EWM26323.1, cds4341 (CDS) Nannochloropsis gaditana

Overview
NameEWM26323.1
Unique Namecds4341
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:361411..361449 -
Alignment locationCM002463.1:360507..361178 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26323.1
Productdna replication complex gins protein psf2
Orig transcript idgnl|cribi|Naga_100078g18.6998.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:361411..361449 -
CM002463.1supercontigCM002463.1:360507..361178 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007257GINS_Psf2
IPR021151GINS_complex
Homology
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|585108330|gb|EWM26323.1| (dna replication complex gins protein psf2 [Nannochloropsis gaditana])

HSP 1 Score: 478.789 bits (1231), Expect = 6.677e-171
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVGRRLGVGGAASVAGERTGSGRNGPPRKLRRFREEAAREGTN 236
            MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVGRRLGVGGAASVAGERTGSGRNGPPRKLRRFREEAAREGTN
Sbjct:    1 MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVGRRLGVGGAASVAGERTGSGRNGPPRKLRRFREEAAREGTN 236          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|298714383|emb|CBJ27440.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 178.333 bits (451), Expect = 4.221e-52
Identity = 83/181 (45.86%), Postives = 123/181 (67.96%), Query Frame = 0
Query:    3 AQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQE 183
            AQ  ++E+EF+AE+ ++EI  +F H PL LI+G FGPF P  RAKVPLWL ++LKK++KC++  P ++   +L +VLR+ER    +F  LP +Y+EIA+LLL TA+D+   PDR R+L+ED+ENVR  K+  G+   +  V +     + K+N +GAME+  VR F  EA+   Y +SGQ+
Sbjct:   10 AQLTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQ-----AVKVNDLGAMELLPVRSFFAEALASLYVVSGQK 185          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1173944792|gb|OQR93485.1| (DNA replication complex GINS protein PSF2 [Achlya hypogyna])

HSP 1 Score: 157.147 bits (396), Expect = 2.263e-44
Identity = 80/182 (43.96%), Postives = 119/182 (65.38%), Query Frame = 0
Query:    6 RSSEMEFLAEEMIVEI----EARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQE 183
            RSSEMEFLAE+ ++ I    E + N   L  I G FGPF+P+  A+VPLWL + LK+  KCR++ P W   EHL E +  E + E +F+ LPF+Y+E+ATLLL  AA +    ++ R ++EDI+++R +KIR GL  +++ V  G S  + ++N+V AMEI +VR F+T ++  FY L+  E
Sbjct:    5 RSSEMEFLAEQELISIMPFFELKENAGMLHGISGDFGPFHPSMAAQVPLWLAIKLKQLNKCRIIQPSWFTVEHLMERMEGEGSSE-LFESLPFHYLEVATLLLKHAAADMEQAEKMRLILEDIQHLRQDKIRNGLCRIANDVQTGGSAYAVQLNNVAAMEINSVRQFMTGSLKKFYELNALE 185          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1214677771|gb|OWY98286.1| (DNA replication complex GINS protein PSF2 [Phytophthora megakarya])

HSP 1 Score: 157.147 bits (396), Expect = 3.323e-44
Identity = 81/190 (42.63%), Postives = 120/190 (63.16%), Query Frame = 0
Query:    3 AQSRSSEMEFLAEEMIVEIEARF----NHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQG 188
            A   +SE EFLAE+ ++ I   F    N+  L LI G FGPF P     VPLWL + LK+  KCR++ P WL  E+L   L +E+A E  F++LPF+Y+EIA+LLL  A ++    +  RSL+ED++NVR +KIR GL  ++  V  G + ++ +MN++ A+EI++VR F+  ++  FY LS   V A+G
Sbjct:    2 ATLSASETEFLAEQELIAIMPHFHLRDNNAMLNLISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVEYLTSRLEREKASEA-FEELPFHYLEIASLLLKNAPEDLDQGEHLRSLLEDLQNVRQDKIRNGLAKIAGDVQGGGTALAIQMNNISALEISSVREFMLGSLNQFYQLSQLSVGAEG 190          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|669158634|ref|XP_008614879.1| (hypothetical protein SDRG_10656 [Saprolegnia diclina VS20] >gi|530733238|gb|EQC31480.1| hypothetical protein SDRG_10656 [Saprolegnia diclina VS20])

HSP 1 Score: 157.918 bits (398), Expect = 9.249e-44
Identity = 84/187 (44.92%), Postives = 117/187 (62.57%), Query Frame = 0
Query:    6 RSSEMEFLAEEMIVEI----EARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLS---GQEVV 185
            RSSEMEFLAE+ +V +    E + N   L  I G FGPF+P+    VPLWL + LK+  KCR++ P W   EHL E L  E   E  F+ LPF+Y+EIATLLL  A D+    ++ R ++EDI++ R EKIR GL  ++  V  G S  + ++N+V AMEI +VR F+T+++  FY L+   G EV+
Sbjct:   73 RSSEMEFLAEQELVSVMPFFELKENGGLLHGISGDFGPFHPSMATHVPLWLAIKLKQLNKCRILQPSWFTVEHLMERLEGENTSEA-FESLPFHYLEIATLLLKNAPDDMEQAEKMRLILEDIQHTRQEKIRNGLCVLAKDVQTGGSAHAVQLNNVAAMEINSVRQFMTKSLKKFYELNVMGGAEVI 258          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|698801904|ref|XP_009833981.1| (hypothetical protein H257_09462 [Aphanomyces astaci] >gi|574110939|gb|ETV76436.1| hypothetical protein H257_09462 [Aphanomyces astaci])

HSP 1 Score: 155.221 bits (391), Expect = 1.652e-43
Identity = 80/193 (41.45%), Postives = 120/193 (62.18%), Query Frame = 0
Query:    1 MAAQSRSSEMEFLAEEMIVEIEARF----NHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGG 189
            M    RS+EMEF+AE+ ++ I   F    N   L  I G FGPF+P+   +VPLWL LSLK+ +KCR++ P W    HL + L +E + E +F++LPF+Y+EIA LL+  AAD+    +  R ++EDI+ VR +KIR GL  ++  V  G +  + ++N+V AMEI +VR F+T+++  FY L    + A G 
Sbjct:    1 MLNHVRSNEMEFMAEQELISIMPYFELQENGGRLNGISGDFGPFHPSTPTQVPLWLALSLKQLQKCRILQPSWFTVAHLKDRLDKETSSE-LFEELPFHYLEIAALLVKHAADDMQQVETIRLVLEDIQQVRQDKIRNGLVRIAADVQTGGTAYAVQLNNVAAMEINSVRQFMTKSLTKFYGLGAARLTADGA 192          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|813164434|ref|XP_012203277.1| (hypothetical protein SPRG_08643 [Saprolegnia parasitica CBS 223.65] >gi|641531941|gb|KDO25990.1| hypothetical protein SPRG_08643 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 150.599 bits (379), Expect = 4.826e-42
Identity = 78/179 (43.58%), Postives = 113/179 (63.13%), Query Frame = 0
Query:    6 RSSEMEFLAEEMIVEI----EARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLS 180
            RSSEMEFLAE+ ++ +    E + N   L  I G +GPF+P+    VPLWL + LK+  KCR++ P W   EHL E L  E   E  F+ LPF+Y+E+ATLLL  A D+    ++ R ++EDI++ R EKIR GL  ++  V  G S  + ++N+V AMEI +VR F+T+++  FY L+
Sbjct:    5 RSSEMEFLAEQELISVMPFFELKENGGLLHGIGGDYGPFHPSMATPVPLWLAIKLKQLNKCRILQPSWFTVEHLMERLEGENTSEA-FESLPFHYLEMATLLLKNAPDDMEQAEKMRLILEDIQHTRQEKIRNGLCVLAKDVQTGGSAHAVQLNNVAAMEINSVRQFMTKSLKKFYELN 182          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1040859495|ref|XP_017240516.1| (PREDICTED: DNA replication complex GINS protein PSF2 [Daucus carota subsp. sativus])

HSP 1 Score: 150.984 bits (380), Expect = 5.740e-42
Identity = 83/201 (41.29%), Postives = 115/201 (57.21%), Query Frame = 0
Query:    1 MAAQS-------RSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGG 194
            MA+QS        ++E+EFLAE+ +VEI       PL LI G FGPF P    +VPLWL ++LKK+ KC + LP+W+  E L +VL  ER     FQ LPF+YVEIA LL   A D+ P     RSL+EDI++VR  KI  GL+ +S+         + K+ ++ AME+  VR F+ +A+  FY L   E++     R   
Sbjct:    1 MASQSDPHGSAFSAAELEFLAEDEMVEIVPNIRMDPLNLISGDFGPFRPQIATQVPLWLAVALKKRGKCTIRLPDWMSVEKLTQVLEAERDSARDFQPLPFHYVEIARLLFDHARDDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISE------RTYAVKLLNLSAMEVNIVRPFVAKALETFYKLDSPEMIQDAERRPDA 195          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1109214639|ref|XP_019181764.1| (PREDICTED: DNA replication complex GINS protein PSF2-like isoform X1 [Ipomoea nil])

HSP 1 Score: 150.214 bits (378), Expect = 1.055e-41
Identity = 79/189 (41.80%), Postives = 114/189 (60.32%), Query Frame = 0
Query:    2 AAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGG 190
            A+   ++E+EFLAE+ +VEI       PL LI G FGPF P    +VPLWL ++LKK+ KC +  PEW+  E L +VL  ER  EG FQ LPF+YVEI+ +L   A ++ P     RSL+EDI++VR  KI  GL+     ++      + ++ ++ AME   VR F+T A+  FY LS  E++++  G
Sbjct:    9 ASAISAAELEFLAEDEMVEIVPNMRMEPLNLICGDFGPFRPQIAIQVPLWLAVALKKRGKCTIRPPEWMSVEKLTQVLEAERDSEG-FQSLPFHYVEISRILFDHAREDIPDIYMVRSLIEDIKDVRFHKIGTGLE-----IISKERTSALRLKNLSAMEANVVRPFVTTALQTFYKLSSPELISESNG 191          
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1026060092|ref|XP_016574542.1| (PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Capsicum annuum])

HSP 1 Score: 149.443 bits (376), Expect = 2.347e-41
Identity = 85/196 (43.37%), Postives = 116/196 (59.18%), Query Frame = 0
Query:    1 MAAQSRSS------EMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGG 190
            MA QS +S      E+EFLAE+ IVEI       PL LI G FGPF P   A+VPLWL ++LKK+ KC +  PEW+  E L +VL  ER  E  FQ LPF+YVEI+ LL   A ++ P     RSL+EDI++VR  KI  GL+ +S  V       + ++ ++ AME   VR F+T+A+  F+ L+  E + + G 
Sbjct:    1 MANQSDNSIAFSAEELEFLAEDEIVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGKCTIRPPEWMSVEKLTQVLEAERDSEK-FQLLPFHYVEISRLLFDHAREDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISKEV-----TYALRLKNLSAMEANIVRPFVTKALQTFHKLNTSEAIPESGS 190          
The following BLAST results are available for this feature:
BLAST of EWM26323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108330|gb|EWM26323.1|6.677e-171100.00dna replication complex gins protein psf2 [Nannoch... [more]
gi|298714383|emb|CBJ27440.1|4.221e-5245.86conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173944792|gb|OQR93485.1|2.263e-4443.96DNA replication complex GINS protein PSF2 [Achlya ... [more]
gi|1214677771|gb|OWY98286.1|3.323e-4442.63DNA replication complex GINS protein PSF2 [Phytoph... [more]
gi|669158634|ref|XP_008614879.1|9.249e-4444.92hypothetical protein SDRG_10656 [Saprolegnia dicli... [more]
gi|698801904|ref|XP_009833981.1|1.652e-4341.45hypothetical protein H257_09462 [Aphanomyces astac... [more]
gi|813164434|ref|XP_012203277.1|4.826e-4243.58hypothetical protein SPRG_08643 [Saprolegnia paras... [more]
gi|1040859495|ref|XP_017240516.1|5.740e-4241.29PREDICTED: DNA replication complex GINS protein PS... [more]
gi|1109214639|ref|XP_019181764.1|1.055e-4141.80PREDICTED: DNA replication complex GINS protein PS... [more]
gi|1026060092|ref|XP_016574542.1|2.347e-4143.37PREDICTED: DNA replication complex GINS protein PS... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4351rna4351Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications