EWM26379.1, cds4292 (CDS) Nannochloropsis gaditana

Overview
NameEWM26379.1
Unique Namecds4292
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:220318..223284 -

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Properties
Property NameValue
Protein idEWM26379.1
Productphd finger domain protein
Orig transcript idgnl|cribi|Naga_100031g33.2262.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:220318..223284 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR007087Znf_C2H2
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD
Homology
BLAST of EWM26379.1 vs. NCBI_GenBank
Match: gi|585108389|gb|EWM26379.1| (phd finger domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1989.93 bits (5154), Expect = 0.000e+0
Identity = 988/988 (100.00%), Postives = 988/988 (100.00%), Query Frame = 0
Query:    1 MRRNLAPARVLYRKMVAAFEGGKSAFGRRRKERDVVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRRNGQEMYHGRRFGDRAWLAFCDLHTDPLRFVEIMTKVGVSYEPSAEEADDGSMAFERLWEVEREKEERQAARRAGHGEKKLPEGVGRRGEGYARFKQMLKEEDRREEEVDIRRRKEEEDVKRRQEEYNATVFAAATHQHQLQLQQQQQQQEVLRQQQQQQPPPPPLHPMPPMSIHGDFMSALPLPGGGGAPAHPPSMPVPPFPLPGMPMGSMAAALGGKPLNFPVPSFPPPPPPPLPSAHPGDPPPLASRYPANFGGGGGGDMVDFAPPRMPAVMREAAYDGKPMGKEGGEGHGGDGGMRLGSLWSALGENGGQAGQSEGSRLGNTASVGFPSVPPFPASAGAGGKAKKVKKKTREKRLQRVLDHFQIPYPASLLLGPAPSKEVAVQGMGEKGMGGQAGQEGGGSPKQQKSIKRRKREESLEGWVEAHLASFPVAARKALLEANPGLKQEEEEETRSTSFPPSLPPSLMMALPPSMGSEGLSVGGGHGEGGSGGDSFAYLAHFPPPAPLGLSSTRGGGSSSTLGLEGSAGAGKDDQEAGMKRKFPCEDCGSVLGTMANLQRHRKRACKGSSPLGAHGKRGSFDVSIDSRMSDSGPKGGDRDMVMTAITPLPVDSDGGGGGAQGKDEGLREGDDVMPGIEGSPSNPSVAPSGLEMREGDGMGGSGREEERATSGAPAASKSSYTDVMTI 988
            MRRNLAPARVLYRKMVAAFEGGKSAFGRRRKERDVVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRRNGQEMYHGRRFGDRAWLAFCDLHTDPLRFVEIMTKVGVSYEPSAEEADDGSMAFERLWEVEREKEERQAARRAGHGEKKLPEGVGRRGEGYARFKQMLKEEDRREEEVDIRRRKEEEDVKRRQEEYNATVFAAATHQHQLQLQQQQQQQEVLRQQQQQQPPPPPLHPMPPMSIHGDFMSALPLPGGGGAPAHPPSMPVPPFPLPGMPMGSMAAALGGKPLNFPVPSFPPPPPPPLPSAHPGDPPPLASRYPANFGGGGGGDMVDFAPPRMPAVMREAAYDGKPMGKEGGEGHGGDGGMRLGSLWSALGENGGQAGQSEGSRLGNTASVGFPSVPPFPASAGAGGKAKKVKKKTREKRLQRVLDHFQIPYPASLLLGPAPSKEVAVQGMGEKGMGGQAGQEGGGSPKQQKSIKRRKREESLEGWVEAHLASFPVAARKALLEANPGLKQEEEEETRSTSFPPSLPPSLMMALPPSMGSEGLSVGGGHGEGGSGGDSFAYLAHFPPPAPLGLSSTRGGGSSSTLGLEGSAGAGKDDQEAGMKRKFPCEDCGSVLGTMANLQRHRKRACKGSSPLGAHGKRGSFDVSIDSRMSDSGPKGGDRDMVMTAITPLPVDSDGGGGGAQGKDEGLREGDDVMPGIEGSPSNPSVAPSGLEMREGDGMGGSGREEERATSGAPAASKSSYTDVMTI
Sbjct:    1 MRRNLAPARVLYRKMVAAFEGGKSAFGRRRKERDVVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRRNGQEMYHGRRFGDRAWLAFCDLHTDPLRFVEIMTKVGVSYEPSAEEADDGSMAFERLWEVEREKEERQAARRAGHGEKKLPEGVGRRGEGYARFKQMLKEEDRREEEVDIRRRKEEEDVKRRQEEYNATVFAAATHQHQLQLQQQQQQQEVLRQQQQQQPPPPPLHPMPPMSIHGDFMSALPLPGGGGAPAHPPSMPVPPFPLPGMPMGSMAAALGGKPLNFPVPSFPPPPPPPLPSAHPGDPPPLASRYPANFGGGGGGDMVDFAPPRMPAVMREAAYDGKPMGKEGGEGHGGDGGMRLGSLWSALGENGGQAGQSEGSRLGNTASVGFPSVPPFPASAGAGGKAKKVKKKTREKRLQRVLDHFQIPYPASLLLGPAPSKEVAVQGMGEKGMGGQAGQEGGGSPKQQKSIKRRKREESLEGWVEAHLASFPVAARKALLEANPGLKQEEEEETRSTSFPPSLPPSLMMALPPSMGSEGLSVGGGHGEGGSGGDSFAYLAHFPPPAPLGLSSTRGGGSSSTLGLEGSAGAGKDDQEAGMKRKFPCEDCGSVLGTMANLQRHRKRACKGSSPLGAHGKRGSFDVSIDSRMSDSGPKGGDRDMVMTAITPLPVDSDGGGGGAQGKDEGLREGDDVMPGIEGSPSNPSVAPSGLEMREGDGMGGSGREEERATSGAPAASKSSYTDVMTI 988          
BLAST of EWM26379.1 vs. NCBI_GenBank
Match: gi|1024071993|gb|KZV65045.1| (hypothetical protein PENSPDRAFT_756837 [Peniophora sp. CONT])

HSP 1 Score: 91.6633 bits (226), Expect = 6.080e-15
Identity = 68/267 (25.47%), Postives = 95/267 (35.58%), Query Frame = 0
Query:   35 VVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRR 301
            ++ R E    D ++  GGG  RE E  GAE+   +CAVC  +E    N++VFCDGCN+AVH  CY V  +P G W C+ C   L  EV                              P  C LC   GGA ++   G                           EW H+ C  W+              P    +    M   T  ++                  +P   +K     C  P +G  ++C++  C+  FH TC RR
Sbjct:   99 IMDRLEKEHFDLQKAAGGG--REAEMAGAEDA--QCAVCEDSEGENTNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKC--ALSPEV------------------------------PVSCALCPAEGGAFKQDNRG---------------------------EWVHLLCAIWI--------------PETGVMNDVFMEPITGTDR------------------IPRQRWKLKCGLCDDP-EGACIQCNNRSCYFAFHVTCARR 269          
BLAST of EWM26379.1 vs. NCBI_GenBank
Match: gi|313217923|emb|CBY41301.1| (unnamed protein product [Oikopleura dioica] >gi|313236272|emb|CBY11594.1| unnamed protein product [Oikopleura dioica])

HSP 1 Score: 76.6406 bits (187), Expect = 6.035e-11
Identity = 43/158 (27.22%), Postives = 66/158 (41.77%), Query Frame = 0
Query:   70 CAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGE----IPHL 223
            C++C  T+A   + LV+CD CN+AVH  CY + ++P G W C +C          K   K   ++            PL+ P   +C+LC  A GAM++                        P+ G E+ WAH+ C  +   +  R  E    I H+
Sbjct:   32 CSICEITDANDVDPLVYCDKCNVAVHKLCYGIKTIPEGDWFCNIC----------KYWRKRRSKD------------PLVTPRTFKCVLCFGARGAMKEV----------------------YPKRGSEDSWAHILCALFFEEVQFRDPETSSGISHI 145          
The following BLAST results are available for this feature:
BLAST of EWM26379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108389|gb|EWM26379.1|0.000e+0100.00phd finger domain protein [Nannochloropsis gaditan... [more]
gi|1024071993|gb|KZV65045.1|6.080e-1525.47hypothetical protein PENSPDRAFT_756837 [Peniophora... [more]
gi|313217923|emb|CBY41301.1|6.035e-1127.22unnamed protein product [Oikopleura dioica] >gi|31... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4302rna4302Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications