EWM26619.1, cds4058 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|585108707|gb|EWM26619.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 830.476 bits (2144), Expect = 0.000e+0 Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0
Query: 1 MLTSDDSGGTHASTSLPSTRPRRTRQSIISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITARGYRQPCGPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQHDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTIFSWGTRFKDVKPRALELQVPHRSSSLPAGESL 397
MLTSDDSGGTHASTSLPSTRPRRTRQSIISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITARGYRQPCGPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQHDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTIFSWGTRFKDVKPRALELQVPHRSSSLPAGESL
Sbjct: 1 MLTSDDSGGTHASTSLPSTRPRRTRQSIISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITARGYRQPCGPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQHDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTIFSWGTRFKDVKPRALELQVPHRSSSLPAGESL 397
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|585108794|gb|EWM26706.1| (retinol dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 270.011 bits (689), Expect = 6.950e-84 Identity = 142/361 (39.34%), Postives = 212/361 (58.73%), Query Frame = 0
Query: 13 STSLPS--TRPRRTRQSIISKLNDFVHRD-YITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITARGYRQPCGPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYP-EGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQHD----VFARLPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTI 365
+ +PS ++P + ++S+LN+F+H + Y+ I +Y +WLGFW+F+P V L +YDL TA+G+R+PCGPVL+TGC +GFG L +ALA + WKV A + + P + + N+ + LD++N+++++A + + P EGLYALVNN G +W ++D +K+HM+VN Y IR TKA LPLLK+Y R S RI+ +NS +G++PG P Y+ +KHA +AW +SL E + I+ V P WH+ + VF P VQE+YG Y + E + R WK ENV ++ AVTAE+ RP +VG+D RF+ P L LPRR+ N +
Sbjct: 11 TVDIPSAPSKPEEKHEPLLSRLNNFLHSNIYVYIITYYLYWLGFWLFIPVVAFFTMLGFGLYDLFTAKGFRKPCGPVLITGCSSGFGLDLTMALAAQGWKVYACVRREADMA----PFSNNPNVKGLILDVTNEEQVRAAFATVDGENPEEGLYALVNNAG---FEHYGTTDWCSLDYFKVHMDVNYYGPIRVTKAALPLLKRYGRGGSAAA-RIININSTSGLLPGLPLKGGYSASKHAAEAWSNSLRQEMRHFNIQVTVVNPSWHDTRCALPPKEKLLAVFRAAPPAVQEDYGEPYVVEAAEEAYTGRQWFTWKPENVGRVMLWAVTAERYRPQYIVGLDARFVNMPFLALPRRIMNNL 363
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|585108719|gb|EWM26631.1| (NAD(P)-binding domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 227.639 bits (579), Expect = 1.570e-66 Identity = 110/281 (39.15%), Postives = 172/281 (61.21%), Query Frame = 0
Query: 11 HASTSLPSTRPRRTRQSIISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITARGYRQPCGPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYP-EGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQHDVFARL 290
H + S P + R +++++S+LN F+ DY++D +YGFW FW+FMP V+L G + +A+YD +T +G R+P GPVL+TGCD+GFG+ LALAL+E W V A C T GV + + NG + + +D++ +++++A + A +P EGLYALVNN V + G +W +++Y+ HME+N + +R K LPLLK+ R RI+ + S +G++PG S Y +KHA ++W +SL E +GI+ V P WH +I + Q D R+
Sbjct: 36 HGALSKPDGKTAR-KETLLSQLNSFLSADYVSDWAYYGFWFVFWLFMPYVVLGGIVFMALYDAVTCKGNRKPVGPVLITGCDSGFGRGLALALSELGWNVYATCMTTDGVHYFAK--NG--KVTALIMDVTKEEDVRAVMAKVDAAHPKEGLYALVNNAG---VDRFGTTDWCDVEHYRWHMEINFFGHVRMVKEALPLLKRAARHNDYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLRMELRHFGIQVCQVNPVWHRTEIAHSQRDHLVRI 308
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|585111089|gb|EWM28666.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 189.504 bits (480), Expect = 5.980e-53 Identity = 110/343 (32.07%), Postives = 182/343 (53.06%), Query Frame = 0
Query: 28 IISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLL---AVYDLITARGYRQPCGP--VLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQ----HDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRL 361
+I+ N+ H D+ +Y F+ W + P LLG L+ A + Y +P V++TGCDTGFGK+LAL L ++ +KV A+C T ++ + + I LD++ +D++ + A ++A +P+G++ALVNN V + GL++W+ + +++ MEVN ++ + TKAFLP LKK K RI+ ++S AG+ G P Y+ +KHA + + S+L E WGI +T+ P +H +I++ F + P +QEEYG +Y E++ +NV A VHA+T+ + + VGID + L L + P R+
Sbjct: 3 LINWANNVAHIPVFEDMCYYNFFFWAWFWGP---LLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDA---LQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAG---VSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKK-------SKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRV 329
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|585111118|gb|EWM28695.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 180.259 bits (456), Expect = 2.145e-49 Identity = 106/339 (31.27%), Postives = 187/339 (55.16%), Query Frame = 0
Query: 33 NDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITARGY----RQPC--GPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQ----HDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRL 361
N+ H D + + ++Y ++ G W+ P L+ VYD + + +P + +TGCDTGFG++LA+ LA++ ++V AAC T GV+ + + ++ + LD+++++++Q A + A+ PEGLYALVNN V K GL++W + +++ MEVN + + TKAFLPL+K RCK RIV ++S AG+ G P ++ Y+ +KHA + + SSL E WGI+ +T+ P +H +++ ++++ +Q +YG+ Y+ + K +++ NV A+ HAVT + R VG+D ++ + + P R+
Sbjct: 9 NNLCHIDLLEEWIWYSYFTGAWLLGP----FMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECS---TVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAG---VAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIK-------RCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRV 330
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|585106696|gb|EWM25060.1| (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana]) HSP 1 Score: 181.415 bits (459), Expect = 1.673e-46 Identity = 120/350 (34.29%), Postives = 179/350 (51.14%), Query Frame = 0
Query: 28 IISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITA---RGYRQPCG-PVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSM-NIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQHDVFAR----LPLRVQEEYGRQYYNKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTIFSW 368
+++ +ND +H + DI ++ + + + P+ LG L+ + L++ QP G VL+TGCDTGFG LA+AL ++ W+V A C T V + A GS ++ + +D++ +I E +A + P+ L+A+V N VG+ GLV+W + Y+ MEVNL+A I KA LPLLK+ K RIV + S AGI G P S YA +KHA +A+ +SL FE WGI TV P +H I + + L + Q EYG +Y V + + + W +V + LV A TA R +VG D F + PL+ LP I S+
Sbjct: 1210 MLNLMNDIMHLPIVDDIAWHLYHF-VRLLLGPLWALGLLISFLVKLLSGALVTRLEQPKGRAVLITGCDTGFGYDLAIALVKKGWRVYAGCLTQAAVAELKTKAAGSAGSMVSVLMDVTKQADIDRVVEQIAKESPKQLFAVVCNAG---VGRGGLVDWTPLATYRAIMEVNLFAMIATCKACLPLLKE-------SKGRIVNVTSMAGIFLGAPCMSAYAASKHAAEAFSTSLRFELEGWGIRVVTVNPSFHRTRISTNAAETVKQAYDDLDAKTQAEYGLEYLRAVQKLTSDQTDGC-WDPRHVVNTLVRATTAVSPRTQYIVGADATFCLLPLMNLPTPDIEKIVSF 1547
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|1210512056|dbj|GAX28911.1| (17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+) [Fistulifera solaris]) HSP 1 Score: 146.747 bits (369), Expect = 1.319e-36 Identity = 99/365 (27.12%), Postives = 180/365 (49.32%), Query Frame = 0
Query: 27 SIISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILL-----------GTLLLAV--YDLITARGYRQPCGPVLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEG------LYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDI----DYFQHDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIM--WKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTIF 366
+ + ++N +H++ I++ +W P+ +L G +L +V Y +G+ V++TGCDTGFG+ +AL AE + V A C + V + +N NI ++++ND+ ++ A++++ E L+AL+N VG G V++M ++ ++ M+VN + +R KAFLP+ K + RI+ + S AG+VP S YA +K+A + ++ EA +GI+ AT+ P +HE +I + A LP +EEYG ++ ++ + R P++ W+AENV ++ + + VVVG D +F++ L + P + +F
Sbjct: 11 AFLQEINSLIHQEPFESILYCVYWSVVIGVCSPIAILLLQLRLLFRLLGWILDSVRKYSACDPKGHPTRESAVVITGCDTGFGRDVALRAAEAGYIVFAGCLKEESVTERNQLSN---NIKAFTMNVTNDEHVEKAAQMVSRWLDETTTQQRILHALINMAG---VGFCGNVDFMPLNLFQTSMDVNFFGTVRCCKAFLPIFKSQATSNTYNDARILNIVSMAGLVPTSVGTSAYAASKYAVQGFSTAFRLEAMGFGIQVATINPSFHETNIVTGLSTQVEKLCADLPGAKREEYGEEFLEWLLTQT---RIPLLVSWRAENVVQQTMNCLMNRSIPSEVVVGSDAKFVLVTLRIFPAWFRDILF 366
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|12006414|gb|AAG44847.1|AF283540_1 (microsomal retinol dehydrogenase 1 [Branchiostoma floridae]) HSP 1 Score: 140.198 bits (352), Expect = 1.286e-34 Identity = 94/287 (32.75%), Postives = 149/287 (51.92%), Query Frame = 0
Query: 86 VLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLA-AQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDIDYFQH------DVFARLPLRVQEEYGRQYY----NKVMESSKALRNPIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRL 361
VL+TGCDTGFG LA L + +V A C T+ GV R+ S + PI++D+S+ D +Q ++ A +GL+ LVNN V G +EW T+++Y+ + VNL I TK FLPLLKK + R+V + S AG V P+A Y VAK+ +A+ SL +G++ + P + +I+ ++ D++ RL + EYG ++ + ++ S + +++P+ V A+ HA+ A R V+G D RF+ P+ LP L
Sbjct: 37 VLITGCDTGFGNLLAKRLDQLGLRVFAGCLTEAGVAELRQSC--SERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLWGLVNNAGILGVA-GGTMEWATMEDYQAVLNVNLLGMIDVTKTFLPLLKKSS-------GRVVNVASAAGRV-AVPDAGPYTVAKYGVEAFSDSLRRAMRYFGVKVHIIEPGYFRTEINNQENALRRLDDIWQRLSPETRTEYGEEFLQAGKDAIIASDRFMQDPVA-----VVDAMEHALCATHPRSRYVIGWDARFIFVPICWLPTDL 307
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|1210525164|dbj|GAX16098.1| (17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+) [Fistulifera solaris]) HSP 1 Score: 139.043 bits (349), Expect = 9.025e-34 Identity = 90/293 (30.72%), Postives = 150/293 (51.19%), Query Frame = 0
Query: 86 VLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGSMNIDPIKLDLSNDDEIQACAELLAAQYPEG------LYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEIDI----DYFQHDVFARLPLRVQEEYGRQYYNKVMESSKALRNPIM--WKAENVTHALVHAVTAEKLRPYVVVGIDGRFLMSPLLLLPRRLYNTIF 366
V++TGCDTGFG+ +AL AE + V A C D +S E S NI+ ++++ D ++ +++ E L+ALVN VG G V++M ++ ++ M+VN + +R KAFLP+ K + RI+ + S AG+VP S YA +K+A + ++ EA +GI+ AT+ P +HE +I + A LP +EEYG +Y ++ + R P++ W+AENV ++ + + VVVG D +F++ L + P + +F
Sbjct: 83 VVITGCDTGFGRDVALRAAEAGYTVFAGCLKD---ESVTELNQLSSNINSFTMNVTIDVHVEKAVHIVSQWLDETTTQQRILHALVNMAG---VGFCGNVDFMPLNLFQTSMDVNFFGTVRCCKAFLPIFKSQATSNTYNDARILNMVSMAGLVPTSVGTSAYAASKYAVQGFSTAFRLEAMGFGIQVATINPSFHETNIVTGLSTQVEKLCADLPGAKREEYGEEYLEWLLTQT---RIPLLISWRAENVVQQTMNCLVNRTIPSEVVVGSDAKFVLVTLRIFPAWFRDILF 366
BLAST of EWM26619.1 vs. NCBI_GenBank
Match: gi|1001610305|gb|KXS14083.1| (NAD(P)-binding protein [Gonapodya prolifera JEL478]) HSP 1 Score: 134.035 bits (336), Expect = 4.007e-32 Identity = 96/283 (33.92%), Postives = 136/283 (48.06%), Query Frame = 0
Query: 86 VLVTGCDTGFGKALALALAERHWKVIAACSTDTGVKSYREPANGS---MNIDPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEW--MTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRC-------KPRIVTLNSNAGIVPGQPNASCYAVAKHACDAWMSSLTFEANVWGIEAATVCPCWHEID----IDYFQHDVFARLPLRVQEEYGRQYYNKVMESSKALRN--PIMWKAENVTHALVHAVTAEKLRPYVVVGIDGRFL 350
V VTGCDTGFG A LAE+ + V AAC TD+G++S+ + A I +KLD++ D ++QAC LL + PEGL+ LVNN G +W +D + MEVN Y +R T AFLPLL++Y PRIVT++S AG V P+ S Y +KHA + +L E GI + + P + ID + P V E YG + + S A P + + V + +V V A + P+ +VG + L
Sbjct: 56 VFVTGCDTGFGNITAKQLAEKGYTVYAACLTDSGIESFNKLAASDSRYRTIRAVKLDVTKDADVQACRALLEREAPEGLFCLVNN-----AGLHAAYKWELSPMDMIQKDMEVNYYGVVRVTMAFLPLLRRYVASNKSAIAAGQAPPPRIVTVSSIAGSVKASPSGS-YCASKHAAQVFGVTLRQEVAHQGIHVSLIEPYYARTPFLTVIDERKIQRILSQPKEVIEAYGGEADIRKRMSRSAFHTAMPRVLEPPEVMNVMVGQVHAWRPNPHNLVGFESNLL 332 The following BLAST results are available for this feature:
BLAST of EWM26619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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