EWM26306.1, cds4361 (CDS) Nannochloropsis gaditana

Overview
NameEWM26306.1
Unique Namecds4361
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:407092..407784 -
Alignment locationCM002463.1:406686..406952 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26306.1
Productnad-dependent epimerase dehydratase
Orig transcript idgnl|cribi|Naga_100093g18.5103.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:407092..407784 -
CM002463.1supercontigCM002463.1:406686..406952 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|585108312|gb|EWM26306.1| (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query:    1 MWRPLPLVVLFWAWTAWGFSSPLLPDALLAARPRSRGPRHASASYAGRKSTSPFTMMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGLA 319
            MWRPLPLVVLFWAWTAWGFSSPLLPDALLAARPRSRGPRHASASYAGRKSTSPFTMMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGLA
Sbjct:    1 MWRPLPLVVLFWAWTAWGFSSPLLPDALLAARPRSRGPRHASASYAGRKSTSPFTMMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGLA 319          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|553182568|ref|XP_005853751.1| (nad-dependent epimerase dehydratase, partial [Nannochloropsis gaditana CCMP526] >gi|422295312|gb|EKU22611.1| nad-dependent epimerase dehydratase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 355.14 bits (910), Expect = 1.445e-121
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:   56 MMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILI 231
            MMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILI
Sbjct:    1 MMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILI 176          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|873235750|emb|CEL99835.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 202.601 bits (514), Expect = 5.007e-60
Identity = 109/259 (42.08%), Postives = 162/259 (62.55%), Query Frame = 0
Query:   61 LKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLR------EVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRAL--CVVNEEGPPFSEGQW 311
            L   D + V G+TGG GQL+T RL   GR++V+A+ RS  +        E L  +   +E A  D RD  SL   L+D   V++ TGT+AFP+ +W+GGNTP A+D +G + +++ +    ++  +KK    +S+GV R  QLP+SILN FGVLDAK+  E+ +   +   G+D +IVRPGRL+GGP+TN DV+ LLK+E G ++RV +  GD + GD  RVSVAE +V+AL  P   G ++   ++N +G P ++  W
Sbjct:    4 LSDGDTIVVAGATGGVGQLVTQRLAQLGRFKVRALSRSPERASGPGGPLEALAAQG--VEVARGDVRDPSSLPSALADASAVVVCTGTTAFPTGKWKGGNTPKAIDEEGTRAVVEQLR---KQGGLKKFALPTSIGVRRPGQLPFSILNLFGVLDAKKSGEEAVMSASKECGYDYVIVRPGRLIGGPYTNPDVATLLKIEGGDKQRVEIAPGDQMAGDCLRVSVAEAIVQALLCPALDGVSIDFSIINSKGDPPTDADW 257          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|219127756|ref|XP_002184095.1| (nucleoside-diphosphate-sugar epimerases-like protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404326|gb|EEC44273.1| nucleoside-diphosphate-sugar epimerases-like protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 190.66 bits (483), Expect = 5.035e-55
Identity = 109/267 (40.82%), Postives = 154/267 (57.68%), Query Frame = 0
Query:   55 TMMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPK---LEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGL 318
            T +   L+  D V VIG TGG GQL+T +L     Y V+   R  A+   VL  ++ +   L+   A   D+D+    L     V+I+ GT+AFP+ +WRGGNTP A+D++ V NI ++  + P    +KKVV L+SVGV RT ++P+ ILN FGVLDAK+  E  +   A   GF+  I+RPGRLVGGP+TN DV+ LL+V+ GA   V V+ GDSL+GD  R + AE VV+ L   E       + + + P  +   W   F  +
Sbjct:   47 TRLCAALQSGDGVLVIGGTGGVGQLVTQKLA-AAAYDVRVASRDPARAAAVLANDNVRVVSLDLLSATPADLDA---ALQGTAAVVISVGTTAFPTMKWRGGNTPQAIDQEAVTNIAQSARTVP---GLKKVVLLTSVGVDRTGEMPFLILNLFGVLDAKKAGEQAVVDAAVHSGFEYAIIRPGRLVGGPYTNPDVAKLLQVQGGAENGVDVQPGDSLLGDCKRDACAEAVVQCLINEECRNVDFSIASNDQPALTNEAWNQAFRSM 306          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|298707326|emb|CBJ25953.1| (Dihydroflavonol-4-reductase [Ectocarpus siliculosus])

HSP 1 Score: 186.037 bits (471), Expect = 5.453e-53
Identity = 110/267 (41.20%), Postives = 154/267 (57.68%), Query Frame = 0
Query:   60 ELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVL---GGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGP---WTNTDVSALLKV-EEGARKRVV-VEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGL 318
            E+   D V V+G++GG G+L+T  L   G+Y+VK + R+  K +E L    G   ++E  + D  D  SL   +    CV+  TGT+AFPS RW GGNTPDAVD   V N+L+A        ++K+ V LSSVGV R  + P+ ILNAFGVLDAK   E  +R+ A   GF   IVRPG++ G P   ++N+  +      E+G+ KR+V + QGDS  GD    SVAE   + +G+  A+G++  V+N  G   S+G W  LF  L
Sbjct:   72 EISEGDTVVVVGASGGIGRLVTQSLASTGKYKVKGLVRNLEKAKEALLSSAGGGLEIELEQGDILDESSLVAAMKGAACVVACTGTTAFPSKRWNGGNTPDAVDNLAVGNMLRAAAGGG---SLKRFVLLSSVGVTRADKFPFVILNAFGVLDAKAKGEAAVRKAAKEGGFGYSIVRPGQIKGDPFLAYSNSGAAVSPDAPEKGSAKRMVSLRQGDSEAGDVNPSSVAEAFTQTVGQAGAIGKSYTVINSLGDAPSQGTWDELFAKL 335          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|1003384224|dbj|BAU64048.1| (hypothetical protein STA3757_14170 [Stanieria sp. NIES-3757])

HSP 1 Score: 176.022 bits (445), Expect = 4.447e-50
Identity = 102/260 (39.23%), Postives = 150/260 (57.69%), Query Frame = 0
Query:   65 DRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRW------RGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGL 318
            D V V G+TGG GQL+ A+L+ E    V+ + R+EAK +++      ++  A  D RD D L     ++  +I  TGT+AFPS RW      +  N+P+ VD KGV+N++ A +       +++ VF+SS GVLR  + P+++LNAFGVLDAK   E+ +    A+ GF   I+RPGRL+ GP+T+ D++ LLK +   ++ VV+  GDSL G  +R+ VA   V  L  P    +A  +VN    P S   W ALF  L
Sbjct:    6 DLVLVAGATGGVGQLVVAKLL-EKNIPVRVLTRNEAKAKQMF---DDRVAIAIGDIRDRDILSAATQNITHIICCTGTTAFPSSRWDFKNIFQANNSPEEVDAKGVKNLVAAASD------LQRFVFVSSCGVLRKDRFPFNLLNAFGVLDAKLAGEEAI----ASSGFPYTIIRPGRLIDGPYTSYDLNTLLKAKTNGKQAVVIATGDSLNGQTSRIDVANACVECLFYPTTENKAFAIVNSGNRP-SSTNWEALFARL 250          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|505004367|ref|WP_015191469.1| (NAD(P)-dependent oxidoreductase [Stanieria cyanosphaera] >gi|428267855|gb|AFZ33796.1| NAD-dependent epimerase/dehydratase [Stanieria cyanosphaera PCC 7437])

HSP 1 Score: 176.022 bits (445), Expect = 5.114e-50
Identity = 102/261 (39.08%), Postives = 151/261 (57.85%), Query Frame = 0
Query:   65 DRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRW------RGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGLA 319
            D V V G+TGG GQL+ A+L+ E    V  + R+EAK +++      ++  A  D R  ++L     +V  +I  TGT+AFPS RW      +  N+P+ VD KGV+N+L A +       +K+ VF+SS GVLR  Q P+++LNAFGVLDAK + E  +    A+ GF   I+RPGRL+ GP+T+ D++ LLK +   ++ VV+ +GD L G  +R+ VA   V  L  P +  +A  ++N  G   +   W ALF  LA
Sbjct:    6 DLVLVAGATGGVGQLVVAKLL-EKNIAVLVLTRNEAKAKQMF---EDRVAIAVGDIRHRNTLSTVTQNVTHIICCTGTTAFPSSRWDFKNIFQANNSPEEVDAKGVKNLLAAASD------LKRFVFVSSAGVLRKDQFPFNLLNAFGVLDAKLEGEKAI----ASSGFPYTIIRPGRLIDGPYTSYDLNTLLKAKTDGKQAVVIAKGDDLNGQTSRIDVANACVECLFYPMSENKAFAIIN-SGNKSTSTNWEALFAQLA 251          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|168005111|ref|XP_001755254.1| (predicted protein [Physcomitrella patens] >gi|162693382|gb|EDQ79734.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 175.252 bits (443), Expect = 9.597e-50
Identity = 102/253 (40.32%), Postives = 154/253 (60.87%), Query Frame = 0
Query:   67 VCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPK-LEFAEADSRDIDSLYGPLSD-VDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRA--LCVVNEEGPPFSEGQWTALF 315
            + V+G+TGG GQL+ A L+D G   VKAV R   K + + G   P+  +    D+R  +++   + + V  VI  TGT+AFPS RW G N P+  D +GV+N++ A+      ++V+ VV +SS+GV ++ +LP++I+N FGVL  K+  E+ LR      G    I+RPGRL  GP+T+ D++ LLK   G R+ V++ QGD+LVG+A+RV VAE  ++AL  P  +G+   +  V  EGP     +W ALF
Sbjct:   16 ILVVGATGGVGQLVVAALLDRG-IPVKAVLRDAKKAQTLFGQHDPEAFQVLVGDTRRPETMPSSMFEGVTHVICCTGTTAFPSKRWDGDNGPEKTDWEGVRNLVAAV-----PKSVQHVVLVSSIGVTKSNELPWNIMNLFGVLKYKKMGEEFLRD----SGLPYTIIRPGRLTDGPYTSYDLNTLLKATSGTRRDVIIGQGDNLVGEASRVVVAEACIQALDIPCTIGQTYEISSVEGEGPGKDTARWEALF 258          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|1209844944|dbj|GAX34211.1| (NAD-dependent epimerase/dehydratase [Nodularia sp. NIES-3585])

HSP 1 Score: 174.481 bits (441), Expect = 2.925e-49
Identity = 109/287 (37.98%), Postives = 153/287 (53.31%), Query Frame = 0
Query:   56 MMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWR-----------------------GGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNE-EGPPFSEGQWTALFEGL 318
            M  V   V D V V G+TGG GQL+TA L+++G  +V+ + R+ AK  ++    + K+E A  D RDI +L   + D++ +I  TGT+AFPS RW                          N P  VD +GV N++    S      +K  VF+SSVGV R  Q P++ILNAFGVLDAK   E    Q     G    I+RPGRL+ GP+T+ D++ LLK + G ++ V+VE GD L GDA+R+ VA   V ++  P    +A  +VN+   PP     W  +F  L
Sbjct:    1 MTNVTASVEDLVLVAGATGGVGQLVTANLLEKG-MKVRILTRNAAKAAKMF---NQKVEIAVGDIRDISTLPPAMQDINYIICCTGTTAFPSERWEFEPKPNLLEWGRILMDSEYRDRTAKNNPPKVDAEGVSNLVSVAPSH-----LKCFVFVSSVGVHRKDQPPFNILNAFGVLDAKEKGE----QAIINSGLPYTIIRPGRLIDGPYTSYDLNTLLKAKTGGKQGVIVENGDKLAGDASRIDVAAACVESIFHPSTANKAFNLVNKGTRPPVI--HWETIFSQL 272          
BLAST of EWM26306.1 vs. NCBI_GenBank
Match: gi|470113892|ref|XP_004293153.1| (PREDICTED: uncharacterized protein At5g02240 [Fragaria vesca subsp. vesca])

HSP 1 Score: 175.637 bits (444), Expect = 5.463e-49
Identity = 111/285 (38.95%), Postives = 164/285 (57.54%), Query Frame = 0
Query:   37 GPRHASASYAGRKSTSPFT-MMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPK-LEFAEADSRDIDSLYGPLSD-VDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCV--VNEEGPPFSEGQWTALFE 316
            G  HA      +   SP +   +V    +  V VIG TGG GQL+ A L+D    + + + R   K   + G + P+ L+  + D+R+ D L   + + V  VI  TGT+AFPS RW G NTP+ VD +GV+N++ A+      R++K+VV +SSVGV +  +LP+SI+N FGVL  K+  ED+LR      G    I+RPGRL  GP+T+ D++ LLK   G R+ V++ QGD+LVG+ +R+ VAE  ++AL      G+   V  V  EGP   + +W  LF+
Sbjct:   46 GAVHAVQQEEQQLVQSPASDSTSVPCSSSKLVLVIGGTGGVGQLVVASLLDR-NIKSRLLLRDTEKATALFGEQDPETLQVVKGDTRNPDDLDPSIFEGVTHVICCTGTTAFPSKRWSGDNTPEKVDWEGVRNLVSAL-----PRSLKRVVLVSSVGVTKFNELPWSIMNLFGVLKYKKMGEDILRN----SGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGQRRAVLIGQGDTLVGEVSRLVVAEACIQALDIECTEGKIFEVNSVEGEGPGSDQQKWRELFK 320          
The following BLAST results are available for this feature:
BLAST of EWM26306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108312|gb|EWM26306.1|0.000e+0100.00nad-dependent epimerase dehydratase [Nannochlorops... [more]
gi|553182568|ref|XP_005853751.1|1.445e-121100.00nad-dependent epimerase dehydratase, partial [Nann... [more]
gi|873235750|emb|CEL99835.1|5.007e-6042.08unnamed protein product [Vitrella brassicaformis C... [more]
gi|219127756|ref|XP_002184095.1|5.035e-5540.82nucleoside-diphosphate-sugar epimerases-like prote... [more]
gi|298707326|emb|CBJ25953.1|5.453e-5341.20Dihydroflavonol-4-reductase [Ectocarpus siliculosu... [more]
gi|1003384224|dbj|BAU64048.1|4.447e-5039.23hypothetical protein STA3757_14170 [Stanieria sp. ... [more]
gi|505004367|ref|WP_015191469.1|5.114e-5039.08NAD(P)-dependent oxidoreductase [Stanieria cyanosp... [more]
gi|168005111|ref|XP_001755254.1|9.597e-5040.32predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1209844944|dbj|GAX34211.1|2.925e-4937.98NAD-dependent epimerase/dehydratase [Nodularia sp.... [more]
gi|470113892|ref|XP_004293153.1|5.463e-4938.95PREDICTED: uncharacterized protein At5g02240 [Frag... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4371rna4371Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications