EWM26501.1, cds4172 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26501.1
Unique Name	cds4172
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:1051618..1052184 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26501.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101836g1.363.mrna
Gbkey	CDS
End range	.
End range	1052184

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1051618..1052184 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR020846	MFS_dom

Homology

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BLAST of EWM26501.1 vs. NCBI_GenBank
Match: gi|585108562|gb|EWM26501.1| (hypothetical protein Naga_101836g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 381.333 bits (978), Expect = 5.557e-134
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0

Query:    1 NGTVPNTQPPPSLPPSPPPLPFPQALGTHTPAEAQAIFTLSVAAGSMSSAGFATATQDLADKYIGMYVGEGGREGSLLLLTWNLACTSERDRVRLVEQDYANWKNGLSMQSSSFLIPNASLSTLSRPVSTYGATSALSVIVGSLGTFGTGMILDYSHEWPWVFGIAAGVYATGALAFAQLYKAEKVFD 188
            NGTVPNTQPPPSLPPSPPPLPFPQALGTHTPAEAQAIFTLSVAAGSMSSAGFATATQDLADKYIGMYVGEGGREGSLLLLTWNLACTSERDRVRLVEQDYANWKNGLSMQSSSFLIPNASLSTLSRPVSTYGATSALSVIVGSLGTFGTGMILDYSHEWPWVFGIAAGVYATGALAFAQLYKAEKVFD
Sbjct:    1 NGTVPNTQPPPSLPPSPPPLPFPQALGTHTPAEAQAIFTLSVAAGSMSSAGFATATQDLADKYIGMYVGEGGREGSLLLLTWNLACTSERDRVRLVEQDYANWKNGLSMQSSSFLIPNASLSTLSRPVSTYGATSALSVIVGSLGTFGTGMILDYSHEWPWVFGIAAGVYATGALAFAQLYKAEKVFD 188

The following BLAST results are available for this feature:

BLAST of EWM26501.1 vs. NCBI_GenBank

BLAST of EWM26501.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108562\|gb\|EWM26501.1\|	5.557e-134	100.00	hypothetical protein Naga_101836g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4182	rna4182	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications