EWM30351.1, cds419 (CDS) Nannochloropsis gaditana

Overview
NameEWM30351.1
Unique Namecds419
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1041577..1041685 +
Alignment locationCM002455.1:1041761..1042911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30351.1
Productcyclin h
Orig transcript idgnl|cribi|Naga_100003g63.1868.mrna
Genecyc
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1041577..1041685 +
CM002455.1supercontigCM002455.1:1041761..1042911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0070985transcription factor TFIIK complex
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006355regulation of transcription, DNA-templated
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0019901protein kinase binding
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR015429Cyclin_C/H/T/L
IPR027081CyclinH/Ccl1
IPR013763Cyclin-like
IPR006671Cyclin_N
Homology
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|585113010|gb|EWM30351.1| (cyclin h [Nannochloropsis gaditana])

HSP 1 Score: 867.84 bits (2241), Expect = 0.000e+0
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0
Query:    1 MSLPIKAQNTCYEIGMFDWTQGTQFRAWLYRSAEELAALRAKAHHLAKQAIHEGKAVPMPHCYASRLSPDVGKGSSSTTTEGNPSRSPSGHPSMDPTKPKLVSGIKRPRPDGEEETQDGLCLASAKDGQMRELDALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAECDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQEEVPKSPTERKESRIEVWRAAMTRLKKAARWGGKGEGKKRKKSKGGAAGECNGSATDLGKYGDGDKT 419
            MSLPIKAQNTCYEIGMFDWTQGTQFRAWLYRSAEELAALRAKAHHLAKQAIHEGKAVPMPHCYASRLSPDVGKGSSSTTTEGNPSRSPSGHPSMDPTKPKLVSGIKRPRPDGEEETQDGLCLASAKDGQMRELDALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAECDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQEEVPKSPTERKESRIEVWRAAMTRLKKAARWGGKGEGKKRKKSKGGAAGECNGSATDLGKYGDGDKT
Sbjct:    1 MSLPIKAQNTCYEIGMFDWTQGTQFRAWLYRSAEELAALRAKAHHLAKQAIHEGKAVPMPHCYASRLSPDVGKGSSSTTTEGNPSRSPSGHPSMDPTKPKLVSGIKRPRPDGEEETQDGLCLASAKDGQMRELDALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAECDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQEEVPKSPTERKESRIEVWRAAMTRLKKAARWGGKGEGKKRKKSKGGAAGECNGSATDLGKYGDGDKT 419          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|299473359|emb|CBN77757.1| (cyclin H [Ectocarpus siliculosus])

HSP 1 Score: 121.324 bits (303), Expect = 3.302e-27
Identity = 67/175 (38.29%), Postives = 99/175 (56.57%), Query Frame = 0
Query:  136 LAPEDEEALLQYFAYMIQDACGHRS--ESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLV 308
            L  E+E  +  Y+A  IQ+ CG  S  E ++R   VQATA+ +F RF+LSNS+L+ DPK++++ CVFLA K E +   ++ L    G     +I+  E  LLQGL F L  +HPY     L+ G       + +   P+ +  L    +  +D I+ TDLP LH P+R+ALA L+
Sbjct:  113 LTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAIAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLD-DLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDIVVTDLPFLHPPSRLALAALL 286          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|1210517095|dbj|GAX23989.1| (cyclin H [Fistulifera solaris])

HSP 1 Score: 113.235 bits (282), Expect = 1.458e-24
Identity = 85/285 (29.82%), Postives = 140/285 (49.12%), Query Frame = 0
Query:  136 LAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKD----VFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVK---KLGLTPDSLSRLCTAGQETI----------DLILPTDLPLLHAPARIALAVLVTC-AAECDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQE---EVPKSPTERKESRIEVWRAAMTRLKKAARWG-----GKGEGKKRKK 394
            L  ++E  L+ ++A+ + +  G  +  I+R   + ATA  F +RFFLSNS++ +DPKVV++A  FLA KVE   + + +L++    +        II  E  LLQGL F L+ +HPY     L   L      K    L +  +S +    +GQ+ I          D ++ +D+PLL+AP ++ +A L+     + DL   +  YL   F E++        VA++ P ++   E   E+ + P    E  +   +A   +LKK   WG      KGE KK+++
Sbjct:   49 LTADEETTLVNFYAHKLPNLIGPHALRIRRESKITATAALFLRRFFLSNSVMLYDPKVVMVAAAFLASKVEDATVDIRQLEEGTEAMNAPVPTSDIITTEVALLQGLHFDLRCFHPYKAVVALTEDLRTFLKTKVGQALFVRNNSSNSSMISGQDLIPIYERARTLVDHVVLSDIPLLYAPGQVGMAALMLAQQQQNDLQMDLLGYLKVRFPEQN--------VAVLEPVLQHLCEMLSELEQQP----EDDLSTLKAIHKKLKKVRVWGNSTKNNKGESKKKRR 321          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|1210522354|dbj|GAX18757.1| (cyclin H [Fistulifera solaris])

HSP 1 Score: 110.923 bits (276), Expect = 1.335e-23
Identity = 81/279 (29.03%), Postives = 138/279 (49.46%), Query Frame = 0
Query:  136 LAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKD----VFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKV--NHVKKLGLTPDSLSRLCTAGQETI----------DLILPTDLPLLHAPARIALAVLVTC-AAECDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQEEVPKSPTERKESRIEVWRAAMTRLKKAARWG---GKGEGKKRKK 394
            L  ++E  L+ ++A+ + +  G  +  I+R   + ATA  F +RFFLSNS+L +DPKVV++A  FLA KVE   + + +L++    +        II  E  LL+GL F L+ +HPY     L   L       V +     ++ +    +GQ+ I          D  + +D+PLL+AP ++ LA L+     + +L   +  YL   F E++        VA++ P ++   + + +   ++ E  +   +A   +LKK   WG    KGE KK++K
Sbjct:   74 LTADEETTLVHFYAHKLPNLIGPHALRIRRESKITATAALFLRRFFLSNSVLLYDPKVVMVAAAFLASKVEDATVDIRQLEEGTEAMNAPVPTSDIITTEVALLEGLHFDLRCFHPYKAVVALTEDLRTFLKTKVGQALFVRNNNNNSMISGQDLIPIYERARTLVDHAVLSDIPLLYAPGQVGLAALMLAQQQQTELQMDLLGYLKVRFPEQN--------VAVLEPILQHLCDMLSQL-EQQPEDDLSTLKAIHKKLKKVRVWGSKNNKGESKKKRK 343          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|1183337871|gb|ORX66881.1| (cyclin-like protein [Linderina pennispora])

HSP 1 Score: 106.301 bits (264), Expect = 3.386e-22
Identity = 72/242 (29.75%), Postives = 123/242 (50.83%), Query Frame = 0
Query:  132 ELDALAPEDEEALLQYFAYMIQD-ACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEK--YGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAE--CDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQEEVPK-SPTERKESRI 367
            E + L P DE  L+ Y+   I+D A  ++  S      V+ATA+TF KRF+L N + D+ PK +++AC++LA KVE  ++++ +              ++++E  + Q L F L  +HPY P +G    L+   +V+ + +    L +     Q+ ID  + TDL   + PA+IAL  +   A E  CD    V +YL+  F+         + +  + P ++  QEE+ K  P   KE+++
Sbjct:   60 ENNMLTPADELGLINYYLQKIRDYATVYKFNST-----VKATAITFMKRFYLHNVVFDYPPKGIMLACLYLATKVENSFVKIDDFTKPLARTKVTNSDVLDYEFVVTQSLQFDLAVHHPYRPAYGFF--LDMQTYVEDITV----LQKTYELAQKYIDQAVFTDLVFYYQPAQIALGAIKLAAVETRCD----VDQYLTSQFDA--------RALESLYPILDNVQEEIRKYQPVSMKEAQV 278          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|675191621|ref|XP_008904695.1| (hypothetical protein PPTG_10932 [Phytophthora parasitica INRA-310] >gi|566025005|gb|ETI47916.1| hypothetical protein F443_07960 [Phytophthora parasitica P1569] >gi|567962319|gb|ETK87845.1| hypothetical protein L915_07788 [Phytophthora parasitica] >gi|567991047|gb|ETL41264.1| hypothetical protein L916_07718 [Phytophthora parasitica] >gi|568020333|gb|ETL94465.1| hypothetical protein L917_07603 [Phytophthora parasitica] >gi|568050765|gb|ETM47697.1| hypothetical protein L914_07682 [Phytophthora parasitica] >gi|568095490|gb|ETN10258.1| hypothetical protein PPTG_10932 [Phytophthora parasitica INRA-310] >gi|570328685|gb|ETO76633.1| hypothetical protein F444_08005 [Phytophthora parasitica P1976] >gi|570952456|gb|ETP17713.1| hypothetical protein F441_07931 [Phytophthora parasitica CJ01A1] >gi|570986860|gb|ETP45778.1| hypothetical protein F442_07899 [Phytophthora parasitica P10297])

HSP 1 Score: 107.071 bits (266), Expect = 5.426e-22
Identity = 82/291 (28.18%), Postives = 138/291 (47.42%), Query Frame = 0
Query:   22 GTQFRAWLYRSAEELAALRAKAHHLAKQAIHEGKAVPMPHCYASRLSPDVGKGSSSTTTEGNPSRSPSGHPSMDPTKPKLVSGIKRPRPDGEEETQDGLCLASAKDGQMREL----DALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKV-NHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVL 307
             T F  W++ SAEELA +R   H   K+A+              RL  +  +   ++      +RS +G        P+  + ++      +E   D   L  A++    +L    + L PE E  L  ++   IQ++C   ++ ++    V+  A+  FKRF+LSNS+++F PK ++   +++AGKVE +Y+ +  + D     + + II  E  LL+G+ F L  YHP+    G ++        V K  L    L +L       ++ +L TDLPLLH P+ +ALA L
Sbjct:    7 STHFNNWVF-SAEELARVRRLQHVKTKRAL--------------RLEREEAQKPEASAGSSRKARSFAG------LVPRSSTAVRDTFDWNDEVDVDLSALEEAEEKANLQLTPLLEFLNPEQETLLRVFYEEKIQESCS--AQFLRTSDKVKCCAMMLFKRFYLSNSVMEFHPKYLVPTAIYVAGKVEEQYMSVDTVADQLHVDH-KFIIGHEMILLEGVRFQLIMYHPFRTLLGFLDDFRAFAKQVLKKDLPATVLQKLHANSTAMLNDMLLTDLPLLHYPSYLALAAL 273          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|301122267|ref|XP_002908860.1| (cyclin-H, putative [Phytophthora infestans T30-4] >gi|262099622|gb|EEY57674.1| cyclin-H, putative [Phytophthora infestans T30-4])

HSP 1 Score: 106.686 bits (265), Expect = 7.921e-22
Identity = 85/297 (28.62%), Postives = 137/297 (46.13%), Query Frame = 0
Query:   22 GTQFRAWLYRSAEELAALRAKAHHLAKQAIHEGKAVPMPHCYASRLSPDVGKGSSSTTTEGNPSRS-----PSGHPSMDPTKPKLVSGIKRPRPDGEEETQDGLC-LASAKDGQMREL----DALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKV-NHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVL 307
             T F  W++ S EELA +R   H   K+A+              RL  +  +   ++   G  +RS     PS   +M            R   D  +E    L  L  A++    +L    + L PE E  L  ++   IQ++C   ++ ++    V+  A+  FKRF+LSNS+++F PK ++   +++AGKVE +Y+ +  + D     + + II  E  LL+G+ F L  YHP+    G ++        V K  L    L +L       ++ +L TDLPLLH P+ +ALA L
Sbjct:    7 STHFNNWVF-STEELARVRRLQHVKTKRAL--------------RLEREESQKPEASANNGRKARSFAALVPSSSTAM------------RDTFDWNDEVDVDLSGLEEAEEKANLQLTPLLEFLNPEQEALLRAFYEEKIQESCS--AQFLRTSDKVKCCAVLLFKRFYLSNSVMEFHPKFIVPTAIYVAGKVEEQYMSVDTVADQLHVDH-KFIIGHEMVLLEGVRFQLIMYHPFRALLGFLDDFRAFAKQVLKKDLPATVLQKLHAISTAMVNDMLLTDLPLLHYPSYLALAAL 273          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|1214713169|gb|OWZ24074.1| (Cyclin-H [Phytophthora megakarya])

