EWM26404.1, cds4269 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26404.1
Unique Name	cds4269
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002463.1:166213..166371 -
Alignment location	CM002463.1:166005..166081 -
Alignment location	CM002463.1:165659..165848 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26404.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101553g2.4687.mrna
Gbkey	CDS
End range	.
End range	166371

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:166213..166371 -
CM002463.1	supercontig	CM002463.1:166005..166081 -
CM002463.1	supercontig	CM002463.1:165659..165848 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26404.1 vs. NCBI_GenBank
Match: gi|585108425|gb|EWM26404.1| (hypothetical protein Naga_101553g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 275.018 bits (702), Expect = 2.380e-93
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query:    1 LPTSLPPSLASGGLPYPPTDESLGARGGAHLSLWDRSLRLDGGGDFGGKNGQKGGDGEPAGGGPADRVAGERQSCVYDRSGRACVRRYNEDPGEIRGKEGGREGGREGGKAESRASLWLRFRRHWRCPVKDLPLSLILFRL 141
            LPTSLPPSLASGGLPYPPTDESLGARGGAHLSLWDRSLRLDGGGDFGGKNGQKGGDGEPAGGGPADRVAGERQSCVYDRSGRACVRRYNEDPGEIRGKEGGREGGREGGKAESRASLWLRFRRHWRCPVKDLPLSLILFRL
Sbjct:    1 LPTSLPPSLASGGLPYPPTDESLGARGGAHLSLWDRSLRLDGGGDFGGKNGQKGGDGEPAGGGPADRVAGERQSCVYDRSGRACVRRYNEDPGEIRGKEGGREGGREGGKAESRASLWLRFRRHWRCPVKDLPLSLILFRL 141

The following BLAST results are available for this feature:

BLAST of EWM26404.1 vs. NCBI_GenBank

BLAST of EWM26404.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108425\|gb\|EWM26404.1\|	2.380e-93	100.00	hypothetical protein Naga_101553g2, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4279	rna4279	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications