EWM26323.1, cds4341 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|585108330|gb|EWM26323.1| (dna replication complex gins protein psf2 [Nannochloropsis gaditana]) HSP 1 Score: 478.789 bits (1231), Expect = 6.677e-171 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVGRRLGVGGAASVAGERTGSGRNGPPRKLRRFREEAAREGTN 236
MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVGRRLGVGGAASVAGERTGSGRNGPPRKLRRFREEAAREGTN
Sbjct: 1 MAAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGGVGRRLGVGGAASVAGERTGSGRNGPPRKLRRFREEAAREGTN 236
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|298714383|emb|CBJ27440.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 178.333 bits (451), Expect = 4.221e-52 Identity = 83/181 (45.86%), Postives = 123/181 (67.96%), Query Frame = 0
Query: 3 AQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQE 183
AQ ++E+EF+AE+ ++EI +F H PL LI+G FGPF P RAKVPLWL ++LKK++KC++ P ++ +L +VLR+ER +F LP +Y+EIA+LLL TA+D+ PDR R+L+ED+ENVR K+ G+ + V + + K+N +GAME+ VR F EA+ Y +SGQ+
Sbjct: 10 AQLTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQ-----AVKVNDLGAMELLPVRSFFAEALASLYVVSGQK 185
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1173944792|gb|OQR93485.1| (DNA replication complex GINS protein PSF2 [Achlya hypogyna]) HSP 1 Score: 157.147 bits (396), Expect = 2.263e-44 Identity = 80/182 (43.96%), Postives = 119/182 (65.38%), Query Frame = 0
Query: 6 RSSEMEFLAEEMIVEI----EARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQE 183
RSSEMEFLAE+ ++ I E + N L I G FGPF+P+ A+VPLWL + LK+ KCR++ P W EHL E + E + E +F+ LPF+Y+E+ATLLL AA + ++ R ++EDI+++R +KIR GL +++ V G S + ++N+V AMEI +VR F+T ++ FY L+ E
Sbjct: 5 RSSEMEFLAEQELISIMPFFELKENAGMLHGISGDFGPFHPSMAAQVPLWLAIKLKQLNKCRIIQPSWFTVEHLMERMEGEGSSE-LFESLPFHYLEVATLLLKHAAADMEQAEKMRLILEDIQHLRQDKIRNGLCRIANDVQTGGSAYAVQLNNVAAMEINSVRQFMTGSLKKFYELNALE 185
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1214677771|gb|OWY98286.1| (DNA replication complex GINS protein PSF2 [Phytophthora megakarya]) HSP 1 Score: 157.147 bits (396), Expect = 3.323e-44 Identity = 81/190 (42.63%), Postives = 120/190 (63.16%), Query Frame = 0
Query: 3 AQSRSSEMEFLAEEMIVEIEARF----NHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQG 188
A +SE EFLAE+ ++ I F N+ L LI G FGPF P VPLWL + LK+ KCR++ P WL E+L L +E+A E F++LPF+Y+EIA+LLL A ++ + RSL+ED++NVR +KIR GL ++ V G + ++ +MN++ A+EI++VR F+ ++ FY LS V A+G
Sbjct: 2 ATLSASETEFLAEQELIAIMPHFHLRDNNAMLNLISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVEYLTSRLEREKASEA-FEELPFHYLEIASLLLKNAPEDLDQGEHLRSLLEDLQNVRQDKIRNGLAKIAGDVQGGGTALAIQMNNISALEISSVREFMLGSLNQFYQLSQLSVGAEG 190
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|669158634|ref|XP_008614879.1| (hypothetical protein SDRG_10656 [Saprolegnia diclina VS20] >gi|530733238|gb|EQC31480.1| hypothetical protein SDRG_10656 [Saprolegnia diclina VS20]) HSP 1 Score: 157.918 bits (398), Expect = 9.249e-44 Identity = 84/187 (44.92%), Postives = 117/187 (62.57%), Query Frame = 0
Query: 6 RSSEMEFLAEEMIVEI----EARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLS---GQEVV 185
RSSEMEFLAE+ +V + E + N L I G FGPF+P+ VPLWL + LK+ KCR++ P W EHL E L E E F+ LPF+Y+EIATLLL A D+ ++ R ++EDI++ R EKIR GL ++ V G S + ++N+V AMEI +VR F+T+++ FY L+ G EV+
Sbjct: 73 RSSEMEFLAEQELVSVMPFFELKENGGLLHGISGDFGPFHPSMATHVPLWLAIKLKQLNKCRILQPSWFTVEHLMERLEGENTSEA-FESLPFHYLEIATLLLKNAPDDMEQAEKMRLILEDIQHTRQEKIRNGLCVLAKDVQTGGSAHAVQLNNVAAMEINSVRQFMTKSLKKFYELNVMGGAEVI 258
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|698801904|ref|XP_009833981.1| (hypothetical protein H257_09462 [Aphanomyces astaci] >gi|574110939|gb|ETV76436.1| hypothetical protein H257_09462 [Aphanomyces astaci]) HSP 1 Score: 155.221 bits (391), Expect = 1.652e-43 Identity = 80/193 (41.45%), Postives = 120/193 (62.18%), Query Frame = 0
Query: 1 MAAQSRSSEMEFLAEEMIVEIEARF----NHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGG 189
M RS+EMEF+AE+ ++ I F N L I G FGPF+P+ +VPLWL LSLK+ +KCR++ P W HL + L +E + E +F++LPF+Y+EIA LL+ AAD+ + R ++EDI+ VR +KIR GL ++ V G + + ++N+V AMEI +VR F+T+++ FY L + A G
Sbjct: 1 MLNHVRSNEMEFMAEQELISIMPYFELQENGGRLNGISGDFGPFHPSTPTQVPLWLALSLKQLQKCRILQPSWFTVAHLKDRLDKETSSE-LFEELPFHYLEIAALLVKHAADDMQQVETIRLVLEDIQQVRQDKIRNGLVRIAADVQTGGTAYAVQLNNVAAMEINSVRQFMTKSLTKFYGLGAARLTADGA 192
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|813164434|ref|XP_012203277.1| (hypothetical protein SPRG_08643 [Saprolegnia parasitica CBS 223.65] >gi|641531941|gb|KDO25990.1| hypothetical protein SPRG_08643 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 150.599 bits (379), Expect = 4.826e-42 Identity = 78/179 (43.58%), Postives = 113/179 (63.13%), Query Frame = 0
Query: 6 RSSEMEFLAEEMIVEI----EARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLS 180
RSSEMEFLAE+ ++ + E + N L I G +GPF+P+ VPLWL + LK+ KCR++ P W EHL E L E E F+ LPF+Y+E+ATLLL A D+ ++ R ++EDI++ R EKIR GL ++ V G S + ++N+V AMEI +VR F+T+++ FY L+
Sbjct: 5 RSSEMEFLAEQELISVMPFFELKENGGLLHGIGGDYGPFHPSMATPVPLWLAIKLKQLNKCRILQPSWFTVEHLMERLEGENTSEA-FESLPFHYLEMATLLLKNAPDDMEQAEKMRLILEDIQHTRQEKIRNGLCVLAKDVQTGGSAHAVQLNNVAAMEINSVRQFMTKSLKKFYELN 182
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1040859495|ref|XP_017240516.1| (PREDICTED: DNA replication complex GINS protein PSF2 [Daucus carota subsp. sativus]) HSP 1 Score: 150.984 bits (380), Expect = 5.740e-42 Identity = 83/201 (41.29%), Postives = 115/201 (57.21%), Query Frame = 0
Query: 1 MAAQS-------RSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGGREGG 194
MA+QS ++E+EFLAE+ +VEI PL LI G FGPF P +VPLWL ++LKK+ KC + LP+W+ E L +VL ER FQ LPF+YVEIA LL A D+ P RSL+EDI++VR KI GL+ +S+ + K+ ++ AME+ VR F+ +A+ FY L E++ R
Sbjct: 1 MASQSDPHGSAFSAAELEFLAEDEMVEIVPNIRMDPLNLISGDFGPFRPQIATQVPLWLAVALKKRGKCTIRLPDWMSVEKLTQVLEAERDSARDFQPLPFHYVEIARLLFDHARDDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISE------RTYAVKLLNLSAMEVNIVRPFVAKALETFYKLDSPEMIQDAERRPDA 195
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1109214639|ref|XP_019181764.1| (PREDICTED: DNA replication complex GINS protein PSF2-like isoform X1 [Ipomoea nil]) HSP 1 Score: 150.214 bits (378), Expect = 1.055e-41 Identity = 79/189 (41.80%), Postives = 114/189 (60.32%), Query Frame = 0
Query: 2 AAQSRSSEMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGG 190
A+ ++E+EFLAE+ +VEI PL LI G FGPF P +VPLWL ++LKK+ KC + PEW+ E L +VL ER EG FQ LPF+YVEI+ +L A ++ P RSL+EDI++VR KI GL+ ++ + ++ ++ AME VR F+T A+ FY LS E++++ G
Sbjct: 9 ASAISAAELEFLAEDEMVEIVPNMRMEPLNLICGDFGPFRPQIAIQVPLWLAVALKKRGKCTIRPPEWMSVEKLTQVLEAERDSEG-FQSLPFHYVEISRILFDHAREDIPDIYMVRSLIEDIKDVRFHKIGTGLE-----IISKERTSALRLKNLSAMEANVVRPFVTTALQTFYKLSSPELISESNG 191
BLAST of EWM26323.1 vs. NCBI_GenBank
Match: gi|1026060092|ref|XP_016574542.1| (PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Capsicum annuum]) HSP 1 Score: 149.443 bits (376), Expect = 2.347e-41 Identity = 85/196 (43.37%), Postives = 116/196 (59.18%), Query Frame = 0
Query: 1 MAAQSRSS------EMEFLAEEMIVEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQEVVAQGGG 190
MA QS +S E+EFLAE+ IVEI PL LI G FGPF P A+VPLWL ++LKK+ KC + PEW+ E L +VL ER E FQ LPF+YVEI+ LL A ++ P RSL+EDI++VR KI GL+ +S V + ++ ++ AME VR F+T+A+ F+ L+ E + + G
Sbjct: 1 MANQSDNSIAFSAEELEFLAEDEIVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGKCTIRPPEWMSVEKLTQVLEAERDSEK-FQLLPFHYVEISRLLFDHAREDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISKEV-----TYALRLKNLSAMEANIVRPFVTKALQTFHKLNTSEAIPESGS 190 The following BLAST results are available for this feature:
BLAST of EWM26323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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