HSP 1 Score: 106.301 bits (264), Expect = 1.179e-21
Identity = 79/262 (30.15%), Postives = 130/262 (49.62%), Query Frame = 0
Query:  133 LDALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPD----SLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAE---------CDLMEP-VAEYLSYC-FEEEDEYDTIMKEVALIRPAVEAAQEEVPKSPTERKESRIEVWRAAMTRLKK 379
            L+ L+PE E  L +++   IQ++C   ++ ++    V+  A+  FKRF+LSNS+++F PK ++   +++AGKVE +Y+ +  + D     + + II  E  LL+G+ F L  YHP+    G ++         K  LT D     L +L       ++ +L TDLPLLH P+ +ALA L     E         C L+   V EY+    F ++   D +   +  I  A+EA + E  KS  E    R +  +    +LK+
Sbjct:  101 LEFLSPEQETLLREFYEEKIQESCS--AQFLRTSDKVKCCAMLLFKRFYLSNSVMEFHPKYLVPTAIYVAGKVEEQYMSVDTVADQLHVDH-KFIIGHEMILLEGVRFQLIMYHPFRTLLGFLDDFRAFT---KQVLTKDLPATVLQKLHANSTALLNDMLLTDLPLLHYPSYLALAALWHVTDEVAASSGEKACGLVSADVLEYVKRSKFSKDQPVDEVSSRLMEITQAIEATKNEKEKSGDEAVLHRAKQVKQIYKKLKQ 356          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|527203134|gb|EPS69696.1| (hypothetical protein M569_05066, partial [Genlisea aurea])

HSP 1 Score: 102.834 bits (255), Expect = 5.860e-21
Identity = 62/185 (33.51%), Postives = 99/185 (53.51%), Query Frame = 0
Query:  135 ALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSEL-KDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAECDLME 318
            AL PE+E+ L  ++ + IQD C    ++ K    +QATAL +FKRF+L  S+++  PK +++ C++ A K E  ++   EL K +  E+  + I+  E  +LQ LGF L  Y PY    G +N +E     +++    D L  +  + +  +D I+ TD PLL  P ++ALA L         ME
Sbjct:   75 ALKPEEEQLLRAFYEFKIQDVC----DAFKFPRKIQATALIYFKRFYLQWSVMEHHPKNIMLTCIYAACKSEENHVSAEELGKGI--EQDHQMILNNEMLVLQSLGFDLIVYAPYRALEGFVNDIEATRESQEV-YQLDKLKNVHESAKLEVDKIMRTDAPLLFPPGQLALAALRRSVEAHKFME 252          
BLAST of EWM30351.1 vs. NCBI_GenBank
Match: gi|635366872|emb|CCI44847.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 103.219 bits (256), Expect = 1.361e-20
Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = 0
Query:  139 EDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVL 307
            E+E+ L++++   +Q++C   ++  +    V+++A+  FKRF+LSNS+ +F PK ++   +++A KVE +YI +  + +     + + +I  E  LL+G+ F L  YHP+ P  G ++ L      K   L  + L  L T     ++  L TD+PLL+ PA++ALA L
Sbjct:  112 EEEKTLVEFYESKVQESC---TQLFRTSEKVKSSAIQLFKRFYLSNSVAEFHPKYLVPTVIYVAAKVEEQYISVETIAEHLKVDH-KHVIGHEMILLEGVRFHLIMYHPFRPLLGFVDDLRLYAKAKGKQLPLELLQILHTKASVVVNEFLLTDVPLLYHPAQLALAAL 276          
The following BLAST results are available for this feature:
BLAST of EWM30351.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113010|gb|EWM30351.1|0.000e+0100.00cyclin h [Nannochloropsis gaditana][more]
gi|299473359|emb|CBN77757.1|3.302e-2738.29cyclin H [Ectocarpus siliculosus][more]
gi|1210517095|dbj|GAX23989.1|1.458e-2429.82cyclin H [Fistulifera solaris][more]
gi|1210522354|dbj|GAX18757.1|1.335e-2329.03cyclin H [Fistulifera solaris][more]
gi|1183337871|gb|ORX66881.1|3.386e-2229.75cyclin-like protein [Linderina pennispora][more]
gi|675191621|ref|XP_008904695.1|5.426e-2228.18hypothetical protein PPTG_10932 [Phytophthora para... [more]
gi|301122267|ref|XP_002908860.1|7.921e-2228.62cyclin-H, putative [Phytophthora infestans T30-4] ... [more]
gi|1214713169|gb|OWZ24074.1|1.179e-2130.15Cyclin-H [Phytophthora megakarya][more]
gi|527203134|gb|EPS69696.1|5.860e-2133.51hypothetical protein M569_05066, partial [Genlisea... [more]
gi|635366872|emb|CCI44847.1|1.361e-2031.95unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna419rna419Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications