EWM26496.1, cds4177 (CDS) Nannochloropsis gaditana

Overview
NameEWM26496.1
Unique Namecds4177
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1058935..1059333 -
Alignment locationCM002462.1:1058808..1058861 -

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Properties
Property NameValue
Protein idEWM26496.1
ProductAmino acid transporter, transmembrane
Orig transcript idgnl|cribi|Naga_101128g1.8506.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1058935..1059333 -
CM002462.1supercontigCM002462.1:1058808..1058861 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Homology
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|585108552|gb|EWM26496.1| (Amino acid transporter, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 300.442 bits (768), Expect = 3.484e-103
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query:    1 MAFKAPSPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTATAKSTATFSIAQRG 150
            MAFKAPSPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTATAKSTATFSIAQRG
Sbjct:    1 MAFKAPSPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTATAKSTATFSIAQRG 150          
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|585099526|gb|EWM20142.1| (Amino acid transporter, transmembrane, partial [Nannochloropsis gaditana])

HSP 1 Score: 224.172 bits (570), Expect = 9.942e-72
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = 0
Query:    7 SPYYGSSKDHYVLHQTHTHEAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALKTA 136
            S +YGS+    +L +T T++AGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSAL  A
Sbjct:   39 SSFYGSTNAPDILRRTTTYQAGTGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHATPRLAFLPTVLVIVTCLGSAVSALVVA 168          
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|939682833|ref|XP_014299623.1| (PREDICTED: putative sodium-coupled neutral amino acid transporter 10 [Microplitis demolitor])

HSP 1 Score: 61.2326 bits (147), Expect = 3.613e-8
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   34 SSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARLVTSMYPSVNSDALSFADIASHA-TPRLAFLPTVLVIVTCLGSAVS 131
            + ++ L +S+ G S+L +PF F QCG  L  L ++FC L + L  HFL++SA         V S   +F  +A HA  P   FL  + +I   LG+ ++
Sbjct:    6 THVMTLANSIIGVSVLAMPFCFKQCGIVLAILILVFCSLLSRLACHFLIKSA---------VMSRRRNFEFLAFHAFGPMGKFLVELFIIGFLLGTCIA 95          
BLAST of EWM26496.1 vs. NCBI_GenBank
Match: gi|551589213|ref|XP_005779171.1| (hypothetical protein EMIHUDRAFT_457313 [Emiliania huxleyi CCMP1516] >gi|485631640|gb|EOD26742.1| hypothetical protein EMIHUDRAFT_457313 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 59.6918 bits (143), Expect = 1.069e-7
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   29 TGTLTSSILILISSVFGSSILVVPFAFSQCGWALGTLCMIFCGLFTELGAHFLLESARL 87
            TG++ SS+L L +++ G+ +L +P AF+ CGWA+G+L ++ CGLF+ LG H L  +A L
Sbjct:   69 TGSVRSSVLNLTNTIIGAGMLGLPAAFAACGWAVGSLLLLACGLFSGLGLHLLSAAADL 127          
The following BLAST results are available for this feature:
BLAST of EWM26496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585108552|gb|EWM26496.1|3.484e-103100.00Amino acid transporter, transmembrane [Nannochloro... [more]
gi|585099526|gb|EWM20142.1|9.942e-7288.46Amino acid transporter, transmembrane, partial [Na... [more]
gi|939682833|ref|XP_014299623.1|3.613e-834.34PREDICTED: putative sodium-coupled neutral amino a... [more]
gi|551589213|ref|XP_005779171.1|1.069e-745.76hypothetical protein EMIHUDRAFT_457313 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4187rna4187Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications