1229 (100.00%), Query Frame = 0 
Query:    1 MNEKEALALLDLPESPHPDEFSVRAAFKALALPYLALGEGDAQRHTRLWQLCRAYEVLMHINEDIEGVEGDEDLNSEEAEEEEEAYWFDEDGEVDELLRLHWQHCRRRRRDGQQASGDAEAQQPLPAAPALSAASTSLLPQPPSLPCMTSTGKCVVWVGGRPYFLAPDAGWGGRQGVASQAQAVGHKAVADDDEVRARRALAADDRQKRREELIAEEKARRARLQEKDARRRLKAEQRRREKEENGEAKLVTFEDAIQAARQGRFAHFLAMVETVRRKAAGNGWHGARTWQYGSTGGGADNSLHFYHDFLRSRDARRETLLHACVTPWRRLEPGAGGRRRQRPIFPRPGLEGGGLQLSLEAPEGGVAMEETAWQALLHELSESHRGRLHIAAFLLDTDATTGFALFDMSHDLDDQGRAVVHAIAEACDSLFLQLLLRHKARYPRFALDLNQLSALHLTPLHYAAVSAGIETVALLLSHGASPLMRVGGGVGGGVEEGGKGETPLEMVQSCLEGGAIEDDEEEEIIVTRVAGGHWGEGVETGREGGEASYGLESRRVRLQQVAAHLTAAAAARQLTLWQKKEEARERRRQRYSNATEAARRRREERIMNEHGQCGTETPKGPQIEGEVQRDSEAKMSHSSEEMGGKGEHGNSCPVESAATTTASAPSIPCTSVIGSTPNPTAVGAAGLTRPASTYCEPTTLEEPSTESQPPPSQAPVQESSTDAPASNILFLPTASCSLDPPALQDAKPTKRADPAKPTPPAIAEPVKALFKQAALEEKRRKKFEKFCAKIERKENQAMASEEAAVWASLRVEAAAKVKAAEKLLSEAQDAEKACISREARLKAALATEEVREEESCGRRLDDQGCTREGPEGQEATAHVSPQEMDGNAGTSSSIPAVLSATEVSSLSSQSSSILSSPSVPGLGSDKVLVFPQKGEHRDAPPLHSQAHSAVEKQRRGEDSASEAETMSRMAKTSSCQHLRSRQQEHPRQQTEPFGQQQQLRGDLGRTTSRDDVLETESTSSSISSKSDTHHQQHQQVLFHPHHNVATAKPMRSGPASAKPPQLHSDRRAKTLEGSNSVAKGVPLLQPGQVQKQVDHSAMMPSVKQGEEKPQSIAAPAALASPTSQCSQDTKTTIASGASYSDSGAHSITAIPAVKSAIKDTSVALPTTNSNLPVPPPTAVGNGRKYTAEKGSRNFVHSRKCRFFGKGAGCDGGSACLFRHDSGEKTNQKR 1229
            MNEKEALALLDLPESPHPDEFSVRAAFKALALPYLALGEGDAQRHTRLWQLCRAYEVLMHINEDIEGVEGDEDLNSEEAEEEEEAYWFDEDGEVDELLRLHWQHCRRRRRDGQQASGDAEAQQPLPAAPALSAASTSLLPQPPSLPCMTSTGKCVVWVGGRPYFLAPDAGWGGRQGVASQAQAVGHKAVADDDEVRARRALAADDRQKRREELIAEEKARRARLQEKDARRRLKAEQRRREKEENGEAKLVTFEDAIQAARQGRFAHFLAMVETVRRKAAGNGWHGARTWQYGSTGGGADNSLHFYHDFLRSRDARRETLLHACVTPWRRLEPGAGGRRRQRPIFPRPGLEGGGLQLSLEAPEGGVAMEETAWQALLHELSESHRGRLHIAAFLLDTDATTGFALFDMSHDLDDQGRAVVHAIAEACDSLFLQLLLRHKARYPRFALDLNQLSALHLTPLHYAAVSAGIETVALLLSHGASPLMRVGGGVGGGVEEGGKGETPLEMVQSCLEGGAIEDDEEEEIIVTRVAGGHWGEGVETGREGGEASYGLESRRVRLQQVAAHLTAAAAARQLTLWQKKEEARERRRQRYSNATEAARRRREERIMNEHGQCGTETPKGPQIEGEVQRDSEAKMSHSSEEMGGKGEHGNSCPVESAATTTASAPSIPCTSVIGSTPNPTAVGAAGLTRPASTYCEPTTLEEPSTESQPPPSQAPVQESSTDAPASNILFLPTASCSLDPPALQDAKPTKRADPAKPTPPAIAEPVKALFKQAALEEKRRKKFEKFCAKIERKENQAMASEEAAVWASLRVEAAAKVKAAEKLLSEAQDAEKACISREARLKAALATEEVREEESCGRRLDDQGCTREGPEGQEATAHVSPQEMDGNAGTSSSIPAVLSATEVSSLSSQSSSILSSPSVPGLGSDKVLVFPQKGEHRDAPPLHSQAHSAVEKQRRGEDSASEAETMSRMAKTSSCQHLRSRQQEHPRQQTEPFGQQQQLRGDLGRTTSRDDVLETESTSSSISSKSDTHHQQHQQVLFHPHHNVATAKPMRSGPASAKPPQLHSDRRAKTLEGSNSVAKGVPLLQPGQVQKQVDHSAMMPSVKQGEEKPQSIAAPAALASPTSQCSQDTKTTIASGASYSDSGAHSITAIPAVKSAIKDTSVALPTTNSNLPVPPPTAVGNGRKYTAEKGSRNFVHSRKCRFFGKGAGCDGGSACLFRHDSGEKTNQKR
Sbjct:    1 MNEKEALALLDLPESPHPDEFSVRAAFKALALPYLALGEGDAQRHTRLWQLCRAYEVLMHINEDIEGVEGDEDLNSEEAEEEEEAYWFDEDGEVDELLRLHWQHCRRRRRDGQQASGDAEAQQPLPAAPALSAASTSLLPQPPSLPCMTSTGKCVVWVGGRPYFLAPDAGWGGRQGVASQAQAVGHKAVADDDEVRARRALAADDRQKRREELIAEEKARRARLQEKDARRRLKAEQRRREKEENGEAKLVTFEDAIQAARQGRFAHFLAMVETVRRKAAGNGWHGARTWQYGSTGGGADNSLHFYHDFLRSRDARRETLLHACVTPWRRLEPGAGGRRRQRPIFPRPGLEGGGLQLSLEAPEGGVAMEETAWQALLHELSESHRGRLHIAAFLLDTDATTGFALFDMSHDLDDQGRAVVHAIAEACDSLFLQLLLRHKARYPRFALDLNQLSALHLTPLHYAAVSAGIETVALLLSHGASPLMRVGGGVGGGVEEGGKGETPLEMVQSCLEGGAIEDDEEEEIIVTRVAGGHWGEGVETGREGGEASYGLESRRVRLQQVAAHLTAAAAARQLTLWQKKEEARERRRQRYSNATEAARRRREERIMNEHGQCGTETPKGPQIEGEVQRDSEAKMSHSSEEMGGKGEHGNSCPVESAATTTASAPSIPCTSVIGSTPNPTAVGAAGLTRPASTYCEPTTLEEPSTESQPPPSQAPVQESSTDAPASNILFLPTASCSLDPPALQDAKPTKRADPAKPTPPAIAEPVKALFKQAALEEKRRKKFEKFCAKIERKENQAMASEEAAVWASLRVEAAAKVKAAEKLLSEAQDAEKACISREARLKAALATEEVREEESCGRRLDDQGCTREGPEGQEATAHVSPQEMDGNAGTSSSIPAVLSATEVSSLSSQSSSILSSPSVPGLGSDKVLVFPQKGEHRDAPPLHSQAHSAVEKQRRGEDSASEAETMSRMAKTSSCQHLRSRQQEHPRQQTEPFGQQQQLRGDLGRTTSRDDVLETESTSSSISSKSDTHHQQHQQVLFHPHHNVATAKPMRSGPASAKPPQLHSDRRAKTLEGSNSVAKGVPLLQPGQVQKQVDHSAMMPSVKQGEEKPQSIAAPAALASPTSQCSQDTKTTIASGASYSDSGAHSITAIPAVKSAIKDTSVALPTTNSNLPVPPPTAVGNGRKYTAEKGSRNFVHSRKCRFFGKGAGCDGGSACLFRHDSGEKTNQKR 1229
The following BLAST results are available for this feature:
BLAST of EWM26307.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108313|gb|EWM26307.1|0.000e+0100.00Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4373rna4373Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications