EWM26379.1, cds4292 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26379.1 vs. NCBI_GenBank
Match: gi|585108389|gb|EWM26379.1| (phd finger domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1989.93 bits (5154), Expect = 0.000e+0 Identity = 988/988 (100.00%), Postives = 988/988 (100.00%), Query Frame = 0
Query: 1 MRRNLAPARVLYRKMVAAFEGGKSAFGRRRKERDVVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRRNGQEMYHGRRFGDRAWLAFCDLHTDPLRFVEIMTKVGVSYEPSAEEADDGSMAFERLWEVEREKEERQAARRAGHGEKKLPEGVGRRGEGYARFKQMLKEEDRREEEVDIRRRKEEEDVKRRQEEYNATVFAAATHQHQLQLQQQQQQQEVLRQQQQQQPPPPPLHPMPPMSIHGDFMSALPLPGGGGAPAHPPSMPVPPFPLPGMPMGSMAAALGGKPLNFPVPSFPPPPPPPLPSAHPGDPPPLASRYPANFGGGGGGDMVDFAPPRMPAVMREAAYDGKPMGKEGGEGHGGDGGMRLGSLWSALGENGGQAGQSEGSRLGNTASVGFPSVPPFPASAGAGGKAKKVKKKTREKRLQRVLDHFQIPYPASLLLGPAPSKEVAVQGMGEKGMGGQAGQEGGGSPKQQKSIKRRKREESLEGWVEAHLASFPVAARKALLEANPGLKQEEEEETRSTSFPPSLPPSLMMALPPSMGSEGLSVGGGHGEGGSGGDSFAYLAHFPPPAPLGLSSTRGGGSSSTLGLEGSAGAGKDDQEAGMKRKFPCEDCGSVLGTMANLQRHRKRACKGSSPLGAHGKRGSFDVSIDSRMSDSGPKGGDRDMVMTAITPLPVDSDGGGGGAQGKDEGLREGDDVMPGIEGSPSNPSVAPSGLEMREGDGMGGSGREEERATSGAPAASKSSYTDVMTI 988
MRRNLAPARVLYRKMVAAFEGGKSAFGRRRKERDVVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRRNGQEMYHGRRFGDRAWLAFCDLHTDPLRFVEIMTKVGVSYEPSAEEADDGSMAFERLWEVEREKEERQAARRAGHGEKKLPEGVGRRGEGYARFKQMLKEEDRREEEVDIRRRKEEEDVKRRQEEYNATVFAAATHQHQLQLQQQQQQQEVLRQQQQQQPPPPPLHPMPPMSIHGDFMSALPLPGGGGAPAHPPSMPVPPFPLPGMPMGSMAAALGGKPLNFPVPSFPPPPPPPLPSAHPGDPPPLASRYPANFGGGGGGDMVDFAPPRMPAVMREAAYDGKPMGKEGGEGHGGDGGMRLGSLWSALGENGGQAGQSEGSRLGNTASVGFPSVPPFPASAGAGGKAKKVKKKTREKRLQRVLDHFQIPYPASLLLGPAPSKEVAVQGMGEKGMGGQAGQEGGGSPKQQKSIKRRKREESLEGWVEAHLASFPVAARKALLEANPGLKQEEEEETRSTSFPPSLPPSLMMALPPSMGSEGLSVGGGHGEGGSGGDSFAYLAHFPPPAPLGLSSTRGGGSSSTLGLEGSAGAGKDDQEAGMKRKFPCEDCGSVLGTMANLQRHRKRACKGSSPLGAHGKRGSFDVSIDSRMSDSGPKGGDRDMVMTAITPLPVDSDGGGGGAQGKDEGLREGDDVMPGIEGSPSNPSVAPSGLEMREGDGMGGSGREEERATSGAPAASKSSYTDVMTI
Sbjct: 1 MRRNLAPARVLYRKMVAAFEGGKSAFGRRRKERDVVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRRNGQEMYHGRRFGDRAWLAFCDLHTDPLRFVEIMTKVGVSYEPSAEEADDGSMAFERLWEVEREKEERQAARRAGHGEKKLPEGVGRRGEGYARFKQMLKEEDRREEEVDIRRRKEEEDVKRRQEEYNATVFAAATHQHQLQLQQQQQQQEVLRQQQQQQPPPPPLHPMPPMSIHGDFMSALPLPGGGGAPAHPPSMPVPPFPLPGMPMGSMAAALGGKPLNFPVPSFPPPPPPPLPSAHPGDPPPLASRYPANFGGGGGGDMVDFAPPRMPAVMREAAYDGKPMGKEGGEGHGGDGGMRLGSLWSALGENGGQAGQSEGSRLGNTASVGFPSVPPFPASAGAGGKAKKVKKKTREKRLQRVLDHFQIPYPASLLLGPAPSKEVAVQGMGEKGMGGQAGQEGGGSPKQQKSIKRRKREESLEGWVEAHLASFPVAARKALLEANPGLKQEEEEETRSTSFPPSLPPSLMMALPPSMGSEGLSVGGGHGEGGSGGDSFAYLAHFPPPAPLGLSSTRGGGSSSTLGLEGSAGAGKDDQEAGMKRKFPCEDCGSVLGTMANLQRHRKRACKGSSPLGAHGKRGSFDVSIDSRMSDSGPKGGDRDMVMTAITPLPVDSDGGGGGAQGKDEGLREGDDVMPGIEGSPSNPSVAPSGLEMREGDGMGGSGREEERATSGAPAASKSSYTDVMTI 988
BLAST of EWM26379.1 vs. NCBI_GenBank
Match: gi|1024071993|gb|KZV65045.1| (hypothetical protein PENSPDRAFT_756837 [Peniophora sp. CONT]) HSP 1 Score: 91.6633 bits (226), Expect = 6.080e-15 Identity = 68/267 (25.47%), Postives = 95/267 (35.58%), Query Frame = 0
Query: 35 VVARYETALEDRKRKEGGGDGREGEKEGAEETMTECAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGEIPHLKPRLQALRRHHMREYTAAEKAASGDAGHGDGPFCSPSSLPTIDYKCHVQFCPCPHQGGLLRCSSPGCFSFFHATCGRR 301
++ R E D ++ GGG RE E GAE+ +CAVC +E N++VFCDGCN+AVH CY V +P G W C+ C L EV P C LC GGA ++ G EW H+ C W+ P + M T ++ +P +K C P +G ++C++ C+ FH TC RR
Sbjct: 99 IMDRLEKEHFDLQKAAGGG--REAEMAGAEDA--QCAVCEDSEGENTNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKC--ALSPEV------------------------------PVSCALCPAEGGAFKQDNRG---------------------------EWVHLLCAIWI--------------PETGVMNDVFMEPITGTDR------------------IPRQRWKLKCGLCDDP-EGACIQCNNRSCYFAFHVTCARR 269
BLAST of EWM26379.1 vs. NCBI_GenBank
Match: gi|313217923|emb|CBY41301.1| (unnamed protein product [Oikopleura dioica] >gi|313236272|emb|CBY11594.1| unnamed protein product [Oikopleura dioica]) HSP 1 Score: 76.6406 bits (187), Expect = 6.035e-11 Identity = 43/158 (27.22%), Postives = 66/158 (41.77%), Query Frame = 0
Query: 70 CAVCHRTEAGGRNSLVFCDGCNMAVHTFCYCVHSLPAGAWHCQVCEAGLECEVGGKAGEKEGGREGGKEGGKGDYVSPLLAPPPKRCMLCATAGGAMRKAKNGSKKRRRPGADGKAMQADAQAPREGGEEEWAHVECCRWLGMIDGRTGE----IPHL 223
C++C T+A + LV+CD CN+AVH CY + ++P G W C +C K K ++ PL+ P +C+LC A GAM++ P+ G E+ WAH+ C + + R E I H+
Sbjct: 32 CSICEITDANDVDPLVYCDKCNVAVHKLCYGIKTIPEGDWFCNIC----------KYWRKRRSKD------------PLVTPRTFKCVLCFGARGAMKEV----------------------YPKRGSEDSWAHILCALFFEEVQFRDPETSSGISHI 145 The following BLAST results are available for this feature:
BLAST of EWM26379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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