EWM26428.1, cds4247 (CDS) Nannochloropsis gaditana

Overview
NameEWM26428.1
Unique Namecds4247
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:108340..108412 -
Alignment locationCM002463.1:107991..108121 -
Alignment locationCM002463.1:107723..107797 -
Alignment locationCM002463.1:107464..107565 -
Alignment locationCM002463.1:107170..107272 -
Alignment locationCM002463.1:106733..106848 -
Alignment locationCM002463.1:106489..106552 -
Alignment locationCM002463.1:106208..106306 -
Alignment locationCM002463.1:105993..106048 -
Alignment locationCM002463.1:105681..105773 -
Alignment locationCM002463.1:105475..105542 -
Alignment locationCM002463.1:105286..105362 -
Alignment locationCM002463.1:105001..105124 -
Alignment locationCM002463.1:104787..104885 -
Alignment locationCM002463.1:104529..104607 -
Alignment locationCM002463.1:104216..104311 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26428.1
Productprotein transport protein sec23a
Orig transcript idgnl|cribi|Naga_100241g1.3012.mrna
GeneSEC23
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:108340..108412 -
CM002463.1supercontigCM002463.1:107991..108121 -
CM002463.1supercontigCM002463.1:107723..107797 -
CM002463.1supercontigCM002463.1:107464..107565 -
CM002463.1supercontigCM002463.1:107170..107272 -
CM002463.1supercontigCM002463.1:106733..106848 -
CM002463.1supercontigCM002463.1:106489..106552 -
CM002463.1supercontigCM002463.1:106208..106306 -
CM002463.1supercontigCM002463.1:105993..106048 -
CM002463.1supercontigCM002463.1:105681..105773 -
CM002463.1supercontigCM002463.1:105475..105542 -
CM002463.1supercontigCM002463.1:105286..105362 -
CM002463.1supercontigCM002463.1:105001..105124 -
CM002463.1supercontigCM002463.1:104787..104885 -
CM002463.1supercontigCM002463.1:104529..104607 -
CM002463.1supercontigCM002463.1:104216..104311 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0006886intracellular protein transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0030127COPII vesicle coat
Vocabulary: INTERPRO
TermDefinition
IPR029006ADF-H/Gelsolin-like_dom
IPR007123Gelsolin-like_dom
IPR006896Sec23/24_trunk_dom
IPR012990Sec23_24_beta_S
IPR002035VWF_A
IPR006900Sec23/24_helical_dom
Homology
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|585108468|gb|EWM26428.1| (protein transport protein sec23a [Nannochloropsis gaditana])

HSP 1 Score: 1009.59 bits (2609), Expect = 0.000e+0
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPKDGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKVAPNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQTP 484
            MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPKDGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKVAPNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQTP
Sbjct:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPKDGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKVAPNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQTP 484          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|299470215|emb|CBN79519.1| (Vesicle coat complex COPII, subunit SEC23 [Ectocarpus siliculosus])

HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 329/486 (67.70%), Postives = 386/486 (79.42%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPKDGGH---LQMGFAASLEVLTSREFKVAGAIGPCSSLRKVAPNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            MLF GGPPTVGPG +VGR K E IRSHTDL K  A H+K A K Y  L E+A+   HV+DIFACSLDQ+G++EM+VCVEKTGG MVL D+F QSVFKESL R+F++   +  + GG    LQMGF  SLEVLTSREFKVAGA+GPCSSL K  PNVAET IG+GGT AWS+GGI PA T+AVYFEVTN  + PLP  KRRF+QF+TQYQ A GRFRLR TT  G WH+D  D+GP+ R +DQ+AA VLM RIAV RTE++E   V D++RW+DRSLI+L +KF  Y KD P SF    EF +YPQ+MFHLRRSQFLQLFNSSPDE+SYYR IL RENV +SLVM+QPSLLSYSF  PP P MLDA S+RPD ILLLDTFFHVV+FHGET+ AWR  GYQ+ EEH  F+ LL++PQ DAQ+ M SR PVPR+IVCDQHKS+ARFL++KLNPS+TH+T +   GQA+ TDDVSLRVFMEHLMKL+ Q+
Sbjct:  301 MLFVGGPPTVGPGMMVGRSKDETIRSHTDLQKNNAPHFKVACKFYEGLTEKAMQNCHVVDIFACSLDQIGLLEMRVCVEKTGGQMVLGDSFGQSVFKESLARLFRKPTGEDGQQGGGAALLQMGFGPSLEVLTSREFKVAGAMGPCSSLGKKNPNVAETEIGQGGTYAWSLGGITPATTVAVYFEVTNNQSEPLPQHKRRFLQFVTQYQQAGGRFRLRATTVCGGWHSDPNDLGPLVRGYDQQAAAVLMARIAVHRTETEE---VADIMRWLDRSLIRLCAKFAQYTKDKPESFRLASEFSMYPQYMFHLRRSQFLQLFNSSPDEASYYRGILCRENVASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 783          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|676378321|ref|XP_009032439.1| (hypothetical protein AURANDRAFT_19426 [Aureococcus anophagefferens] >gi|323456932|gb|EGB12798.1| hypothetical protein AURANDRAFT_19426 [Aureococcus anophagefferens])

HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 322/485 (66.39%), Postives = 394/485 (81.24%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIP-KDGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRK-VAPNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            MLF GGP TVGPG VV + ++ED+RSH D+ KG   H KAA K Y  LA+RA A  HV+D FACSLDQVG+ EM+  ++KTGG+ +L D+F+QSVFKESL RVF+R  AD P  + G L MGF A+LE++TSREFK+AGAIGPC+SL+K  +P VA+T IG+GGTNAW++GGIDP  T+AVYFE+TNA N P+P  KRR+ QFITQYQHA+GR+RLR+TT  GAW  D  D  PVARSFDQEAA VLM R+AV RTE++E   V D+LRWVDRSLI+L +KF  YRKDDP+SF  P EF +YPQF+F+LRRSQFLQLFNSSPDE+SYYR +L REN +NSLVMIQP+L+SYSF APPQP MLDA+S+RPD ILLLDTFF+V+VFHGET+AAWR  GYQ+ EEHV+FKNLL  P  DA   M +RFPVPR+I+ DQHKS+ARFL+ KLNPS+TH++ ++  GQ + TDDVSL+VFMEHLMKL+V++
Sbjct:  292 MLFVGGPSTVGPGMVVDKARSEDMRSHQDIVKGNCPHLKAATKFYGGLADRASANGHVVDCFACSLDQVGLHEMRTLIDKTGGVSILGDSFTQSVFKESLRRVFRRHAADAPGPNAGALVMGFGATLEIITSREFKIAGAIGPCASLKKGKSPYVADTEIGQGGTNAWTIGGIDPTTTVAVYFEITNAGNQPMPAHKRRYAQFITQYQHANGRYRLRSTTLCGAWQPDPNDSAPVARSFDQEAAAVLMARVAVHRTETEE---VPDILRWVDRSLIRLCAKFADYRKDDPSSFRLPHEFAVYPQFVFNLRRSQFLQLFNSSPDEASYYRMVLTRENASNSLVMIQPTLMSYSFQAPPQPAMLDASSVRPDVILLLDTFFYVIVFHGETIAAWRDQGYQDHEEHVHFKNLLHQPLEDANAIMDARFPVPRYIIADQHKSEARFLICKLNPSVTHNSTDIHAGQVIPTDDVSLKVFMEHLMKLSVES 773          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|1173952804|gb|OQS00391.1| (hypothetical protein THRCLA_05962 [Thraustotheca clavata])

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 310/489 (63.39%), Postives = 383/489 (78.32%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPK-DGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKV-----APNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            M+F GGP T GPG +V R ++EDIRSHTD+ KG A     AV+HY +LAER VA++HV+DIFACSLDQ G+MEM+VCV KTGG++VLAD+F QSVFKES  R+F R   +  + D  HL M FAASLEVLTSREFKVAGAIGPC++L+K      A N++ET IG GGTN WS+GG+DP  ++A+YF+VTN A + L P K RFIQFIT+YQH+SG FR+R TT  G W  D  D+  + R FDQEAA VLMTRIAV R+E  +E   +D++RW+DRSLI+L S+F  YRKDDP+SF   +EF +YPQFMFHLRRSQFLQ+F  SPDES+YYR  L+RE  TNSLVMIQPSLLSYSF+ PP P +LD++S+R D ILLLD++F VV+FHGET+A+WR   +    EH+NFKNLL++PQ DAQ+ M SRFPVPR++VCDQHKSQ+RFLMAKLNPS +H  G+ G G+ + TDDVSL+VFMEHLMK AVQ+
Sbjct:  382 MMFVGGPATTGPGAIVNRERSEDIRSHTDIQKGNAPLSAKAVEHYTALAERCVASAHVVDIFACSLDQSGVMEMRVCVSKTGGVIVLADSFGQSVFKESFRRMFSRFSEEAAENDQNHLTMAFAASLEVLTSREFKVAGAIGPCAALKKTNNAIPAKNISETEIGIGGTNTWSLGGVDPQTSLAIYFDVTNPATSTLHPGKGRFIQFITRYQHSSGHFRIRVTTICGPWSVDPEDIESLKRGFDQEAAAVLMTRIAVFRSERGDE--TNDIMRWIDRSLIRLGSRFADYRKDDPSSFRLSREFSIYPQFMFHLRRSQFLQVFGYSPDESAYYRHCLMRECTTNSLVMIQPSLLSYSFNGPPAPALLDSSSVRADTILLLDSYFIVVIFHGETIASWRDQKFHEHPEHINFKNLLEAPQADAQLIMDSRFPVPRYVVCDQHKSQSRFLMAKLNPSNSHTQGD-GQGEVIFTDDVSLKVFMEHLMKFAVQS 867          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|1173944396|gb|OQR93138.1| (protein transport Sec23/Sec24-like protein [Achlya hypogyna])

HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 310/489 (63.39%), Postives = 381/489 (77.91%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPK-DGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKV-----APNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            M+F GGP T GPG +V R ++EDIRSHTD+AKG A     A++HY +LAER VA++HV+DIFACSLDQ G+MEM+VCV KTGG++VLAD+F QSVFKES  R+F R   +  + D  HL M FAASLEVLTSREFKV+GAIGP ++L+K      A N++ET IG GGTN WS+G +DP   +A+YF+VTN A + L P K RFIQFIT+YQHASGRFR R TT  G W  D  D+  + R FDQEAA VLMTRIAV R+E  +E   +D++RW+DRSLI+L ++F  YRKDDP+SF   +EF +YPQFMFHLRRSQFLQ+F  SPDES+ YR  L+RE  TNSLVMIQPSLLSYSF+ PP P +LD+TS+R D ILLLD+FF+VVVFHGET+A+WR   +    EH+NFKNLL++PQ DAQ+ M SRFPVPR++VCDQHKSQ+RFLMAKLNPS +H  G+ G G+ + TDDVSL+VFMEHLMK AVQ+
Sbjct:  380 MMFVGGPATTGPGAIVNRERSEDIRSHTDIAKGNAPLSAKAIEHYTALAERCVASAHVVDIFACSLDQSGVMEMRVCVSKTGGVIVLADSFGQSVFKESFRRMFSRFSEEAAENDQNHLTMAFAASLEVLTSREFKVSGAIGPVAALKKTNNAMPAKNISETEIGVGGTNTWSLGALDPQTALAIYFDVTNPATSTLHPGKGRFIQFITRYQHASGRFRTRVTTICGPWATDPEDLESLKRGFDQEAAAVLMTRIAVHRSERGDE--TNDIMRWIDRSLIRLGARFADYRKDDPSSFRLSREFSIYPQFMFHLRRSQFLQVFGYSPDESATYRHCLMRECTTNSLVMIQPSLLSYSFNGPPAPALLDSTSVRADTILLLDSFFYVVVFHGETIASWRDQKFHEHPEHINFKNLLEAPQADAQLIMDSRFPVPRYVVCDQHKSQSRFLMAKLNPSNSHTQGD-GQGEVIFTDDVSLKVFMEHLMKFAVQS 865          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|813177647|ref|XP_012205293.1| (hypothetical protein SPRG_10669 [Saprolegnia parasitica CBS 223.65] >gi|641529820|gb|KDO23972.1| hypothetical protein SPRG_10669 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 309/489 (63.19%), Postives = 380/489 (77.71%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPK-DGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKV-----APNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            M+F GGP T GPG +V R ++EDIRSHTD+ KG A     A++HY +LAER V+ +HV+DIFACSLDQ G+MEM+VCV KTGG++VLAD+F QSVFKES  R+F R   +  + D  HL M FAASLEVLTSREFKV+GAIGPC++L+K      A N++ET IG GGTN WS+G +DP + IA+YF+VTN A + L P K R+IQFIT+YQHASGRFR R TT  G W  D  D+  + R FDQEAA VLMTRIAV R+E  +E   +D++RW+DRSLI+L ++F  YRKDDP+SF   +EF +YPQFMFHLRRSQFLQ+F  SPDES+ YR  L+RE  TNSLVMIQPSLLSYSF+ PP P +LD+ S+R D ILLLD+FF+VVVFHGET+A+WR   +    EH+NFKNLL++PQ DAQ+ M SRFPVPR+IVCDQHKSQ+RFLMAKLNPS +H  G+ G G+ + TDDVSL+VFMEHLMK AVQ+
Sbjct:  378 MMFVGGPATTGPGAIVNRERSEDIRSHTDIQKGNAPLSAKAIEHYTALAERCVSNAHVVDIFACSLDQSGVMEMRVCVAKTGGVIVLADSFGQSVFKESFRRMFSRFSEEAAECDQNHLTMAFAASLEVLTSREFKVSGAIGPCAALKKTNNALPAKNISETEIGVGGTNMWSLGALDPQMAIAIYFDVTNPATSTLHPGKGRYIQFITRYQHASGRFRTRVTTICGPWSVDPEDIESLKRGFDQEAAAVLMTRIAVHRSERGDE--TNDIMRWIDRSLIRLGARFADYRKDDPSSFRLSREFSIYPQFMFHLRRSQFLQVFGYSPDESATYRHCLMRECTTNSLVMIQPSLLSYSFNGPPAPALLDSASVRADTILLLDSFFYVVVFHGETIASWRDQKFHEHAEHINFKNLLEAPQADAQLIMDSRFPVPRYIVCDQHKSQSRFLMAKLNPSNSHTQGD-GQGEVIFTDDVSLKVFMEHLMKFAVQS 863          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|669155172|ref|XP_008613148.1| (hypothetical protein SDRG_09016 [Saprolegnia diclina VS20] >gi|530735266|gb|EQC33508.1| hypothetical protein SDRG_09016 [Saprolegnia diclina VS20])

HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 307/489 (62.78%), Postives = 380/489 (77.71%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPK-DGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKV-----APNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            M+F GGP T GPG +V R ++EDIRSHTD+ KG A     A++HY +LAER V+ +HV+DIFACSLDQ G+MEM+VCV KTGG++VLAD+F QSVFKES  R+F R   +  + D  HL M FA+SLEVLTSREFKV+GAIGPC++L+K      A N++ET IG GGTN WS+G +DP + IA+YF+VTN A + L P K R++QFIT+YQHASGRFR R TT  G W  D  D+  + R FDQEAA VLMTRIAV R+E  +E   +D++RW+DRSLI+L ++F  YRKDDP+SF   +EF +YPQFMFHLRRSQFLQ+F  SPDES+ YR  L+RE  TNSLVMIQPSLLSYSF+ PP P +LD+ S+R D ILLLD+FF+VVVFHGET+A+WR   +    EH+NFKNLL++PQ DAQ+ M SRFPVPR+IVCDQHKSQ+RFLMAKLNPS +H  G+ G G+ + TDDVSL+VFMEHLMK AVQ+
Sbjct:  379 MMFVGGPATTGPGAIVNRERSEDIRSHTDIQKGNAPLSAKAIEHYTALAERCVSNAHVVDIFACSLDQSGVMEMRVCVAKTGGVIVLADSFGQSVFKESFRRMFSRFSDEAAECDQNHLTMAFASSLEVLTSREFKVSGAIGPCAALKKTNNALPAKNISETEIGVGGTNTWSLGALDPQMAIAIYFDVTNPATSTLHPGKGRYLQFITRYQHASGRFRTRVTTICGPWSVDPEDIESLKRGFDQEAAAVLMTRIAVHRSERGDE--TNDIMRWIDRSLIRLGARFADYRKDDPSSFRLSREFSIYPQFMFHLRRSQFLQVFGYSPDESATYRHCLMRECTTNSLVMIQPSLLSYSFNGPPAPALLDSASVRADTILLLDSFFYVVVFHGETIASWRDQKFHEHAEHINFKNLLEAPQADAQLIMDSRFPVPRYIVCDQHKSQSRFLMAKLNPSNSHTQGD-GQGEVIFTDDVSLKVFMEHLMKFAVQS 864          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|695407754|ref|XP_009524464.1| (vesicle coat complex COPII subunit SEC23 [Phytophthora sojae] >gi|348681931|gb|EGZ21747.1| vesicle coat complex COPII subunit SEC23 [Phytophthora sojae])

HSP 1 Score: 640.188 bits (1650), Expect = 0.000e+0
Identity = 310/489 (63.39%), Postives = 375/489 (76.69%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRL---PADIPKDGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRK--VAP-NVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            M+F GGPPTVGPG +V R + EDIRSHTDL K  A   K A+ HY  LA R VA+SHV+DIFACSLDQ G+MEM  CV+KTGG++VLAD+F QSVF+ES  R+F +     AD  KD   L M FAAS+EVLTSREFKVAGAIGPC+ L++   AP NV+E  IG GGTNAWSMGGIDP  T+A+YF+++N    PL P K R+IQ IT+YQHASGR+R R TT  G W  D  D   + R FDQEAA VL+ RIAV R+E  EE    D++RW+DRSLI+L+S+F  YRKDDP+SF    EF ++PQFMFHLRRSQFL +F  SPDESSYYR  L+RE+ TNSLVMIQPSLLSYSF+ PP P +LDA S+R D ILLLD+FF+VVVFHG+T+AAWR   +     H NFKNLL++PQ DAQ+ M SRFPVPR++VCDQHKSQ+RFLMAKLNPS+TH++ + G G+ + TDDVSL+VFMEHLM LAV++
Sbjct:  282 MMFVGGPPTVGPGAIVSRDRKEDIRSHTDLQKDKAPLTKKALVHYNDLAARCVASSHVVDIFACSLDQSGVMEMAACVQKTGGVIVLADSFGQSVFRESFRRMFSKFSDEAADCDKD--QLTMAFAASVEVLTSREFKVAGAIGPCAPLKRQGAAPKNVSEVEIGVGGTNAWSMGGIDPNTTVAIYFDISN--QTPLAPGKARYIQLITRYQHASGRYRTRVTTICGPWTVDPNDTASLGRGFDQEAAAVLLARIAVHRSEQGEEQL--DIMRWIDRSLIRLASRFADYRKDDPSSFRLSPEFAIFPQFMFHLRRSQFLTVFGYSPDESSYYRHCLLRESTTNSLVMIQPSLLSYSFNGPPVPALLDAASVRSDTILLLDSFFYVVVFHGDTIAAWRDQKFHEDPAHENFKNLLEAPQADAQLIMDSRFPVPRYVVCDQHKSQSRFLMAKLNPSVTHNSMD-GQGEVIFTDDVSLKVFMEHLMNLAVKS 763          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|673040953|ref|XP_008874437.1| (hypothetical protein H310_09985 [Aphanomyces invadans] >gi|574470179|gb|ETV97191.1| hypothetical protein H310_09985 [Aphanomyces invadans])

HSP 1 Score: 639.417 bits (1648), Expect = 0.000e+0
Identity = 305/489 (62.37%), Postives = 377/489 (77.10%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPK-DGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKV-----APNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAMLTDDVSLRVFMEHLMKLAVQT 483
            MLF GGP T GPG +V R +TEDIRSHTDL KG A     A++HY  LA+R VAA+HV+D+FACSLDQ G+MEMKVCV KTGG++VLAD+F QSVFKES  R+F R   +  + D  HL M FAASLEVLTSREFKV+GAIGP ++ +K      A N++ET IG GGTN WS+GG+DP   IA+YF+VTN     + P K R+IQ IT+YQH+SG++R R TT  G W  D  D+  + RSFDQEAA VLMTR+AV R+E  +E   +D++RW+DRSLI+L+++F  YRKDDP+SF   +EF +YPQFMFHLRRSQFLQ+F  SPDESS YR  L+RE+ TNSLVMIQPSLLSYSF  PP P +LD++S+R D ILLLD+FF+VVVFHGE +A+WR   Y    +H +FKNLL++PQ DAQ+ M SRFPVPRF+VCDQHKSQ+RFLMAKLNPS TH +G+ G G+ + TDDVSL+VFMEHL+K +VQT
Sbjct:  402 MLFVGGPATTGPGAIVNRERTEDIRSHTDLQKGNAPLSAKAIEHYTGLADRCVAAAHVVDVFACSLDQSGVMEMKVCVAKTGGVIVLADSFGQSVFKESFRRMFSRFSEEAAESDRDHLTMAFAASLEVLTSREFKVSGAIGPVAAQKKTNAAVPAKNISETEIGVGGTNTWSLGGLDPQTAIAIYFDVTN--QGAIAPGKGRYIQLITRYQHSSGKYRTRVTTICGPWTTDPNDVESLKRSFDQEAAAVLMTRLAVFRSERGDE--TNDIMRWIDRSLIRLAARFADYRKDDPSSFRLSREFSIYPQFMFHLRRSQFLQVFGYSPDESSTYRHCLLRESTTNSLVMIQPSLLSYSFQGPPTPALLDSSSVRADTILLLDSFFYVVVFHGEMIASWRDQKYHEHPDHAHFKNLLEAPQADAQLIMDSRFPVPRFVVCDQHKSQSRFLMAKLNPSTTHMSGD-GQGEVIFTDDVSLKVFMEHLIKASVQT 885          
BLAST of EWM26428.1 vs. NCBI_GenBank
Match: gi|219110807|ref|XP_002177155.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411690|gb|EEC51618.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 310/484 (64.05%), Postives = 362/484 (74.79%), Query Frame = 0
Query:    1 MLFAGGPPTVGPGTVVGRPKTEDIRSHTDLAKGTASHYKAAVKHYASLAERAVAASHVIDIFACSLDQVGMMEMKVCVEKTGGLMVLADTFSQSVFKESLLRVFKRLPADIPKDGGHLQMGFAASLEVLTSREFKVAGAIGPCSSLRKVAPNVAETAIGEGGTNAWSMGGIDPAVTIAVYFEVTNAANNPLPPSKRRFIQFITQYQHASGRFRLRTTTYSGAWHNDSVDMGPVARSFDQEAACVLMTRIAVQRTESDEEGTVHDVLRWVDRSLIKLSSKFGSYRKDDPTSFAFPQEFVLYPQFMFHLRRSQFLQLFNSSPDESSYYRTILIRENVTNSLVMIQPSLLSYSFSAPPQPVMLDATSIRPDCILLLDTFFHVVVFHGETVAAWRAAGYQNSEEHVNFKNLLDSPQLDAQMTMTSRFPVPRFIVCDQHKSQARFLMAKLNPSITHHTGEVGMGQAML-TDDVSLRVFMEHLMKLAVQT 483
            MLF  GP T GPG +V R K ED+RSH DLAK     +K A + Y        A  H +D+FACSLDQVG++EM   VE TGGL VL D+F QSVFKESL RVF R P ++P+DGG LQM F ASLEVLTS EFKV+GAIGP +SL K APNV+E  +G+GGTNAW +GG+DP  T+A+YF+V+N    PLP  KRRFIQF+T+YQHA+GR RLR TT  G              SFDQEAA VL  R+AV +TESDE   V DVLRWVDRSLI+L +KF  Y  DD  SF    EF LYPQFMFHLRRSQFLQLFNSSPDE++YYR IL REN TNSLVM+QP+LLSYSF+ PP+  +LD+ S+R D ILLLDTFFHVVVFHGET+AAWR  GY   +EH  F+ LL++PQ DAQ+ M +RFPVPR+IVCDQHKS+ARFLMAKLNPS+TH++   G G A + TDDVSLRVFMEHLMKLAVQT
Sbjct:  293 MLFTSGPCTSGPGAIVSRMKGEDMRSHADLAKNVEPLHKPACEFYNKAPIPTNAPHHAVDVFACSLDQVGLLEMSELVEATGGLTVLGDSFGQSVFKESLRRVFNRFPEEVPQDGGQLQMAFNASLEVLTSSEFKVSGAIGPVTSLHKAAPNVSEIEVGKGGTNAWGLGGVDPNTTVAIYFDVSNPGTTPLPEGKRRFIQFLTKYQHANGRTRLRATTLCG--------------SFDQEAAAVLTARMAVHQTESDE---VADVLRWVDRSLIRLCAKFAEYEPDDLNSFRLSPEFSLYPQFMFHLRRSQFLQLFNSSPDEAAYYRYILSRENTTNSLVMLQPTLLSYSFNGPPEAALLDSESVRADTILLLDTFFHVVVFHGETIAAWREQGYHEQDEHAAFRALLEAPQSDAQLIMDARFPVPRYIVCDQHKSEARFLMAKLNPSVTHNSNLDGSGSAQVNTDDVSLRVFMEHLMKLAVQT 759          
The following BLAST results are available for this feature:
BLAST of EWM26428.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108468|gb|EWM26428.1|0.000e+0100.00protein transport protein sec23a [Nannochloropsis ... [more]
gi|299470215|emb|CBN79519.1|0.000e+067.70Vesicle coat complex COPII, subunit SEC23 [Ectocar... [more]
gi|676378321|ref|XP_009032439.1|0.000e+066.39hypothetical protein AURANDRAFT_19426 [Aureococcus... [more]
gi|1173952804|gb|OQS00391.1|0.000e+063.39hypothetical protein THRCLA_05962 [Thraustotheca c... [more]
gi|1173944396|gb|OQR93138.1|0.000e+063.39protein transport Sec23/Sec24-like protein [Achlya... [more]
gi|813177647|ref|XP_012205293.1|0.000e+063.19hypothetical protein SPRG_10669 [Saprolegnia paras... [more]
gi|669155172|ref|XP_008613148.1|0.000e+062.78hypothetical protein SDRG_09016 [Saprolegnia dicli... [more]
gi|695407754|ref|XP_009524464.1|0.000e+063.39vesicle coat complex COPII subunit SEC23 [Phytopht... [more]
gi|673040953|ref|XP_008874437.1|0.000e+062.37hypothetical protein H310_09985 [Aphanomyces invad... [more]
gi|219110807|ref|XP_002177155.1|0.000e+064.05predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4257rna4257Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications