EWM26518.1, cds4156 (CDS) Nannochloropsis gaditana

Overview
NameEWM26518.1
Unique Namecds4156
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1025615..1025679 +
Alignment locationCM002462.1:1025867..1025910 +
Alignment locationCM002462.1:1026461..1027662 +
Alignment locationCM002462.1:1027804..1028397 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26518.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100398g5.1307.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1025615..1025679 +
CM002462.1supercontigCM002462.1:1025867..1025910 +
CM002462.1supercontigCM002462.1:1026461..1027662 +
CM002462.1supercontigCM002462.1:1027804..1028397 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR006447Myb_dom_plants
IPR009057Homeodomain-like
Homology
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|585108593|gb|EWM26518.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 1271.91 bits (3290), Expect = 0.000e+0
Identity = 634/634 (100.00%), Postives = 634/634 (100.00%), Query Frame = 0 
Query:    1 MDTWNDSTLGYLDVLRDVYSSLSFPGLPATECSEDAVMAATSKRQQSGKEERKMGRDGNEGEYEEMQYLSAQVEEESREGVGGSLEQGREESCEGVKEDGAEEGPEGEHRRQYRNRKYRRLAPNLPVVSIPVSTSNSSLSSEVGRSRAHSLSLAEEGEEENAAPAESTMRVVSTPGSLGGLGKGKHFLFKQPKAANAHASQARARNPKRAASPASSPRAGLTNASKGGSGGASGGGSGAGAHTRNRRRAALKAEAAMHKAHSGREGVGEGGGSPGPGGQGGRGSEDEGEDGKEDGGEEEEDSGEIDESLMSLRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDGLLPPLFAHGHRRLPPALGGGNRQHHLQQVQALTGQLLQTQLDLQVQVQHYITSQITIQSELIKDTVSSSMHVLGRGDGLPRQEEGKEDGKRGTAQGGEREGEGEALPPLIVDGEEQEERKHLAFPSSPLPCGGVGGGGRTPTSTPMYMKRGGEGGRKGGGEGGGGLEALAAEARILEAASKAKRQQQQDTLSSLEDEEEEEEEQGGRGGEIWSGCEERLPSRPRTVTLAL 634
            MDTWNDSTLGYLDVLRDVYSSLSFPGLPATECSEDAVMAATSKRQQSGKEERKMGRDGNEGEYEEMQYLSAQVEEESREGVGGSLEQGREESCEGVKEDGAEEGPEGEHRRQYRNRKYRRLAPNLPVVSIPVSTSNSSLSSEVGRSRAHSLSLAEEGEEENAAPAESTMRVVSTPGSLGGLGKGKHFLFKQPKAANAHASQARARNPKRAASPASSPRAGLTNASKGGSGGASGGGSGAGAHTRNRRRAALKAEAAMHKAHSGREGVGEGGGSPGPGGQGGRGSEDEGEDGKEDGGEEEEDSGEIDESLMSLRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDGLLPPLFAHGHRRLPPALGGGNRQHHLQQVQALTGQLLQTQLDLQVQVQHYITSQITIQSELIKDTVSSSMHVLGRGDGLPRQEEGKEDGKRGTAQGGEREGEGEALPPLIVDGEEQEERKHLAFPSSPLPCGGVGGGGRTPTSTPMYMKRGGEGGRKGGGEGGGGLEALAAEARILEAASKAKRQQQQDTLSSLEDEEEEEEEQGGRGGEIWSGCEERLPSRPRTVTLAL
Sbjct:    1 MDTWNDSTLGYLDVLRDVYSSLSFPGLPATECSEDAVMAATSKRQQSGKEERKMGRDGNEGEYEEMQYLSAQVEEESREGVGGSLEQGREESCEGVKEDGAEEGPEGEHRRQYRNRKYRRLAPNLPVVSIPVSTSNSSLSSEVGRSRAHSLSLAEEGEEENAAPAESTMRVVSTPGSLGGLGKGKHFLFKQPKAANAHASQARARNPKRAASPASSPRAGLTNASKGGSGGASGGGSGAGAHTRNRRRAALKAEAAMHKAHSGREGVGEGGGSPGPGGQGGRGSEDEGEDGKEDGGEEEEDSGEIDESLMSLRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDGLLPPLFAHGHRRLPPALGGGNRQHHLQQVQALTGQLLQTQLDLQVQVQHYITSQITIQSELIKDTVSSSMHVLGRGDGLPRQEEGKEDGKRGTAQGGEREGEGEALPPLIVDGEEQEERKHLAFPSSPLPCGGVGGGGRTPTSTPMYMKRGGEGGRKGGGEGGGGLEALAAEARILEAASKAKRQQQQDTLSSLEDEEEEEEEQGGRGGEIWSGCEERLPSRPRTVTLAL 634
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|298706342|emb|CBJ29351.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.5969 bits (244), Expect = 1.098e-17
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:  316 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct:  139 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 199
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|585109841|gb|EWM27574.1| (two-component response regulator arr12 [Nannochloropsis gaditana])

HSP 1 Score: 85.8853 bits (211), Expect = 5.007e-14
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 0 
Query:  312 LRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFAS-------FCARRE 392
              +P     DFV A+F +GL+C+SPK +M++M  T  LT +HIKSHLQKYRLH +R++EEF++++    + PF +        CA+ E
Sbjct:   58 FVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFG---KNPFVAGAAGTGLVCAKGE 142
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|1072236684|gb|OEU21412.1| (hypothetical protein FRACYDRAFT_235035 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.559 bits (179), Expect = 6.075e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0 
Query:  312 LRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRG 382
              +P     DFV A+F +GL+ SSP  +++ M   + +TTE IKSHLQKYRLH  +SK+EF+  Y   +R 
Sbjct:  289 FTWPEDLHRDFVSAIFDVGLKHSSPATILEHMSKHEQITTERIKSHLQKYRLHRVKSKKEFISSYEASLRN 359
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|675199785|ref|XP_008908777.1| (hypothetical protein PPTG_14034 [Phytophthora parasitica INRA-310] >gi|568091451|gb|ETN06275.1| hypothetical protein PPTG_14034 [Phytophthora parasitica INRA-310])

HSP 1 Score: 72.7886 bits (177), Expect = 9.199e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  322 FVGAVFKLGLQCSSPKVLMDLMPM---TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            FV A+F +GL+ +SPK L+ LM        LTTEH+KSHLQKYRL+ +RS+ EF+EYY+
Sbjct:  116 FVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYD 174
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|570979315|gb|ETP40275.1| (hypothetical protein F442_12363 [Phytophthora parasitica P10297])

HSP 1 Score: 72.7886 bits (177), Expect = 9.692e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  322 FVGAVFKLGLQCSSPKVLMDLMPM---TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            FV A+F +GL+ +SPK L+ LM        LTTEH+KSHLQKYRL+ +RS+ EF+EYY+
Sbjct:  116 FVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYD 174
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|570323113|gb|ETO71061.1| (hypothetical protein F444_12543 [Phytophthora parasitica P1976])

HSP 1 Score: 72.7886 bits (177), Expect = 9.722e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  322 FVGAVFKLGLQCSSPKVLMDLMPM---TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            FV A+F +GL+ +SPK L+ LM        LTTEH+KSHLQKYRL+ +RS+ EF+EYY+
Sbjct:  116 FVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYD 174
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|568014908|gb|ETL89085.1| (hypothetical protein L917_11926 [Phytophthora parasitica])

HSP 1 Score: 72.7886 bits (177), Expect = 9.722e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  322 FVGAVFKLGLQCSSPKVLMDLMPM---TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            FV A+F +GL+ +SPK L+ LM        LTTEH+KSHLQKYRL+ +RS+ EF+EYY+
Sbjct:  116 FVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYD 174
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|566019532|gb|ETI42443.1| (hypothetical protein F443_12441 [Phytophthora parasitica P1569] >gi|567956845|gb|ETK82461.1| hypothetical protein L915_12166 [Phytophthora parasitica] >gi|567985505|gb|ETL35845.1| hypothetical protein L916_12091 [Phytophthora parasitica] >gi|568045184|gb|ETM42340.1| hypothetical protein L914_11999 [Phytophthora parasitica] >gi|570946900|gb|ETP12157.1| hypothetical protein F441_12427 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 72.7886 bits (177), Expect = 1.007e-9
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  322 FVGAVFKLGLQCSSPKVLMDLMPM---TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            FV A+F +GL+ +SPK L+ LM        LTTEH+KSHLQKYRL+ +RS+ EF+EYY+
Sbjct:  116 FVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYD 174
[Close]
BLAST of EWM26518.1 vs. NCBI_GenBank
Match: gi|695431652|ref|XP_009530738.1| (hypothetical protein PHYSODRAFT_316642 [Phytophthora sojae] >gi|348673490|gb|EGZ13309.1| hypothetical protein PHYSODRAFT_316642 [Phytophthora sojae])

HSP 1 Score: 72.4034 bits (176), Expect = 1.126e-9
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  322 FVGAVFKLGLQCSSPKVLMDLMPM---TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377
            FV A+F +GL+ +SPK L+ LM        LTTEH+KSHLQKYRL+ +RS+ EF+EYY+
Sbjct:  113 FVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYD 171
The following BLAST results are available for this feature:
BLAST of EWM26518.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108593|gb|EWM26518.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|298706342|emb|CBJ29351.1|1.098e-1766.13conserved unknown protein [Ectocarpus siliculosus][more]
gi|585109841|gb|EWM27574.1|5.007e-1443.18two-component response regulator arr12 [Nannochlor... [more]
gi|1072236684|gb|OEU21412.1|6.075e-1045.07hypothetical protein FRACYDRAFT_235035 [Fragilario... [more]
gi|675199785|ref|XP_008908777.1|9.199e-1055.93hypothetical protein PPTG_14034 [Phytophthora para... [more]
gi|570979315|gb|ETP40275.1|9.692e-1055.93hypothetical protein F442_12363 [Phytophthora para... [more]
gi|570323113|gb|ETO71061.1|9.722e-1055.93hypothetical protein F444_12543 [Phytophthora para... [more]
gi|568014908|gb|ETL89085.1|9.722e-1055.93hypothetical protein L917_11926 [Phytophthora para... [more]
gi|566019532|gb|ETI42443.1|1.007e-955.93hypothetical protein F443_12441 [Phytophthora para... [more]
gi|695431652|ref|XP_009530738.1|1.126e-955.93hypothetical protein PHYSODRAFT_316642 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4166rna4166Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications