EWM26704.1, cds3940 (CDS) Nannochloropsis gaditana

Overview
NameEWM26704.1
Unique Namecds3940
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:488227..489933 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26704.1
Productpseudouridine family
Orig transcript idgnl|cribi|Naga_100001g174.8215.mrna
GeneRluD
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:488227..489933 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006224PsdUridine_synth_RluC/D_CS
IPR006145PsdUridine_synth_RsuA/RluD
IPR002942S4_RNA-bd
Homology
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|585108792|gb|EWM26704.1| (pseudouridine family [Nannochloropsis gaditana])

HSP 1 Score: 1173.69 bits (3035), Expect = 0.000e+0
Identity = 568/568 (100.00%), Postives = 568/568 (100.00%), Query Frame = 0
Query:    1 MAKCPPDGTTIAFFSSVHFLIFVMGIYLKTSDGFICPRGGMQRLSLSPCPQQRTVFAMMAGRKPPWQRRGPDKKQDSEDELWVLEQSLLNGSSPRTSAFVPSITPTSKTSSSTPEKTDNTLKDTDGNFGTLRDEANITAQFMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWDMVDRRPSAGDESMTDGKDLIESQQGWEEVVHDPKAGERVVDEFDWEID 568
            MAKCPPDGTTIAFFSSVHFLIFVMGIYLKTSDGFICPRGGMQRLSLSPCPQQRTVFAMMAGRKPPWQRRGPDKKQDSEDELWVLEQSLLNGSSPRTSAFVPSITPTSKTSSSTPEKTDNTLKDTDGNFGTLRDEANITAQFMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWDMVDRRPSAGDESMTDGKDLIESQQGWEEVVHDPKAGERVVDEFDWEID
Sbjct:    1 MAKCPPDGTTIAFFSSVHFLIFVMGIYLKTSDGFICPRGGMQRLSLSPCPQQRTVFAMMAGRKPPWQRRGPDKKQDSEDELWVLEQSLLNGSSPRTSAFVPSITPTSKTSSSTPEKTDNTLKDTDGNFGTLRDEANITAQFMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWDMVDRRPSAGDESMTDGKDLIESQQGWEEVVHDPKAGERVVDEFDWEID 568          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|1210511732|dbj|GAX29216.1| (23S rRNA pseudouridine1911/1915/1917 synthase [Fistulifera solaris])

HSP 1 Score: 244.973 bits (624), Expect = 5.259e-71
Identity = 158/389 (40.62%), Postives = 207/389 (53.21%), Query Frame = 0
Query:  153 RVDRLLTQRLKGHSRSSVCDLLDRGFV---YVNGSPARKSLKIVEGDEIFVRQCATNERLAE--VEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVV--GSEG-------------RPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGV-TRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWD 520
            R+D  L   L   SRS    L+  G V     +    +KS K+ EG  + +       ++    +  E+IPLD+LYEDEH+I +NKA GMVVHPA GN  GT VNAL+ ++        E V  GS               RPG+VHRLDKGT+GVL+ AK + A  +LS AFA R+V KTYLAI++GNP  Q   ID PI RHP  RQRM V        +S                G +  D+ +   S+                  +GR+A S V TLAFDG+LSVV+V I TGRTHQIRVHLQ R  P+ GD++YG   WN R  +   +  RP+LHA +L ++HPVTG  +   AP+  DM  VA  I P+    E+ E ++
Sbjct:  124 RIDAALAACLANESRSVCGSLVTEGCVQDGVTHEVLNKKSYKVQEGQTLRIDLSQRENKVPTDILVPENIPLDILYEDEHMIVLNKAAGMVVHPAAGNWRGTVVNALVYYLPNSPYGSGEFVTNGSMAANSNNEDGEPVLFRPGIVHRLDKGTTGVLVVAKNSHALTSLSEAFANRQVQKTYLAITVGNPGKQ-VTIDKPIARHPIHRQRMRVVPDPHQRDSS----------------GMAPKDRLLQPQSS------------------SGRRALSFVDTLAFDGQLSVVQVQIATGRTHQIRVHLQDRHTPIYGDDVYGLKDWNDRLFKTQQIRDRPLLHAYKLQIEHPVTGQVMEFRAPLAEDMFRVAKTICPRGDEFEHSEIFE 477          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|299470964|emb|CBN79948.1| (Pseudouridine synthase, RluD [Ectocarpus siliculosus])

HSP 1 Score: 244.202 bits (622), Expect = 1.780e-70
Identity = 158/391 (40.41%), Postives = 207/391 (52.94%), Query Frame = 0
Query:  142 MFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEG--------------RPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEW 518
            M      E   R+D  L  R+   SRS    L   G V V G  A+KS+K+ EG E+ VR   + E    ++ EDIPLD+LYED+ +IAV+K  GMVVHPAPG+ NGTFVNAL+ H+ + G +   +  +E               RPG+VHRLDKGT+GVLLAAK                           NP+ Q  + ++                Q R S        SY    V N    +  D  IG +  + + ++      +    +  R+A S V T+AFDG+LSV EV IETGRTHQIRVHLQHRR PVLGDE+YGN  WN R R+  G+TRP+LHA  L   HP TG+ + L AP+P D+ +V   I+PQV+  E+ EW
Sbjct:  105 MLTVEEGEGGKRLDSFLGARMPEQSRSYFGGLCQLGMVLVGGKTAKKSVKVEEGQEVEVRFIISPE--LSLQGEDIPLDILYEDDEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKSGADGNGLGVAEAAFQSVPDGEHNPSLRPGIVHRLDKGTTGVLLAAK---------------------------NPTMQAKLAEL--------------FAQRRISK-------SYLAVCVGNPGKAATIDVPIGRHPRDRQRMV---AVPTIQPNIRSRRALSVVTTVAFDGKLSVAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNNDWNRRLRQSTGLTRPLLHARSLEFKHPNTGEVVSLAAPLPSDVEAVVRRIYPQVED-EHPEW 441          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|1208942415|ref|WP_088205723.1| (RluA family pseudouridine synthase [Chlamydiales bacterium SCGC AG-110-P3])

HSP 1 Score: 237.654 bits (605), Expect = 3.119e-70
Identity = 147/358 (41.06%), Postives = 196/358 (54.75%), Query Frame = 0
Query:  143 FVANTSESLIRVDRLLTQRLKGH-SRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDM 499
            FV + SE+  R+D+LL+QR +G  SRS    L+    V +NG P +K ++   GDE+ V    T E    +  E++PL+VLYED+H+I +NK+ GMVVHPAPGN  GTFVNALL H     G+  +   S  RPG+VHRLDK TSG L+AAK       L   F+ R++ K Y+A+ +GNP      +DVPIGRHP  R++MAV               S  + AV +Y                                           TLA   RLSVV++ +ETGRTHQIRVHL+HR  P+LGD +YG    N    R++  +R MLHA RL   HP+TG+ L ++AP+P DM
Sbjct:    9 FVVSDSEAGSRLDKLLSQRYQGQQSRSYFQKLIRNELVLLNGRPVKKQVRPESGDEVEVEFALTPE--VNLHPENLPLEVLYEDDHLIIINKSAGMVVHPAPGNWTGTFVNALLYHC----GDSFQAEASL-RPGIVHRLDKNTSGCLVAAKNLHVQQRLVELFSLRKIYKEYIAVCVGNPGD--GTVDVPIGRHPVHRKQMAVI-------------ESGGRHAVTHYS------------------------------------------TLAHKDRLSVVKLVLETGRTHQIRVHLRHRGMPILGDCVYGTEAMN----RQYSASRQMLHAYRLRFMHPITGEKLDVMAPIPVDM 298          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|1206879396|emb|SCA62605.1| (Uncharacterized RNA pseudouridine synthase Cpar_0723 [Chlamydiales bacterium SCGC AG-110-P3])

HSP 1 Score: 237.654 bits (605), Expect = 5.590e-70
Identity = 147/358 (41.06%), Postives = 196/358 (54.75%), Query Frame = 0
Query:  143 FVANTSESLIRVDRLLTQRLKGH-SRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDM 499
            FV + SE+  R+D+LL+QR +G  SRS    L+    V +NG P +K ++   GDE+ V    T E    +  E++PL+VLYED+H+I +NK+ GMVVHPAPGN  GTFVNALL H     G+  +   S  RPG+VHRLDK TSG L+AAK       L   F+ R++ K Y+A+ +GNP      +DVPIGRHP  R++MAV               S  + AV +Y                                           TLA   RLSVV++ +ETGRTHQIRVHL+HR  P+LGD +YG    N    R++  +R MLHA RL   HP+TG+ L ++AP+P DM
Sbjct:   24 FVVSDSEAGSRLDKLLSQRYQGQQSRSYFQKLIRNELVLLNGRPVKKQVRPESGDEVEVEFALTPE--VNLHPENLPLEVLYEDDHLIIINKSAGMVVHPAPGNWTGTFVNALLYHC----GDSFQAEASL-RPGIVHRLDKNTSGCLVAAKNLHVQQRLVELFSLRKIYKEYIAVCVGNPGD--GTVDVPIGRHPVHRKQMAVI-------------ESGGRHAVTHYS------------------------------------------TLAHKDRLSVVKLVLETGRTHQIRVHLRHRGMPILGDCVYGTEAMN----RQYSASRQMLHAYRLRFMHPITGEKLDVMAPIPVDM 313          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|1084501684|gb|OGN64337.1| (23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9])

HSP 1 Score: 232.261 bits (591), Expect = 4.284e-68
Identity = 147/361 (40.72%), Postives = 188/361 (52.08%), Query Frame = 0
Query:  141 FMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEG--RPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDM 499
            F+FV    E + R+D LL  R   HSR+    L++ GFV +NG P +K +   EGDEI V   AT E  A +E E IPLD+LYEDEH++AVNK  GMVVHPAPG+ +GTFVNALL H         E+  S    RPG+VHRLDK TSGVL+AAKT  AH  L   F+ RR+ K YLAI  G P  Q   I++PIGRHP  R+ MA     R + T         Q A  N                                                  + S+V +  +TGRTHQ+RVHL+H   P++GD +YG    + +        R +LHA RL  +HP+T  P++L AP+P DM
Sbjct:   13 FLFVTAEEEGM-RIDTLLGCRFPDHSRTYFQYLIESGFVLLNGEPVKKRILPEEGDEIEVCFQATAE--ASLEPESIPLDILYEDEHILAVNKPAGMVVHPAPGHWSGTFVNALLGHC-------REIAPSSDPLRPGIVHRLDKDTSGVLIAAKTLIAHQKLIEMFSSRRIEKLYLAICYGRP--QNGTINIPIGRHPVHRKEMAALPDGREAITE-------VQTAAFN-------------------------------------------------EKTSLVLLRPKTGRTHQLRVHLKHIGCPIVGDPVYGKKTDSPK--------RQLLHAYRLAFEHPITRAPIKLTAPLPQDM 297          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|692304075|ref|WP_032125019.1| (MULTISPECIES: pseudouridine synthase [Chlamydiia])

HSP 1 Score: 231.876 bits (590), Expect = 6.611e-68
Identity = 143/366 (39.07%), Postives = 191/366 (52.19%), Query Frame = 0
Query:  153 RVDRLLTQRL-KGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEE 517
            R+D++L +R  + HSR+    L+D   + VNGSP +K  K+  GDE+ V+  AT E  A++  E IPL ++YED+H++ VNK  GMVVHPAPGN +GTFVNALL H  +       V  +  RPG+VHRLDK TSG+L+AAKT      L   FA R+V K YLA+ IG P      I  PIGRHP  R++MA+    R       P  S+                                                  KTL ++G+LS+V+V I TGRTHQIRVHL+++  PVLGD LYG    N      +     +LHA +L   HPVT + L   AP PP+M+     I P     ++E+
Sbjct:   22 RLDKVLARRFSEKHSRTYFQYLIDEHLILVNGSPVKKRTKLQAGDEVEVQFAATPE--ADLSPEAIPLTIVYEDDHLLVVNKPAGMVVHPAPGNWSGTFVNALLYHCQQL-----PVPPNTNRPGIVHRLDKDTSGLLIAAKTLEMQQKLIELFASRQVYKEYLAVCIGRPPD--GEIQAPIGRHPILRKQMAIVPSGR-------PAISFC-------------------------------------------------KTLGWNGKLSLVQVVIATGRTHQIRVHLKYKGTPVLGDALYGQNPLNL----YYSAPHQLLHAAKLRFQHPVTKEQLEFFAPPPPEMMRFIRRIIPDSSYLQDEK 318          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|971147030|emb|CUI16035.1| (Ribosomal large subunit pseudouridine synthase D [Protochlamydia naegleriophila])

HSP 1 Score: 231.876 bits (590), Expect = 7.931e-68
Identity = 143/366 (39.07%), Postives = 191/366 (52.19%), Query Frame = 0
Query:  153 RVDRLLTQRL-KGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEE 517
            R+D++L +R  + HSR+    L+D   + VNGSP +K  K+  GDE+ V+  AT E  A++  E IPL ++YED+H++ VNK  GMVVHPAPGN +GTFVNALL H  +       V  +  RPG+VHRLDK TSG+L+AAKT      L   FA R+V K YLA+ IG P      I  PIGRHP  R++MA+    R       P  S+                                                  KTL ++G+LS+V+V I TGRTHQIRVHL+++  PVLGD LYG    N      +     +LHA +L   HPVT + L   AP PP+M+     I P     ++E+
Sbjct:   21 RLDKVLARRFSEKHSRTYFQYLIDEHLILVNGSPVKKRTKLQAGDEVEVQFAATPE--ADLSPEAIPLTIVYEDDHLLVVNKPAGMVVHPAPGNWSGTFVNALLYHCQQL-----PVPPNTNRPGIVHRLDKDTSGLLIAAKTLEMQQKLIELFASRQVYKEYLAVCIGRPPD--GEIQAPIGRHPILRKQMAIVPSGR-------PAISFC-------------------------------------------------KTLGWNGKLSLVQVVIATGRTHQIRVHLKYKGTPVLGDALYGQNPLNL----YYSAPHQLLHAAKLRFQHPVTKEQLEFFAPPPPEMMRFIRRIIPDSSYLQDEK 317          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|1084492106|gb|OGN55551.1| (23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39] >gi|1084493689|gb|OGN57052.1| 23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_45_9] >gi|1084497018|gb|OGN60065.1| 23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_44_59] >gi|1084503821|gb|OGN66238.1| 23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPLOWO2_01_FULL_44_52] >gi|1084506198|gb|OGN68510.1| 23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_45_22] >gi|1084507874|gb|OGN70137.1| 23S rRNA pseudouridylate synthase [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20])

HSP 1 Score: 225.713 bits (574), Expect = 1.347e-65
Identity = 144/360 (40.00%), Postives = 192/360 (53.33%), Query Frame = 0
Query:  140 QFMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDM 499
            +F+ +++  E L R+D+LL  R  GHSR+    LL+ G V +NG   +K     EGDEI V   AT E  A +E E IPLD+LYEDEH++A+NK  GMVVHPAPG+ + TFVNALLAH       ++ +     RPG+VHRLDK T+GVLLAAKT  AH  L   F+ R++ K YLA+  G P +  A+I+VPIGRHP  R+ MAV    R + T         Q A  N                +   L++ +       P TGR                          THQ+RVHL+H  +P++GD LY   + + R          +LHA RL   HPVT  P+RL+AP+P D+
Sbjct:    8 EFLLISSREEGL-RIDKLLANRFPGHSRTYFQHLLELGCVLINGERVKKKTIPEEGDEIEVCFQATPE--ASLEPEHIPLDILYEDEHILAINKPAGMVVHPAPGHWSKTFVNALLAHCQHLAPGVDPL-----RPGIVHRLDKDTTGVLLAAKTTIAHQRLIELFSTRQMKKLYLAVCHGKPCN--ALINVPIGRHPVHRKEMAVLSDGREAITE-------VQVAAWN----------------DKFSLVLAK-------PQTGR--------------------------THQVRVHLKHAGSPIVGDPLYSTGELHDRQ---------LLHAYRLEFQHPVTKAPMRLIAPIPTDL 292          
BLAST of EWM26704.1 vs. NCBI_GenBank
Match: gi|736384064|ref|WP_034408404.1| (pseudouridine synthase [Deinococcus murrayi])

HSP 1 Score: 208.379 bits (529), Expect = 7.219e-59
Identity = 145/355 (40.85%), Postives = 181/355 (50.99%), Query Frame = 0
Query:  153 RVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARK-SLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEG----RPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAV-IDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLS 501
            R+D +L   L G SRS V   +  G V V G PA K SLK+  G+ + VR     +  A +  E +PLDVLYEDEH+IAVNK PGMV HPAPG  +GT VNALL  +      + E  G+EG    RPG+VHRLDK TSGV++ AKT  AHA L++AF +R   KTYLAI+ G   ++G V ++ PIGRHP  RQRM V                          G S  + +  +          GR                          L +V     TGRTHQIRVHL H  +P+LGD +YG A           + R  LHA  L + HP TG PL L APVP D+L+
Sbjct:   16 RLDAVLAD-LTGVSRSQVAGWIAGGHVEVGGQPATKASLKLRGGEALSVRPPPPPD--ATIAPEQVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRL-----TLPEQPGAEGPDGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRDTRKTYLAIAAGTWRAEGPVTVNAPIGRHPTARQRMTVG-------------------------GASPREAQTRFTPLAAHPDGHGR-------------------------TLVLVRAQPRTGRTHQIRVHLAHLGSPLLGDPVYGRASAV--------MPRHALHAHFLTLPHPATGKPLHLHAPVPDDLLT 304          
The following BLAST results are available for this feature:
BLAST of EWM26704.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108792|gb|EWM26704.1|0.000e+0100.00pseudouridine family [Nannochloropsis gaditana][more]
gi|1210511732|dbj|GAX29216.1|5.259e-7140.6223S rRNA pseudouridine1911/1915/1917 synthase [Fis... [more]
gi|299470964|emb|CBN79948.1|1.780e-7040.41Pseudouridine synthase, RluD [Ectocarpus siliculos... [more]
gi|1208942415|ref|WP_088205723.1|3.119e-7041.06RluA family pseudouridine synthase [Chlamydiales b... [more]
gi|1206879396|emb|SCA62605.1|5.590e-7041.06Uncharacterized RNA pseudouridine synthase Cpar_07... [more]
gi|1084501684|gb|OGN64337.1|4.284e-6840.7223S rRNA pseudouridylate synthase [Chlamydiae bact... [more]
gi|692304075|ref|WP_032125019.1|6.611e-6839.07MULTISPECIES: pseudouridine synthase [Chlamydiia][more]
gi|971147030|emb|CUI16035.1|7.931e-6839.07Ribosomal large subunit pseudouridine synthase D [... [more]
gi|1084492106|gb|OGN55551.1|1.347e-6540.0023S rRNA pseudouridylate synthase [Chlamydiae bact... [more]
gi|736384064|ref|WP_034408404.1|7.219e-5940.85pseudouridine synthase [Deinococcus murrayi][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3950rna3950Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications