EWM30285.1, cds398 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|585112944|gb|EWM30285.1| (high mobility group protein [Nannochloropsis gaditana] >gi|585112945|gb|EWM30286.1| high mobility group protein [Nannochloropsis gaditana]) HSP 1 Score: 1461.82 bits (3783), Expect = 0.000e+0 Identity = 718/718 (100.00%), Postives = 718/718 (100.00%), Query Frame = 0
Query: 1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQKETGRVADDASHAPEEGRAMSMLPSPGTEGREKASMPEQGITTTVSIRSTKAKARVPPPPVTDGHWPSSRSDALPACEPVFPERHEHAPAAQPAPSICSQTGLGLPTLKAQHQEQRQQQQARQQLAREQQERQHRLQQQQLEQKQLREQRENKREHQWEREGQVAEYEDDSFLMDYLNAAHASFAIYDNFMRGIETEAAAALAISSQRVSSVSAYASSSGSTRGQNETTRVASKPPGSSSSFASGDLSRNSNEWISGGDSWKDHTSSPLKQEPGSDVKGFRSARSPATSPVDSCGALSDSSAASALESHGSCRFRSRDEASVGGGWPARGKKGPDEAHHSSSFPAIGAASSVSGESSVAGDDVARKPQMALATGRLSTSALQTSKPCGREDIPLPQIAPHPPVDLGKRAVSPESGSPLFNRPRQGDQLSRPLESAARGHHILGLLPATPCSPSKCAPLPVAVVEAVRPSSSAERHSSPFLQKLDVEGKAIESQGHENEHPHHPPMLVVTTATPEGGVRQTTYQRLPAEWPPSSSSLNATQSLTREELS 718
MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQKETGRVADDASHAPEEGRAMSMLPSPGTEGREKASMPEQGITTTVSIRSTKAKARVPPPPVTDGHWPSSRSDALPACEPVFPERHEHAPAAQPAPSICSQTGLGLPTLKAQHQEQRQQQQARQQLAREQQERQHRLQQQQLEQKQLREQRENKREHQWEREGQVAEYEDDSFLMDYLNAAHASFAIYDNFMRGIETEAAAALAISSQRVSSVSAYASSSGSTRGQNETTRVASKPPGSSSSFASGDLSRNSNEWISGGDSWKDHTSSPLKQEPGSDVKGFRSARSPATSPVDSCGALSDSSAASALESHGSCRFRSRDEASVGGGWPARGKKGPDEAHHSSSFPAIGAASSVSGESSVAGDDVARKPQMALATGRLSTSALQTSKPCGREDIPLPQIAPHPPVDLGKRAVSPESGSPLFNRPRQGDQLSRPLESAARGHHILGLLPATPCSPSKCAPLPVAVVEAVRPSSSAERHSSPFLQKLDVEGKAIESQGHENEHPHHPPMLVVTTATPEGGVRQTTYQRLPAEWPPSSSSLNATQSLTREELS
Sbjct: 1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQKETGRVADDASHAPEEGRAMSMLPSPGTEGREKASMPEQGITTTVSIRSTKAKARVPPPPVTDGHWPSSRSDALPACEPVFPERHEHAPAAQPAPSICSQTGLGLPTLKAQHQEQRQQQQARQQLAREQQERQHRLQQQQLEQKQLREQRENKREHQWEREGQVAEYEDDSFLMDYLNAAHASFAIYDNFMRGIETEAAAALAISSQRVSSVSAYASSSGSTRGQNETTRVASKPPGSSSSFASGDLSRNSNEWISGGDSWKDHTSSPLKQEPGSDVKGFRSARSPATSPVDSCGALSDSSAASALESHGSCRFRSRDEASVGGGWPARGKKGPDEAHHSSSFPAIGAASSVSGESSVAGDDVARKPQMALATGRLSTSALQTSKPCGREDIPLPQIAPHPPVDLGKRAVSPESGSPLFNRPRQGDQLSRPLESAARGHHILGLLPATPCSPSKCAPLPVAVVEAVRPSSSAERHSSPFLQKLDVEGKAIESQGHENEHPHHPPMLVVTTATPEGGVRQTTYQRLPAEWPPSSSSLNATQSLTREELS 718
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|953496749|emb|CEG42349.1| (high mobility group protein [Plasmopara halstedii]) HSP 1 Score: 181.415 bits (459), Expect = 6.860e-49 Identity = 84/168 (50.00%), Postives = 121/168 (72.02%), Query Frame = 0
Query: 3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
++RK KKAPGAPKR KSPYILFS+E RE IK +P +KVT++M IA+ W K+SE+++ W+ AE D+ RY+ EM+ Y GPL+VP R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+ E K PF+EKE+ +RA YK+ ME+W
Sbjct: 26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKSTMPDNSKVTDVMRAIADAWGKMSEEDKHPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWSKATDEQKAPFVEKEKADRARYKSEMEEWN 193
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|675171513|ref|XP_008894641.1| (hypothetical protein PPTG_03713 [Phytophthora parasitica INRA-310] >gi|566018038|gb|ETI40949.1| hypothetical protein F443_13786 [Phytophthora parasitica P1569] >gi|567955416|gb|ETK81049.1| hypothetical protein L915_13438 [Phytophthora parasitica] >gi|567984098|gb|ETL34475.1| hypothetical protein L916_13326 [Phytophthora parasitica] >gi|568013568|gb|ETL87745.1| hypothetical protein L917_13145 [Phytophthora parasitica] >gi|568043700|gb|ETM40974.1| hypothetical protein L914_13234 [Phytophthora parasitica] >gi|568106152|gb|ETN20788.1| hypothetical protein PPTG_03713 [Phytophthora parasitica INRA-310] >gi|570321669|gb|ETO69617.1| hypothetical protein F444_13840 [Phytophthora parasitica P1976] >gi|570945481|gb|ETP10738.1| hypothetical protein F441_13711 [Phytophthora parasitica CJ01A1] >gi|570977208|gb|ETP38863.1| hypothetical protein F442_13634 [Phytophthora parasitica P10297] >gi|970631194|gb|KUF77888.1| High mobility group protein 1.2 [Phytophthora nicotianae] >gi|970658723|gb|KUF96456.1| CBL-interacting protein kinase 33 [Phytophthora nicotianae]) HSP 1 Score: 178.718 bits (452), Expect = 6.750e-48 Identity = 83/167 (49.70%), Postives = 121/167 (72.46%), Query Frame = 0
Query: 3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
++RK KKAPGAPKR KSPYILFS+E RE IK +P +KVT++M IA+ W K+S+++++ W+ AE D+ RY+ EM+ Y GPL+VP R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+ E K PF+EKE+ +RA YK ME+W
Sbjct: 26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKADRARYKREMEEW 192
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|1214689922|gb|OWZ05327.1| (hypothetical protein PHMEG_00022604 [Phytophthora megakarya]) HSP 1 Score: 177.948 bits (450), Expect = 1.110e-47 Identity = 83/167 (49.70%), Postives = 121/167 (72.46%), Query Frame = 0
Query: 3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
++RK KKAPGAPKR KSPYILFS+E RE IK +P +KVT++M IA+ W K+S+++++ W+ AE D+ RY+ EM+ Y GPL+VP R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+ E K PF+EKE+ +RA YK ME+W
Sbjct: 26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREMEEW 192
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|695452440|ref|XP_009535967.1| (hypothetical protein PHYSODRAFT_288743 [Phytophthora sojae] >gi|348669511|gb|EGZ09334.1| hypothetical protein PHYSODRAFT_288743 [Phytophthora sojae]) HSP 1 Score: 176.407 bits (446), Expect = 4.543e-47 Identity = 83/167 (49.70%), Postives = 120/167 (71.86%), Query Frame = 0
Query: 3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
++RK KKAPGAPKR KSPYILFS+E RE IK +P +KVT++M IA+ W K+ ++E++ W+ AE D+ RY+ EM+ Y GPL+VP R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+ E K PF+EKE+ +RA YK ME+W
Sbjct: 26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMGDEEKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREMEEW 192
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|669164906|ref|XP_008618015.1| (hypothetical protein SDRG_13697 [Saprolegnia diclina VS20] >gi|530730376|gb|EQC28618.1| hypothetical protein SDRG_13697 [Saprolegnia diclina VS20]) HSP 1 Score: 174.866 bits (442), Expect = 1.373e-46 Identity = 82/170 (48.24%), Postives = 122/170 (71.76%), Query Frame = 0
Query: 1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
+ ++++ KKAPGAPKR KSPYILFS++ RE IK +P +KVT++M IA+ W K+SE+E+ W+ AE D+ RY+ EM+ Y GPL+VP R +++P+ PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+K K PF+EKE+E+RA YK ME+W
Sbjct: 18 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEWN 187
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|813164762|ref|XP_012203441.1| (hypothetical protein SPRG_08822 [Saprolegnia parasitica CBS 223.65] >gi|641531826|gb|KDO25880.1| hypothetical protein SPRG_08822 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 174.866 bits (442), Expect = 1.387e-46 Identity = 82/170 (48.24%), Postives = 122/170 (71.76%), Query Frame = 0
Query: 1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
+ ++++ KKAPGAPKR KSPYILFS++ RE IK +P +KVT++M IA+ W K+SE+E+ W+ AE D+ RY+ EM+ Y GPL+VP R +++P+ PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+K K PF+EKE+E+RA YK ME+W
Sbjct: 18 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEWN 187
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|673032420|ref|XP_008870171.1| (hypothetical protein H310_06772 [Aphanomyces invadans] >gi|574474171|gb|ETW01173.1| hypothetical protein H310_06772 [Aphanomyces invadans]) HSP 1 Score: 174.866 bits (442), Expect = 1.629e-46 Identity = 83/160 (51.88%), Postives = 115/160 (71.88%), Query Frame = 0
Query: 10 KKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
KKAPGAPKR KSPYILFS++ RE IK + AKVT++M IA+ W K+SE E+ W+ AE D+ RY+ EM+ Y GPL+VP R +++P+ PKRA+SAF+ + + ++ R++ +H EM N+EI K L E W A+K K PF+EKE+E+RA YK ME+W
Sbjct: 31 KKAPGAPKRGKSPYILFSMDKREEIKATMAPNAKVTDVMRAIADAWSKMSEDEKAPWKTAAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKSEHQEMKNTEISKQLGEAWGKATKAQKAPFVEKEKEDRARYKREMEEW 190
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|1173949014|gb|OQR97092.1| (hypothetical protein ACHHYP_12750 [Achlya hypogyna]) HSP 1 Score: 174.481 bits (441), Expect = 1.823e-46 Identity = 82/169 (48.52%), Postives = 122/169 (72.19%), Query Frame = 0
Query: 1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
+ ++++ KKAPGAPKR KSPYILFS++ RE IK +P +KVT++M IA+ W K+SE+E+ W+ AE D+ RY+ EM+ Y GPL+VP R +++P+ PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W A+K K PF+EKE+E+RA YK ME+W
Sbjct: 17 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEW 185
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|1173952705|gb|OQS00320.1| (hypothetical protein THRCLA_06027 [Thraustotheca clavata]) HSP 1 Score: 179.874 bits (455), Expect = 4.958e-46 Identity = 84/170 (49.41%), Postives = 122/170 (71.76%), Query Frame = 0
Query: 1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
+ ++++ KKAPGAPKR KSPYILFS++ RE IK +P +KVT++M IAE W K+SE E+ W+ AE D+ RY+ EM+ Y GPL+VP R +++P+ PKRA+SAF+ + + ++ R++ +HP+M N+EI K L E W A+K K PF+EKE+E+RA YK ME+W
Sbjct: 17 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIAEAWSKMSEDEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHPDMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEWN 186 The following BLAST results are available for this feature:
BLAST of EWM30285.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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