EWM26334.1, cds4351 (CDS) Nannochloropsis gaditana

Overview
NameEWM26334.1
Unique Namecds4351
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:382996..383089 +
Alignment locationCM002463.1:383317..383423 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26334.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100078g7.7009.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:382996..383089 +
CM002463.1supercontigCM002463.1:383317..383423 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|585108341|gb|EWM26334.1| (hypothetical protein Naga_100078g7 [Nannochloropsis gaditana])

HSP 1 Score: 130.183 bits (326), Expect = 2.346e-38
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQLE 66
            MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQLE
Sbjct:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQLE 66          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|553186012|ref|XP_005854345.1| (hypothetical protein NGA_0191000, partial [Nannochloropsis gaditana CCMP526] >gi|422294711|gb|EKU22011.1| hypothetical protein NGA_0191000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.028 bits (323), Expect = 1.956e-37
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0
Query:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQLE 66
            MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKME TKRRQLE
Sbjct:   36 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMESTKRRQLE 101          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|673029926|ref|XP_008868924.1| (hypothetical protein H310_05864 [Aphanomyces invadans] >gi|574475319|gb|ETW02319.1| hypothetical protein H310_05864 [Aphanomyces invadans])

HSP 1 Score: 62.003 bits (149), Expect = 2.710e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERT 60
            ++PFL   V+LVP C V GA MELFM+ TGFYD+  + EAE R ++  ER E  R+ E+ 
Sbjct:   10 LKPFL---VKLVPLCFVAGACMELFMVKTGFYDIVTKNEAEVRAQKRAERNEYLRQREQA 66          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|698788014|ref|XP_009827039.1| (hypothetical protein H257_04302 [Aphanomyces astaci] >gi|574118128|gb|ETV83609.1| hypothetical protein H257_04302 [Aphanomyces astaci])

HSP 1 Score: 61.2326 bits (147), Expect = 5.257e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREE-LSRKMERT 60
            ++PFL   V+LVP C VVGA +ELFM+ TGFYD+  + EAE R ++  ER E L RK E+ 
Sbjct:    7 LKPFL---VKLVPVCFVVGAGVELFMVKTGFYDIVTKNEAEVRAQKRAERNEYLLRKREQA 64          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|1173954122|gb|OQS01615.1| (hypothetical protein ACHHYP_20025 [Achlya hypogyna])

HSP 1 Score: 58.151 bits (139), Expect = 8.247e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0
Query:   10 RLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRK 56
            +LVPAC V+GA ME+FM+ TGFYD+  + EAE R  +  EREE  R+
Sbjct:   16 KLVPACFVIGAGMEVFMVKTGFYDIVTKNEAEIRAIKRAEREEYLRR 62          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|298706573|emb|CBJ29532.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 57.7658 bits (138), Expect = 1.596e-9
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    4 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRK 38
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRK
Sbjct:    6 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRK 40          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|1173958792|gb|OQS05103.1| (hypothetical protein THRCLA_20717 [Thraustotheca clavata])

HSP 1 Score: 60.4622 bits (145), Expect = 3.851e-9
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREE-LSRKMERTKRRQ 64
            + P L+   +L+P C V+GA ME+FM+ TGFY++  + EAE R  +  EREE L RK E+    Q
Sbjct:  520 LAPLLK---KLIPTCFVIGAGMEVFMVKTGFYEIVAKNEAEIRAVKRAEREEYLRRKQEKQVENQ 581          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|813185865|ref|XP_012207104.1| (hypothetical protein SPRG_12662 [Saprolegnia parasitica CBS 223.65] >gi|641527905|gb|KDO22164.1| hypothetical protein SPRG_12662 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 56.225 bits (134), Expect = 5.427e-9
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   10 RLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRK 56
            +LVPAC V+G  ME+FM+ TGFYD+  R EAE R  +  ER+E  R+
Sbjct:   16 KLVPACFVIGMGMEVFMVKTGFYDIVARNEAEIRAIKRAERDEYLRR 62          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|669158534|ref|XP_008614829.1| (hypothetical protein SDRG_10610 [Saprolegnia diclina VS20] >gi|530733580|gb|EQC31822.1| hypothetical protein SDRG_10610 [Saprolegnia diclina VS20])

HSP 1 Score: 56.225 bits (134), Expect = 5.486e-9
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   10 RLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRK 56
            +LVPAC V+G  ME+FM+ TGFYD+  R EAE R  +  ER+E  R+
Sbjct:   16 KLVPACFVIGMGMEVFMVKTGFYDIVARNEAEIRAIKRAERDEYLRR 62          
BLAST of EWM26334.1 vs. NCBI_GenBank
Match: gi|635365410|emb|CCI46203.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 53.5286 bits (127), Expect = 4.602e-8
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQARER 50
            +RP L+   +L+P C V GA++ELFM+ TGFY++    EAERR++  R R
Sbjct:    8 LRPILQ---KLIPVCFVTGAAIELFMVKTGFYEIVTNAEAERRLQFERMR 54          
The following BLAST results are available for this feature:
BLAST of EWM26334.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108341|gb|EWM26334.1|2.346e-38100.00hypothetical protein Naga_100078g7 [Nannochloropsi... [more]
gi|553186012|ref|XP_005854345.1|1.956e-3798.48hypothetical protein NGA_0191000, partial [Nannoch... [more]
gi|673029926|ref|XP_008868924.1|2.710e-1150.00hypothetical protein H310_05864 [Aphanomyces invad... [more]
gi|698788014|ref|XP_009827039.1|5.257e-1152.46hypothetical protein H257_04302 [Aphanomyces astac... [more]
gi|1173954122|gb|OQS01615.1|8.247e-1055.32hypothetical protein ACHHYP_20025 [Achlya hypogyna... [more]
gi|298706573|emb|CBJ29532.1|1.596e-971.43expressed unknown protein [Ectocarpus siliculosus][more]
gi|1173958792|gb|OQS05103.1|3.851e-944.62hypothetical protein THRCLA_20717 [Thraustotheca c... [more]
gi|813185865|ref|XP_012207104.1|5.427e-953.19hypothetical protein SPRG_12662 [Saprolegnia paras... [more]
gi|669158534|ref|XP_008614829.1|5.486e-953.19hypothetical protein SDRG_10610 [Saprolegnia dicli... [more]
gi|635365410|emb|CCI46203.1|4.602e-848.00unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4361rna4361Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications