EWM26627.1, cds4060 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26627.1
Unique Name	cds4060
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:779190..779313 +
Alignment location	CM002462.1:779547..779837 +
Alignment location	CM002462.1:781095..781241 +
Alignment location	CM002462.1:781402..781949 +
Alignment location	CM002462.1:782604..782678 +
Alignment location	CM002462.1:783168..783344 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26627.1
Product	double-strand-break repair protein rad21
Orig transcript id	gnl\|cribi\|Naga_100001g43.8138.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:779190..779313 +
CM002462.1	supercontig	CM002462.1:779547..779837 +
CM002462.1	supercontig	CM002462.1:781095..781241 +
CM002462.1	supercontig	CM002462.1:781402..781949 +
CM002462.1	supercontig	CM002462.1:782604..782678 +
CM002462.1	supercontig	CM002462.1:783168..783344 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress
GO:0007049	cell cycle
GO:0006259	DNA metabolic process
GO:0016043	cellular component organization

Vocabulary: **Molecular Function**
Term	Definition
GO:0003682	chromatin binding
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000228	nuclear chromosome

Vocabulary: **INTERPRO**
Term	Definition
IPR006909	Rad21/Rec8_C_eu
IPR023093	Rad21/Rec8_C
IPR006910	Rad21_Rec8_N

Homology

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|585108715|gb|EWM26627.1| (double-strand-break repair protein rad21 [Nannochloropsis gaditana])

HSP 1 Score: 929.858 bits (2402), Expect = 0.000e+0
Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPDALSQDIFPTSVQPLTPHISCAPSTTVGAVPGNGSCVRLRTTRKLPGREGGRQEGAGSGRVQKRRREEKEGCECEGRREEGGGGGAGDTEDGFRLDDQDNGYSDLEMHFEGHAFQDPTSAEEGMEDGHGEGDEVEAEEWGGEEEEEEREEGEFTRTNAWGSPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRNARRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPGEGPKREAELTRASAPFACLPQSGEGFKTTKPRKGPKNESSKGDLVIQQEVGLFRNLKVNNFRSSDLAINPVLVCSVTQDAGRFLLYQSYPE 453
            MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPDALSQDIFPTSVQPLTPHISCAPSTTVGAVPGNGSCVRLRTTRKLPGREGGRQEGAGSGRVQKRRREEKEGCECEGRREEGGGGGAGDTEDGFRLDDQDNGYSDLEMHFEGHAFQDPTSAEEGMEDGHGEGDEVEAEEWGGEEEEEEREEGEFTRTNAWGSPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRNARRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPGEGPKREAELTRASAPFACLPQSGEGFKTTKPRKGPKNESSKGDLVIQQEVGLFRNLKVNNFRSSDLAINPVLVCSVTQDAGRFLLYQSYPE
Sbjct:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPDALSQDIFPTSVQPLTPHISCAPSTTVGAVPGNGSCVRLRTTRKLPGREGGRQEGAGSGRVQKRRREEKEGCECEGRREEGGGGGAGDTEDGFRLDDQDNGYSDLEMHFEGHAFQDPTSAEEGMEDGHGEGDEVEAEEWGGEEEEEEREEGEFTRTNAWGSPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRNARRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPGEGPKREAELTRASAPFACLPQSGEGFKTTKPRKGPKNESSKGDLVIQQEVGLFRNLKVNNFRSSDLAINPVLVCSVTQDAGRFLLYQSYPE 453

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|585105634|gb|EWM24243.1| (mitotic cohesin [Nannochloropsis gaditana])

HSP 1 Score: 113.235 bits (282), Expect = 6.278e-27
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPD 93
            M +A  +L KKG LGKVWLA   +KKL +  +FQTD+TKS D I +P    L LRVSG LLLGVVRIYS KV+YL  DC  AL K+K+AFRP+
Sbjct:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVP-LALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPE 92

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|224007903|ref|XP_002292911.1| (hypothetical protein THAPSDRAFT_263720, partial [Thalassiosira pseudonana CCMP1335] >gi|220971773|gb|EED90107.1| hypothetical protein THAPSDRAFT_263720, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 112.079 bits (279), Expect = 1.404e-26
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQ-SEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRP 92
            M Y+Q+IL KKG LGKVWLA    +KK+ R  IF TD+  S D I NP    L LRVSG LLLGVVRIYS KVRYL  DC +A+ K+K+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKITRPQIFSTDIATSVDSIVNPTVP-LALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKMAFRP 92

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|397577477|gb|EJK50596.1| (hypothetical protein THAOC_30369 [Thalassiosira oceanica])

HSP 1 Score: 116.316 bits (290), Expect = 4.028e-26
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQ-SEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPD 93
            M Y+Q+IL KKG LGKVWLA    +KKL R  IF TD++ S D I NP    L LRVSG LLLGVVRIYS KV+YL TDC +A+ K+K+AF+PD
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKLGRPQIFNTDISASVDSIVNPTVP-LALRVSGHLLLGVVRIYSRKVKYLMTDCHEAMVKIKMAFKPD 93

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|635364966|emb|CCI46618.1| (unnamed protein product [Albugo candida] >gi|635368785|emb|CCI43090.1| unnamed protein product [Albugo candida])

HSP 1 Score: 120.553 bits (301), Expect = 1.070e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRP 92
            M Y+Q+IL KKG LGK+WLA   +KKLN+  IF  D+  S D I NP+   L LRVSG LLLGVVRIYS KV+YL +DC +AL K+K+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQVP-LALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRP 91

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|567946166|gb|ETK71977.1| (hypothetical protein L915_20862 [Phytophthora parasitica])

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-25
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPDALSQDIFPTSVQPLTPHI 111
            M Y+Q++L KKG LGK+WLA   +KKLN+Q IF  D+  S   I NP+   L LRVSG LLLGVVRIYS KV+YL TDC +AL K+K+AFRP  +     P + Q    HI
Sbjct:    1 MFYSQIVLAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQVP-LALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRPGIVD---LPANNQQAASHI 107

HSP 2 Score: 67.781 bits (164), Expect = 1.825e-8
Identity = 56/172 (32.56%), Postives = 79/172 (45.93%), Query Frame = 0

Query:  198 EMHFEGHAFQD--PTSAEEGMEDG---HGEGDEVEAEEWGGEEEEEEREEGEFTRTNAWGSPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRNA--RRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPG 362
            E HFE   F D  PT  E  M+DG   +  G   E EE   E+   + E G      +  +   E D    +    +WHP+TV + ++LR  L                    ++T+ +LT+    RRT AA +F+E+LQLKT D++D  Q   Y +I I  AAR  E IP 
Sbjct:  440 ENHFE---FADMGPTEPER-MDDGFPNYDIGAPFEPEEQNLEDLNVDIELGAVNDIRSDANGTTELDQPEASTAQHKWHPHTVKVMKVLRKSLND----------------KEEVTYKQLTKKTQDRRTAAA-LFFELLQLKTLDYVDVEQPAPYADIKISKAARFSEHIPA 590

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|570936157|gb|ETP01414.1| (hypothetical protein F441_21344 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 120.553 bits (301), Expect = 1.191e-25
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPDALSQDIFPTSVQPLTPHI 111
            M Y+Q++L KKG LGK+WLA   +KKLN+Q IF  D+  S   I NP+   L LRVSG LLLGVVRIYS KV+YL TDC +AL K+K+AFRP  +     P + Q    HI
Sbjct:    1 MFYSQIVLAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQVP-LALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRPGIVD---LPANNQQAASHI 107

HSP 2 Score: 68.1662 bits (165), Expect = 1.571e-8
Identity = 56/172 (32.56%), Postives = 79/172 (45.93%), Query Frame = 0

Query:  198 EMHFEGHAFQD--PTSAEEGMEDG---HGEGDEVEAEEWGGEEEEEEREEGEFTRTNAWGSPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRNA--RRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPG 362
            E HFE   F D  PT  E  M+DG   +  G   E EE   E+   + E G      +  +   E D    +    +WHP+TV + ++LR  L                    ++T+ +LT+    RRT AA +F+E+LQLKT D++D  Q   Y +I I  AAR  E IP 
Sbjct:  440 ENHFE---FADMGPTEPER-MDDGFPNYDIGAPFEPEEQNLEDLNVDIELGAVNDIRSDANGTTELDQPEASTAQHKWHPHTVKVMKVLRKSLND----------------KEEVTYKQLTKKTQDRRTAAA-LFFELLQLKTLDYVDVEQPAPYADIKISKAARFSEHIPA 590

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|301107822|ref|XP_002902993.1| (double-strand-break repair protein rad21 [Phytophthora infestans T30-4] >gi|262098111|gb|EEY56163.1| double-strand-break repair protein rad21 [Phytophthora infestans T30-4])

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-25
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRP 92
            M Y+Q+IL KKG LGK+WLA   +KKLN+Q IF  D+  S   I NP+   L LRVSG LLLGVVRIYS KV+YL TDC +AL K+K+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQVP-LALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRP 91

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|325183853|emb|CCA18311.1| (doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14] >gi|325183958|emb|CCA18416.1| doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14])

HSP 1 Score: 119.783 bits (299), Expect = 1.759e-25
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRP 92
            M Y+Q+IL KKG LGK+WLA   +KKLN+  IF  D+  S D I NP+   L LRV+G LLLGVVRIYS KV+YL +DC +AL K+K+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQVP-LALRVTGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRP 91

HSP 2 Score: 66.6254 bits (161), Expect = 3.676e-8
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 0

Query:  267 STRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRN--ARRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPG 362
            S +WHP+TV + + LRS L      QE+           Q+T+ +LTR+  +RRT AA +F+E+LQLKT D++   Q E +G+I I  AA   E IP 
Sbjct:  515 SHKWHPHTVKVMKALRSSL------QEK----------EQVTYRQLTRHTQSRRT-AAGIFFELLQLKTLDYVQIEQAEPFGDISISKAAHFTETIPA 595

[Close]

BLAST of EWM26627.1 vs. NCBI_GenBank
Match: gi|566008689|gb|ETI31600.1| (hypothetical protein F443_21455 [Phytophthora parasitica P1569] >gi|568004307|gb|ETL78631.1| hypothetical protein L917_20595 [Phytophthora parasitica] >gi|568034216|gb|ETM31892.1| hypothetical protein L914_20613 [Phytophthora parasitica] >gi|570312370|gb|ETO60318.1| hypothetical protein F444_21473 [Phytophthora parasitica P1976])

HSP 1 Score: 119.783 bits (299), Expect = 2.110e-25
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0

Query:    1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRP 92
            M Y+Q++L KKG LGK+WLA   +KKLN+Q IF  D+  S   I NP+   L LRVSG LLLGVVRIYS KV+YL TDC +AL K+K+AFRP
Sbjct:    1 MFYSQIVLAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQVP-LALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRP 91

HSP 2 Score: 67.781 bits (164), Expect = 1.857e-8
Identity = 56/172 (32.56%), Postives = 79/172 (45.93%), Query Frame = 0

Query:  198 EMHFEGHAFQD--PTSAEEGMEDG---HGEGDEVEAEEWGGEEEEEEREEGEFTRTNAWGSPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAAARLQEEGGGNGSGPASSQLTFGELTRNA--RRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPG 362
            E HFE   F D  PT  E  M+DG   +  G   E EE   E+   + E G      +  +   E D    +    +WHP+TV + ++LR  L                    ++T+ +LT+    RRT AA +F+E+LQLKT D++D  Q   Y +I I  AAR  E IP 
Sbjct:  440 ENHFE---FADMGPTEPER-MDDGFPNYDIGAPFEPEEQNLEDLNVDIELGAVNDIRSDANGTTELDQPEASTAQHKWHPHTVKVMKVLRKSLND----------------KEEVTYKQLTKKTQDRRTAAA-LFFELLQLKTLDYVDVEQPAPYADIKISKAARFSEHIPA 590

The following BLAST results are available for this feature:

BLAST of EWM26627.1 vs. NCBI_GenBank

BLAST of EWM26627.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585108715\|gb\|EWM26627.1\|	0.000e+0	100.00	double-strand-break repair protein rad21 [Nannochl...	[more]
gi\|585105634\|gb\|EWM24243.1\|	6.278e-27	60.22	mitotic cohesin [Nannochloropsis gaditana]	[more]
gi\|224007903\|ref\|XP_002292911.1\|	1.404e-26	61.29	hypothetical protein THAPSDRAFT_263720, partial [T...	[more]
gi\|397577477\|gb\|EJK50596.1\|	4.028e-26	61.70	hypothetical protein THAOC_30369 [Thalassiosira oc...	[more]
gi\|635364966\|emb\|CCI46618.1\|	1.070e-25	60.87	unnamed protein product [Albugo candida] >gi\|63536...	[more]
gi\|567946166\|gb\|ETK71977.1\|	1.169e-25	54.05	hypothetical protein L915_20862 [Phytophthora para...	[more]
gi\|570936157\|gb\|ETP01414.1\|	1.191e-25	54.05	hypothetical protein F441_21344 [Phytophthora para...	[more]
gi\|301107822\|ref\|XP_002902993.1\|	1.654e-25	61.96	double-strand-break repair protein rad21 [Phytopht...	[more]
gi\|325183853\|emb\|CCA18311.1\|	1.759e-25	59.78	doublestrandbreak repair protein rad21 putative [A...	[more]
gi\|566008689\|gb\|ETI31600.1\|	2.110e-25	60.87	hypothetical protein F443_21455 [Phytophthora para...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4070	rna4070	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications