EWM26715.1, cds4088 (CDS) Nannochloropsis gaditana

Overview
NameEWM26715.1
Unique Namecds4088
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:848448..848693 +
Alignment locationCM002462.1:848830..848885 +
Alignment locationCM002462.1:849075..849168 +
Alignment locationCM002462.1:849344..849648 +
Alignment locationCM002462.1:849841..850204 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26715.1
Productnuclear receptor coactivator 7
Orig transcript idgnl|cribi|Naga_100001g14.8226.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:848448..848693 +
CM002462.1supercontigCM002462.1:848830..848885 +
CM002462.1supercontigCM002462.1:849075..849168 +
CM002462.1supercontigCM002462.1:849344..849648 +
CM002462.1supercontigCM002462.1:849841..850204 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006571TLDc_dom
Homology
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|585108803|gb|EWM26715.1| (nuclear receptor coactivator 7 [Nannochloropsis gaditana])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query:    1 MDRRRNGGGEMNFRPEQYQTDEHADGQMRIPPLPSCANASPARHLSISSVSPRTTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSVSPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWALEHPMICPSTLHPSSSSAFTHSSSTSSSLSPTVARHRNSRSLGSDQEIFSLVSPHKSVYEIFESDCGGRERYQHGKEC 354
            MDRRRNGGGEMNFRPEQYQTDEHADGQMRIPPLPSCANASPARHLSISSVSPRTTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSVSPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWALEHPMICPSTLHPSSSSAFTHSSSTSSSLSPTVARHRNSRSLGSDQEIFSLVSPHKSVYEIFESDCGGRERYQHGKEC
Sbjct:    1 MDRRRNGGGEMNFRPEQYQTDEHADGQMRIPPLPSCANASPARHLSISSVSPRTTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSVSPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWALEHPMICPSTLHPSSSSAFTHSSSTSSSLSPTVARHRNSRSLGSDQEIFSLVSPHKSVYEIFESDCGGRERYQHGKEC 354          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|676386389|ref|XP_009036473.1| (hypothetical protein AURANDRAFT_25623 [Aureococcus anophagefferens] >gi|323452586|gb|EGB08459.1| hypothetical protein AURANDRAFT_25623 [Aureococcus anophagefferens])

HSP 1 Score: 112.849 bits (281), Expect = 1.900e-25
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 0
Query:   72 SEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSVSPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            S+IL    V  L+  LP   +GY+W   +SL + G++  TFY +V+  S T++V  +   E+ GG+T   W       G  YYGTG+SFL+K  P     G  +  S+  I +   +  D   P            +  FPWT  N Y+M+ +E+S+ MGGGGG FG F+ D+F  GSSG SET+ N PLA    F++++FECW  
Sbjct:   52 SDILTPAHVAALEPSLPATLRGYNWRQLYSLQQHGANAGTFYARVQFESRTLVVAETSAGEILGGYTNAVWR-----PGAEYYGTGQSFLFK--PRRTPDGRRIWRSRGHILDIIPDPPDDDGP-----------RVSCFPWTGANNYFMMCSESSIAMGGGGGSFGFFLDDDFSRGSSGPSETYGNPPLAASSEFDVVNFECWGF 239          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|1199365947|ref|XP_021201346.1| (TLD domain-containing protein 2 isoform X16 [Helicoverpa armigera])

HSP 1 Score: 111.694 bits (278), Expect = 1.959e-25
Identity = 62/207 (29.95%), Postives = 112/207 (54.11%), Query Frame = 0
Query:   72 SEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            SE+   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+   A+H +     +YGTGES L+  + S      +   S+  I   ++ ++D  +  ++E  +  +   +++ WT +N Y++  + +++ +G G G+FGL++  +   G +   +T+ N PL   + F +   ECW  
Sbjct:   29 SEVFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC--ALHPSEH---FYGTGESLLFSFQCSGEE---ARRQSQANIDAPKDHDKDDNKEQKDEPPAPVKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTF 227          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|1199365943|ref|XP_021201187.1| (TLD domain-containing protein 2 isoform X14 [Helicoverpa armigera])

HSP 1 Score: 112.849 bits (281), Expect = 3.100e-25
Identity = 69/243 (28.40%), Postives = 123/243 (50.62%), Query Frame = 0
Query:   36 CANASPARHLSISSVSPRTTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            C   S +  L  +  S   +  +  S P L      SE+   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+   A+H +     +YGTGES L+  + S      +   S+  I   ++ ++D  +  ++E  +  +   +++ WT +N Y++  + +++ +G G G+FGL++  +   G +   +T+ N PL   + F +   ECW  
Sbjct:   57 CEVLSMSDELRRALYSSGASIDMEFSPPDLIGT---SEVFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC--ALHPSEH---FYGTGESLLFSFQCSGEE---ARRQSQANIDAPKDHDKDDNKEQKDEPPAPVKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTF 288          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|943954910|ref|XP_014360415.1| (PREDICTED: TLD domain-containing protein 2 isoform X13 [Papilio machaon] >gi|930673172|gb|KPJ13720.1| hypothetical protein RR48_10904 [Papilio machaon])

HSP 1 Score: 112.079 bits (279), Expect = 3.120e-25
Identity = 64/210 (30.48%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   72 SEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLY---KVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            SEI   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+             +YGTGES L+   +VR   R H      + E I + + ++E +K+  +E++ +  +   +++ WT +N Y++  + +++ +G G G+FG+++  +   G +    T+ N PL   + F +   ECW  
Sbjct:   59 SEIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC-----ALRPSEHFYGTGESLLFSFQRVREETRRHSHP---APEEIKDKDPKDE-VKKDEKEDQVAPAKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGIWLDGDLYLGRTQRCTTYGNEPLTTREDFIVKIMECWTF 259          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|943954908|ref|XP_014360414.1| (PREDICTED: TLD domain-containing protein 2 isoform X12 [Papilio machaon])

HSP 1 Score: 112.464 bits (280), Expect = 3.546e-25
Identity = 64/210 (30.48%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   72 SEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLY---KVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            SEI   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+             +YGTGES L+   +VR   R H      + E I + + ++E +K+  +E++ +  +   +++ WT +N Y++  + +++ +G G G+FG+++  +   G +    T+ N PL   + F +   ECW  
Sbjct:   81 SEIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC-----ALRPSEHFYGTGESLLFSFQRVREETRRHSHP---APEEIKDKDPKDE-VKKDEKEDQVAPAKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGIWLDGDLYLGRTQRCTTYGNEPLTTREDFIVKIMECWTF 281          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|1199365945|ref|XP_021201260.1| (TLD domain-containing protein 2 isoform X15 [Helicoverpa armigera])

HSP 1 Score: 112.079 bits (279), Expect = 3.631e-25
Identity = 62/207 (29.95%), Postives = 112/207 (54.11%), Query Frame = 0
Query:   72 SEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            SE+   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+   A+H +     +YGTGES L+  + S      +   S+  I   ++ ++D  +  ++E  +  +   +++ WT +N Y++  + +++ +G G G+FGL++  +   G +   +T+ N PL   + F +   ECW  
Sbjct:   59 SEVFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC--ALHPSEH---FYGTGESLLFSFQCSGEE---ARRQSQANIDAPKDHDKDDNKEQKDEPPAPVKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTF 257          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|910327040|ref|XP_013166685.1| (PREDICTED: oxidation resistance protein 1 isoform X14 [Papilio xuthus])

HSP 1 Score: 117.472 bits (293), Expect = 4.170e-25
Identity = 69/228 (30.26%), Postives = 121/228 (53.07%), Query Frame = 0
Query:   54 TTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLY---KVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
             +  +  S P L      SEI   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+   A+  +     +YGTGES L+   +VR   R H      + E I + + ++E +K+  +EE+++  +   +++ WT +N Y++  + +++ +G G G+FG+++  +   G +    T+ N PL   + F +   ECW  
Sbjct:  989 ASVDMEFSPPDLIG---VSEIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC--ALRPSEH---FYGTGESLLFSFQRVREETRRHSHP---APEEIKDKDPKDE-VKKDEKEEQAAPAKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGIWLDGDLYLGRTQRCTTYGNEPLTTREDFIVKIMECWTF 1204          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|910327018|ref|XP_013166674.1| (PREDICTED: oxidation resistance protein 1 isoform X4 [Papilio xuthus])

HSP 1 Score: 117.087 bits (292), Expect = 4.374e-25
Identity = 69/228 (30.26%), Postives = 121/228 (53.07%), Query Frame = 0
Query:   54 TTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLY---KVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
             +  +  S P L      SEI   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+   A+  +     +YGTGES L+   +VR   R H      + E I + + ++E +K+  +EE+++  +   +++ WT +N Y++  + +++ +G G G+FG+++  +   G +    T+ N PL   + F +   ECW  
Sbjct:  992 ASVDMEFSPPDLIG---VSEIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC--ALRPSEH---FYGTGESLLFSFQRVREETRRHSHP---APEEIKDKDPKDE-VKKDEKEEQAAPAKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGIWLDGDLYLGRTQRCTTYGNEPLTTREDFIVKIMECWTF 1207          
BLAST of EWM26715.1 vs. NCBI_GenBank
Match: gi|910327028|ref|XP_013166679.1| (PREDICTED: oxidation resistance protein 1 isoform X8 [Papilio xuthus])

HSP 1 Score: 117.087 bits (292), Expect = 4.623e-25
Identity = 66/210 (31.43%), Postives = 116/210 (55.24%), Query Frame = 0
Query:   72 SEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSV-SPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLY---KVRPSHRSHGSSLSISKEGIFNAEEEEEDLKRPGEEEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWAL 277
            SEI   +  E+L S+LP   QGY W+L FS  + G S  + YR+++ V SP +LVI+  +N VFG  T+   A+  +     +YGTGES L+   +VR   R H      + E I + + ++E +K+  +EE+++  +   +++ WT +N Y++  + +++ +G G G+FG+++  +   G +    T+ N PL   + F +   ECW  
Sbjct:  896 SEIFTMEHREKLCSVLPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGALTSC--ALRPSEH---FYGTGESLLFSFQRVREETRRHSHP---APEEIKDKDPKDE-VKKDEKEEQAAPAKTKFKYWGWTGDNMYFIRGSNDNISIGAGDGKFGIWLDGDLYLGRTQRCTTYGNEPLTTREDFIVKIMECWTF 1096          
The following BLAST results are available for this feature:
BLAST of EWM26715.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108803|gb|EWM26715.1|0.000e+0100.00nuclear receptor coactivator 7 [Nannochloropsis ga... [more]
gi|676386389|ref|XP_009036473.1|1.900e-2537.38hypothetical protein AURANDRAFT_25623 [Aureococcus... [more]
gi|1199365947|ref|XP_021201346.1|1.959e-2529.95TLD domain-containing protein 2 isoform X16 [Helic... [more]
gi|1199365943|ref|XP_021201187.1|3.100e-2528.40TLD domain-containing protein 2 isoform X14 [Helic... [more]
gi|943954910|ref|XP_014360415.1|3.120e-2530.48PREDICTED: TLD domain-containing protein 2 isoform... [more]
gi|943954908|ref|XP_014360414.1|3.546e-2530.48PREDICTED: TLD domain-containing protein 2 isoform... [more]
gi|1199365945|ref|XP_021201260.1|3.631e-2529.95TLD domain-containing protein 2 isoform X15 [Helic... [more]
gi|910327040|ref|XP_013166685.1|4.170e-2530.26PREDICTED: oxidation resistance protein 1 isoform ... [more]
gi|910327018|ref|XP_013166674.1|4.374e-2530.26PREDICTED: oxidation resistance protein 1 isoform ... [more]
gi|910327028|ref|XP_013166679.1|4.623e-2531.43PREDICTED: oxidation resistance protein 1 isoform ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4098rna4098Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications