EWM26496.1, cds4177 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|585108552|gb|EWM26496.1| (Amino acid transporter, transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 300.442 bits (768), Expect = 3.484e-103 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query: 1 MAFKAPSPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTATAKSTATFSIAQRG 150
MAFKAPSPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTATAKSTATFSIAQRG
Sbjct: 1 MAFKAPSPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTATAKSTATFSIAQRG 150
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|585099526|gb|EWM20142.1| (Amino acid transporter, transmembrane, partial [Nannochloropsis gaditana]) HSP 1 Score: 224.172 bits (570), Expect = 9.942e-72 Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = 0
Query: 7 SPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTA 136
S +YGS+ +L +T T++AGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSAL A
Sbjct: 39 SSFYGSTNAPDILRRTTTYQAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALVVA 168
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|939682833|ref|XP_014299623.1| (PREDICTED: putative sodium-coupled neutral amino acid transporter 10 [Microplitis demolitor]) HSP 1 Score: 61.2326 bits (147), Expect = 3.613e-8 Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0
Query: 34 SSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHA-TPRLAFLPTVLVIVTCLGSAVS 131
+ ++ L +S+ G S+L +PF F QCG L L ++FC L + L HFL++SA V S +F +A HA P FL + +I LG+ ++
Sbjct: 6 THVMTLANSIIGVSVLAMPFCFKQCGIVLAILILVFCSLLSRLACHFLIKSA---------VMSRRRNFEFLAFHAFGPMGKFLVELFIIGFLLGTCIA 95
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|551589213|ref|XP_005779171.1| (hypothetical protein EMIHUDRAFT_457313 [Emiliania huxleyi CCMP1516] >gi|485631640|gb|EOD26742.1| hypothetical protein EMIHUDRAFT_457313 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 59.6918 bits (143), Expect = 1.069e-7 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0
Query: 29 TGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARL 87
TG++ SS+L L +++ G+ +L +P AF+ CGWA+G+L ++ CGLF+ LG H L +A L
Sbjct: 69 TGSVRSSVLNLTNTIIGAGMLGLPAAFAACGWAVGSLLLLACGLFSGLGLHLLSAAADL 127 The following BLAST results are available for this feature:
BLAST of EWM26496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|