EWM30285.1, cds398 (CDS) Nannochloropsis gaditana

Overview
NameEWM30285.1
Unique Namecds398
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:991408..993564 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30285.1
Producthigh mobility group protein
Orig transcript idgnl|cribi|Naga_100003g87.1802.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:991408..993564 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Homology
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|585112944|gb|EWM30285.1| (high mobility group protein [Nannochloropsis gaditana] >gi|585112945|gb|EWM30286.1| high mobility group protein [Nannochloropsis gaditana])

HSP 1 Score: 1461.82 bits (3783), Expect = 0.000e+0
Identity = 718/718 (100.00%), Postives = 718/718 (100.00%), Query Frame = 0
Query:    1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQKETGRVADDASHAPEEGRAMSMLPSPGTEGREKASMPEQGITTTVSIRSTKAKARVPPPPVTDGHWPSSRSDALPACEPVFPERHEHAPAAQPAPSICSQTGLGLPTLKAQHQEQRQQQQARQQLAREQQERQHRLQQQQLEQKQLREQRENKREHQWEREGQVAEYEDDSFLMDYLNAAHASFAIYDNFMRGIETEAAAALAISSQRVSSVSAYASSSGSTRGQNETTRVASKPPGSSSSFASGDLSRNSNEWISGGDSWKDHTSSPLKQEPGSDVKGFRSARSPATSPVDSCGALSDSSAASALESHGSCRFRSRDEASVGGGWPARGKKGPDEAHHSSSFPAIGAASSVSGESSVAGDDVARKPQMALATGRLSTSALQTSKPCGREDIPLPQIAPHPPVDLGKRAVSPESGSPLFNRPRQGDQLSRPLESAARGHHILGLLPATPCSPSKCAPLPVAVVEAVRPSSSAERHSSPFLQKLDVEGKAIESQGHENEHPHHPPMLVVTTATPEGGVRQTTYQRLPAEWPPSSSSLNATQSLTREELS 718
            MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQKETGRVADDASHAPEEGRAMSMLPSPGTEGREKASMPEQGITTTVSIRSTKAKARVPPPPVTDGHWPSSRSDALPACEPVFPERHEHAPAAQPAPSICSQTGLGLPTLKAQHQEQRQQQQARQQLAREQQERQHRLQQQQLEQKQLREQRENKREHQWEREGQVAEYEDDSFLMDYLNAAHASFAIYDNFMRGIETEAAAALAISSQRVSSVSAYASSSGSTRGQNETTRVASKPPGSSSSFASGDLSRNSNEWISGGDSWKDHTSSPLKQEPGSDVKGFRSARSPATSPVDSCGALSDSSAASALESHGSCRFRSRDEASVGGGWPARGKKGPDEAHHSSSFPAIGAASSVSGESSVAGDDVARKPQMALATGRLSTSALQTSKPCGREDIPLPQIAPHPPVDLGKRAVSPESGSPLFNRPRQGDQLSRPLESAARGHHILGLLPATPCSPSKCAPLPVAVVEAVRPSSSAERHSSPFLQKLDVEGKAIESQGHENEHPHHPPMLVVTTATPEGGVRQTTYQRLPAEWPPSSSSLNATQSLTREELS
Sbjct:    1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQKETGRVADDASHAPEEGRAMSMLPSPGTEGREKASMPEQGITTTVSIRSTKAKARVPPPPVTDGHWPSSRSDALPACEPVFPERHEHAPAAQPAPSICSQTGLGLPTLKAQHQEQRQQQQARQQLAREQQERQHRLQQQQLEQKQLREQRENKREHQWEREGQVAEYEDDSFLMDYLNAAHASFAIYDNFMRGIETEAAAALAISSQRVSSVSAYASSSGSTRGQNETTRVASKPPGSSSSFASGDLSRNSNEWISGGDSWKDHTSSPLKQEPGSDVKGFRSARSPATSPVDSCGALSDSSAASALESHGSCRFRSRDEASVGGGWPARGKKGPDEAHHSSSFPAIGAASSVSGESSVAGDDVARKPQMALATGRLSTSALQTSKPCGREDIPLPQIAPHPPVDLGKRAVSPESGSPLFNRPRQGDQLSRPLESAARGHHILGLLPATPCSPSKCAPLPVAVVEAVRPSSSAERHSSPFLQKLDVEGKAIESQGHENEHPHHPPMLVVTTATPEGGVRQTTYQRLPAEWPPSSSSLNATQSLTREELS 718          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|953496749|emb|CEG42349.1| (high mobility group protein [Plasmopara halstedii])

HSP 1 Score: 181.415 bits (459), Expect = 6.860e-49
Identity = 84/168 (50.00%), Postives = 121/168 (72.02%), Query Frame = 0
Query:    3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
            ++RK   KKAPGAPKR KSPYILFS+E RE IK  +P  +KVT++M  IA+ W K+SE+++  W+  AE D+ RY+ EM+ Y GPL+VP  R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+ E K PF+EKE+ +RA YK+ ME+W 
Sbjct:   26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKSTMPDNSKVTDVMRAIADAWGKMSEEDKHPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWSKATDEQKAPFVEKEKADRARYKSEMEEWN 193          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|675171513|ref|XP_008894641.1| (hypothetical protein PPTG_03713 [Phytophthora parasitica INRA-310] >gi|566018038|gb|ETI40949.1| hypothetical protein F443_13786 [Phytophthora parasitica P1569] >gi|567955416|gb|ETK81049.1| hypothetical protein L915_13438 [Phytophthora parasitica] >gi|567984098|gb|ETL34475.1| hypothetical protein L916_13326 [Phytophthora parasitica] >gi|568013568|gb|ETL87745.1| hypothetical protein L917_13145 [Phytophthora parasitica] >gi|568043700|gb|ETM40974.1| hypothetical protein L914_13234 [Phytophthora parasitica] >gi|568106152|gb|ETN20788.1| hypothetical protein PPTG_03713 [Phytophthora parasitica INRA-310] >gi|570321669|gb|ETO69617.1| hypothetical protein F444_13840 [Phytophthora parasitica P1976] >gi|570945481|gb|ETP10738.1| hypothetical protein F441_13711 [Phytophthora parasitica CJ01A1] >gi|570977208|gb|ETP38863.1| hypothetical protein F442_13634 [Phytophthora parasitica P10297] >gi|970631194|gb|KUF77888.1| High mobility group protein 1.2 [Phytophthora nicotianae] >gi|970658723|gb|KUF96456.1| CBL-interacting protein kinase 33 [Phytophthora nicotianae])

HSP 1 Score: 178.718 bits (452), Expect = 6.750e-48
Identity = 83/167 (49.70%), Postives = 121/167 (72.46%), Query Frame = 0
Query:    3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
            ++RK   KKAPGAPKR KSPYILFS+E RE IK  +P  +KVT++M  IA+ W K+S+++++ W+  AE D+ RY+ EM+ Y GPL+VP  R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+ E K PF+EKE+ +RA YK  ME+W
Sbjct:   26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKADRARYKREMEEW 192          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|1214689922|gb|OWZ05327.1| (hypothetical protein PHMEG_00022604 [Phytophthora megakarya])

HSP 1 Score: 177.948 bits (450), Expect = 1.110e-47
Identity = 83/167 (49.70%), Postives = 121/167 (72.46%), Query Frame = 0
Query:    3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
            ++RK   KKAPGAPKR KSPYILFS+E RE IK  +P  +KVT++M  IA+ W K+S+++++ W+  AE D+ RY+ EM+ Y GPL+VP  R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+ E K PF+EKE+ +RA YK  ME+W
Sbjct:   26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREMEEW 192          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|695452440|ref|XP_009535967.1| (hypothetical protein PHYSODRAFT_288743 [Phytophthora sojae] >gi|348669511|gb|EGZ09334.1| hypothetical protein PHYSODRAFT_288743 [Phytophthora sojae])

HSP 1 Score: 176.407 bits (446), Expect = 4.543e-47
Identity = 83/167 (49.70%), Postives = 120/167 (71.86%), Query Frame = 0
Query:    3 RQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
            ++RK   KKAPGAPKR KSPYILFS+E RE IK  +P  +KVT++M  IA+ W K+ ++E++ W+  AE D+ RY+ EM+ Y GPL+VP  R +++PD PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+ E K PF+EKE+ +RA YK  ME+W
Sbjct:   26 KKRKRLQKKAPGAPKRGKSPYILFSMEKREEIKATMPENSKVTDVMRAIADAWGKMGDEEKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREMEEW 192          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|669164906|ref|XP_008618015.1| (hypothetical protein SDRG_13697 [Saprolegnia diclina VS20] >gi|530730376|gb|EQC28618.1| hypothetical protein SDRG_13697 [Saprolegnia diclina VS20])

HSP 1 Score: 174.866 bits (442), Expect = 1.373e-46
Identity = 82/170 (48.24%), Postives = 122/170 (71.76%), Query Frame = 0
Query:    1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
            + ++++   KKAPGAPKR KSPYILFS++ RE IK  +P  +KVT++M  IA+ W K+SE+E+  W+  AE D+ RY+ EM+ Y GPL+VP  R +++P+ PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+K  K PF+EKE+E+RA YK  ME+W 
Sbjct:   18 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEWN 187          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|813164762|ref|XP_012203441.1| (hypothetical protein SPRG_08822 [Saprolegnia parasitica CBS 223.65] >gi|641531826|gb|KDO25880.1| hypothetical protein SPRG_08822 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 174.866 bits (442), Expect = 1.387e-46
Identity = 82/170 (48.24%), Postives = 122/170 (71.76%), Query Frame = 0
Query:    1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
            + ++++   KKAPGAPKR KSPYILFS++ RE IK  +P  +KVT++M  IA+ W K+SE+E+  W+  AE D+ RY+ EM+ Y GPL+VP  R +++P+ PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+K  K PF+EKE+E+RA YK  ME+W 
Sbjct:   18 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEWN 187          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|673032420|ref|XP_008870171.1| (hypothetical protein H310_06772 [Aphanomyces invadans] >gi|574474171|gb|ETW01173.1| hypothetical protein H310_06772 [Aphanomyces invadans])

HSP 1 Score: 174.866 bits (442), Expect = 1.629e-46
Identity = 83/160 (51.88%), Postives = 115/160 (71.88%), Query Frame = 0
Query:   10 KKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
            KKAPGAPKR KSPYILFS++ RE IK  +   AKVT++M  IA+ W K+SE E+  W+  AE D+ RY+ EM+ Y GPL+VP  R +++P+ PKRA+SAF+ + + ++ R++ +H EM N+EI K L E W  A+K  K PF+EKE+E+RA YK  ME+W
Sbjct:   31 KKAPGAPKRGKSPYILFSMDKREEIKATMAPNAKVTDVMRAIADAWSKMSEDEKAPWKTAAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKSEHQEMKNTEISKQLGEAWGKATKAQKAPFVEKEKEDRARYKREMEEW 190          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|1173949014|gb|OQR97092.1| (hypothetical protein ACHHYP_12750 [Achlya hypogyna])

HSP 1 Score: 174.481 bits (441), Expect = 1.823e-46
Identity = 82/169 (48.52%), Postives = 122/169 (72.19%), Query Frame = 0
Query:    1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQW 169
            + ++++   KKAPGAPKR KSPYILFS++ RE IK  +P  +KVT++M  IA+ W K+SE+E+  W+  AE D+ RY+ EM+ Y GPL+VP  R +++P+ PKRA+SAF+ + + ++ R++ +H +M N+EI K L E W  A+K  K PF+EKE+E+RA YK  ME+W
Sbjct:   17 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEW 185          
BLAST of EWM30285.1 vs. NCBI_GenBank
Match: gi|1173952705|gb|OQS00320.1| (hypothetical protein THRCLA_06027 [Thraustotheca clavata])

HSP 1 Score: 179.874 bits (455), Expect = 4.958e-46
Identity = 84/170 (49.41%), Postives = 122/170 (71.76%), Query Frame = 0
Query:    1 MKRQRKAALKKAPGAPKRFKSPYILFSIECREAIKRQLPSQAKVTEIMSKIAETWRKLSEKERRHWEALAERDRARYDSEMSRYQGPLKVPRVRPRRYPDQPKRATSAFMQFVRSVKARVRQQHPEMSNSEIMKMLTEQWRSASKEDKLPFLEKEREERAIYKTAMEQWQ 170
            + ++++   KKAPGAPKR KSPYILFS++ RE IK  +P  +KVT++M  IAE W K+SE E+  W+  AE D+ RY+ EM+ Y GPL+VP  R +++P+ PKRA+SAF+ + + ++ R++ +HP+M N+EI K L E W  A+K  K PF+EKE+E+RA YK  ME+W 
Sbjct:   17 VNKKKRRLQKKAPGAPKRGKSPYILFSMDKREEIKATMPPNSKVTDVMRAIAEAWSKMSEDEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHPDMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEWN 186          
The following BLAST results are available for this feature:
BLAST of EWM30285.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112944|gb|EWM30285.1|0.000e+0100.00high mobility group protein [Nannochloropsis gadit... [more]
gi|953496749|emb|CEG42349.1|6.860e-4950.00high mobility group protein [Plasmopara halstedii][more]
gi|675171513|ref|XP_008894641.1|6.750e-4849.70hypothetical protein PPTG_03713 [Phytophthora para... [more]
gi|1214689922|gb|OWZ05327.1|1.110e-4749.70hypothetical protein PHMEG_00022604 [Phytophthora ... [more]
gi|695452440|ref|XP_009535967.1|4.543e-4749.70hypothetical protein PHYSODRAFT_288743 [Phytophtho... [more]
gi|669164906|ref|XP_008618015.1|1.373e-4648.24hypothetical protein SDRG_13697 [Saprolegnia dicli... [more]
gi|813164762|ref|XP_012203441.1|1.387e-4648.24hypothetical protein SPRG_08822 [Saprolegnia paras... [more]
gi|673032420|ref|XP_008870171.1|1.629e-4651.88hypothetical protein H310_06772 [Aphanomyces invad... [more]
gi|1173949014|gb|OQR97092.1|1.823e-4648.52hypothetical protein ACHHYP_12750 [Achlya hypogyna... [more]
gi|1173952705|gb|OQS00320.1|4.958e-4649.41hypothetical protein THRCLA_06027 [Thraustotheca c... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna398rna398Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications