EWM30256.1, cds394 (CDS) Nannochloropsis gaditana

Overview
NameEWM30256.1
Unique Namecds394
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:978925..979169 -
Alignment locationCM002455.1:978592..978657 -
Alignment locationCM002455.1:978316..978519 -
Alignment locationCM002455.1:977933..978208 -
Alignment locationCM002455.1:977357..977801 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30256.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g91.1773.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:978925..979169 -
CM002455.1supercontigCM002455.1:978592..978657 -
CM002455.1supercontigCM002455.1:978316..978519 -
CM002455.1supercontigCM002455.1:977933..978208 -
CM002455.1supercontigCM002455.1:977357..977801 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|585112915|gb|EWM30256.1| (hypothetical protein Naga_100003g91 [Nannochloropsis gaditana])

HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query:    1 MLKQQKRGHMSCCLPGCVSRRLICLLVSSTVLGAAGYFGTSASLRQRHAPDFAGFQGTKRLLSSPNHKIVTSIGAAITSIEKMAGNGEDGKKTGRASGDVRSGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAEVMADIALAEAFMGRSKAGKEGRKQRRGEEALELVRELFRPPDTRLPARVSVRR 411
            MLKQQKRGHMSCCLPGCVSRRLICLLVSSTVLGAAGYFGTSASLRQRHAPDFAGFQGTKRLLSSPNHKIVTSIGAAITSIEKMAGNGEDGKKTGRASGDVRSGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAEVMADIALAEAFMGRSKAGKEGRKQRRGEEALELVRELFRPPDTRLPARVSVRR
Sbjct:    1 MLKQQKRGHMSCCLPGCVSRRLICLLVSSTVLGAAGYFGTSASLRQRHAPDFAGFQGTKRLLSSPNHKIVTSIGAAITSIEKMAGNGEDGKKTGRASGDVRSGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAEVMADIALAEAFMGRSKAGKEGRKQRRGEEALELVRELFRPPDTRLPARVSVRR 411          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|298715146|emb|CBJ27834.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 250.751 bits (639), Expect = 5.496e-76
Identity = 129/238 (54.20%), Postives = 162/238 (68.07%), Query Frame = 0
Query:  106 LQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLD--------RTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSE--SRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEI 333
            ++V+TDIDDTVKSSG  RL G+ LGGID QY+RG +YPG FQF+LELSR+ VP  +EP  VAVLTARAREF FALE+  +H++ R +   G  NG++ WG G VLYGSVKEWVC SRK  RK RNF  L   D              Y+F+GDTGE D +AGE M  ++P R++A+F+H VS+   +   P P DR +  VPV+YFRTYVGAAVKA ELGL+   G+E V+    E +
Sbjct:   96 VRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYRRGVFYPGVFQFSLELSRYRVPSWQEPLSVAVLTARAREFLFALEIGDTHEITREFRQCGERNGIKKWGRGPVLYGSVKEWVCPSRKSERKARNFGFLLEDDEKGGRGRPSGAEGGYIFIGDTGEGDPRAGEIMSAEHPDRMRAVFLHVVSDGPQQGKVPVPMDRVVNAVPVVYFRTYVGAAVKAVELGLMDKKGLENVITAAKEAM 333          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|1072231955|gb|OEU16687.1| (hypothetical protein FRACYDRAFT_185881 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 247.669 bits (631), Expect = 6.975e-76
Identity = 125/262 (47.71%), Postives = 174/262 (66.41%), Query Frame = 0
Query:  101 RSGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGV--PEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRT-DYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPP-PPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAE 358
            R+ R  QVI+D+DDT+KSSGG+ + G+ALGGID QY RG +YPG  +F L+LS + +   +   PA +A+LTARA EFK ALE+K   K+     +AG   G+EGWGVG VLYGSV EW+ Q RKGLRKF NFE L  QD       Y++VGD GELD +AGE+M+R+YP  +KA+F+H V++    PP  P  + +   P+++FRTYVGAAV A +LGL+   G+++V+   +E++      + + K  RK  + AE + E
Sbjct:   57 RTHRFTQVISDVDDTLKSSGGVNVGGVALGGIDVQYGRGDFYPGVAEFMLQLSLYKLLQQDSNYPANIAILTARAEEFKAALEIKDGSKLSIALRSAGEKAGIEGWGVGPVLYGSVAEWIIQDRKGLRKFTNFERLMQQDPAGVIFQYIYVGDVGELDQEAGETMVREYPEVVKAVFLHVVTDQADVPPIIPAPKFINGRPIVFFRTYVGAAVDAVQLGLMNLDGLQSVINAAIEKLSDVPETSDKWKDIRKDLSRAEILFE 318          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|1210515511|dbj|GAX25590.1| (hypothetical protein FisN_28Hh061 [Fistulifera solaris])

HSP 1 Score: 234.572 bits (597), Expect = 2.716e-71
Identity = 122/221 (55.20%), Postives = 152/221 (68.78%), Query Frame = 0
Query:  107 QVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRL-DRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVV 326
            QVI+D+DDT+KSSGGL + G+ALGG+D QY+RG  YPG  +F  +LS   V     PA+VA+LTARA EFK ALELK S  + R +A AG   GV GWG+G VLYGSV EWV Q RKGLRKF NFE L  QD   +   YV+VGDTGELD QA E+M+R+YP  ++A+F+H VS        P  + +   PVI+FRTYVGAA+ A ELGL+   G+  V+
Sbjct:   28 QVISDVDDTLKSSGGLNVAGVALGGVDVQYERGVVYPGVAEFMFQLSSNNVAT---PAKVAILTARAEEFKAALELKASSSLARKFAQAGERAGVSGWGIGPVLYGSVAEWVIQDRKGLRKFTNFERLLQQDPTGEVLRYVYVGDTGELDQQAAETMLREYPEIVQAVFLHVVSGELGDVFIPPPKLINGRPVIFFRTYVGAALAAVELGLMPREGLVQVI 245          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|1210511753|dbj|GAX29237.1| (hypothetical protein FisN_28Lh061 [Fistulifera solaris])

HSP 1 Score: 236.498 bits (602), Expect = 4.052e-71
Identity = 125/236 (52.97%), Postives = 157/236 (66.53%), Query Frame = 0
Query:   99 DVRSGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRL-DRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEI 333
            D  S    QVI+D+DDT+KSSGGL + G+ALGGID QY+RG  YPG  +F  +LS   V     PA+VA+LTARA EFK ALELK S  + R +A AG   GV GWG+G VLYGSV EWV Q RKGLRKF NFE L  QD   +   YV+VGDTGELD QA E+M+R+YP  ++A+F+H VS        P  + +   PVI+FRTYVGAA+ A ELGL+   G+  V+   ++ +
Sbjct:   86 DAFSNFYTQVISDVDDTLKSSGGLNVAGVALGGIDVQYERGAVYPGVAEFMFQLSSNNVDT---PAKVAILTARAEEFKAALELKASSSLARKFAQAGERAGVSGWGIGPVLYGSVAEWVIQDRKGLRKFTNFERLLQQDPTGEVLRYVYVGDTGELDQQAAETMLREYPEIVQAVFLHVVSGELGDVFIPAPKFINGRPVIFFRTYVGAALAAVELGLMPREGLVQVIDAAMQSL 318          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|551612886|ref|XP_005787450.1| (hypothetical protein EMIHUDRAFT_252700 [Emiliania huxleyi CCMP1516] >gi|485640829|gb|EOD35021.1| hypothetical protein EMIHUDRAFT_252700 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 238.424 bits (607), Expect = 6.375e-71
Identity = 132/245 (53.88%), Postives = 157/245 (64.08%), Query Frame = 0
Query:   92 KTGRASGDVRSGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRTDYVFVGDTG--ELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIE 334
            + G A G +  G   QV+TDIDDTVKSSGGL L G+ LGG+DT Y RG +YPG FQF LELS   +P GR PARVAVLTARA EFK  LE+K S K+C  Y  A        WGVG VLYGSV+EWVCQ RKG RK  NFE LRA+    R  ++FVGD G  E DL A E + R++P  ++A+FMH VS    + P P D  L  VP+ YFRTY  AA KA +LGL+G       +AR L+  E
Sbjct:   25 RRGAARGGLFGGGDTQVVTDIDDTVKSSGGLSLAGIPLGGVDTSYARGSFYPGVFQFGLELSCARLPPGRPPARVAVLTARAVEFKALLEIKQSSKLCVRYRDAAQRRLRAPWGVGPVLYGSVQEWVCQERKGWRKAANFELLRAEAPAGRR-FIFVGDNGASEKDLDAAERITRRHPGLVRAVFMHAVSPGATAAPLPPDGELHGVPLRYFRTYASAAAKAHQLGLIG----RGALARVLDSCE 264          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|551666714|ref|XP_005836118.1| (hypothetical protein GUITHDRAFT_136302 [Guillardia theta CCMP2712] >gi|428180270|gb|EKX49138.1| hypothetical protein GUITHDRAFT_136302 [Guillardia theta CCMP2712])

HSP 1 Score: 233.417 bits (594), Expect = 1.788e-69
Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 0
Query:  106 LQVITDIDDTVKSSGGLRL---MGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVG----------TVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSES------RPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLG 318
            +QVITDIDDTVKSSGG+RL   +G ALGGIDTQYKRG +YPG FQF LEL+ FG+P  +EPA +AVLTARARE K  L LKP  K+C  Y  A A    E WG+G          TVLYGSV EW+ Q RKG RKF NF+ L+  +  +RT YV VGDTGE D + GE M    P  +K +F H VSE           P P DR L  VPV YFRTYVGAA KA  + L+G
Sbjct:   58 VQVITDIDDTVKSSGGVRLFWRVGPALGGIDTQYKRGDFYPGVFQFGLELASFGLPPNKEPAPLAVLTARARELKLFLALKPKTKLCVQYVKA-ATETFESWGIGSPRWGVDCERTVLYGSVMEWILQFRKGWRKFDNFKKLKEMND-ERTRYVLVGDTGEYDFECGERMAEFCPELVKGMFFHVVSEHDWKEAGEDGIPMPIDRYLNGVPVCYFRTYVGAARKAFRIKLIG 287          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|223999625|ref|XP_002289485.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974693|gb|EED93022.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 230.72 bits (587), Expect = 6.975e-69
Identity = 121/262 (46.18%), Postives = 166/262 (63.36%), Query Frame = 0
Query:  105 ILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVP-------------------EGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGV---EGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRT-DYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSP------PPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGG 337
            + QV++DIDDT+KSSGG+ + G++LGGID QY RG++YPG FQF  ELS + +                    +G  P +VAVLTARA EFK ALE+K   K+ + +   G ++ V   + WGVG VLYGSV EW+ Q +KGLRKF NFE L  QD   R   Y++VGDTGELD +AGE+M+R+YP  ++A+F+H VS   PS       P P  + +   P+++FRTYVGAA KA +LGL+   G+  V+ +  +E+E  G
Sbjct:   59 LTQVVSDIDDTLKSSGGVTIAGVSLGGIDVQYARGEFYPGVFQFMWELSLYSITLNQQYYDDFTSEEDDSSLLQGLTPPKVAVLTARAEEFKAALEIKDESKLAQAFLKTGESSEVCPTKNWGVGPVLYGSVNEWIVQYKKGLRKFNNFERLLEQDPTGRILQYIYVGDTGELDQEAGETMLREYPEVVQAVFLHVVSFDSPSAYPSSGLPIPPSKLINGRPLVFFRTYVGAAAKATQLGLMEGDGLMRVMEKAEKELEERG 320          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|219129750|ref|XP_002185044.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403539|gb|EEC43491.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 225.713 bits (574), Expect = 5.481e-67
Identity = 118/237 (49.79%), Postives = 156/237 (65.82%), Query Frame = 0
Query:  107 QVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGV---PEGREPA------RVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRT-DYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEI 333
            QVI+D+DDT+KSSGG+ + G+ALGGID QY RG+ YPG  +F L++S  GV   P    PA      ++A+LTARA EFK AL+LK    +      AG   GV  WGVG VLYGSV EW+ Q RKG RKF NFE L  QD       YV+VGDTGELD +AGE+M+R+YP  +KA+F+H V++   S   P  + +   PVI+FRTYVGAAV A +LG +   G+++V+A + + +
Sbjct:   86 QVISDVDDTLKSSGGVNVAGVALGGIDVQYPRGEMYPGVAEFMLQMS-LGVASSPTVSNPALAVAPPKIAILTARAEEFKIALQLKDDSPLVMALRQAGETAGVSNWGVGPVLYGSVAEWIAQDRKGFRKFTNFERLLQQDPTGIIFQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVADKIGSVTVPPPKIINGRPVIFFRTYVGAAVAAVQLGFMSMDGLDSVIAASCQRL 321          
BLAST of EWM30256.1 vs. NCBI_GenBank
Match: gi|397613403|gb|EJK62196.1| (hypothetical protein THAOC_17201 [Thalassiosira oceanica])

HSP 1 Score: 206.453 bits (524), Expect = 4.573e-59
Identity = 123/288 (42.71%), Postives = 162/288 (56.25%), Query Frame = 0
Query:  105 ILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRG--QYYPGAFQFALELSRFGVP-------EGRE-------PARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRT-DYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPR------DRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAEVMADIALAEAF 369
            + QV++DIDDT+KSSGG+ + G+ALGGID QY RG  Q YPG  QF  ELS + V        E R+       P ++AVLTARA EFK ALE+K + K+          +    WG+G VLYGSV EWV Q +KGLRKF NFE L  QD   +   YVF GD GELD +AGE+++R+YP  + A+F+H VS   PS  PP        R +   P+++FRTYVGAA  A + GLL P      + R ++E E    +  E +   K       + + +  IA    F
Sbjct:   39 LTQVVSDIDDTLKSSGGIEVAGIALGGIDVQYSRGTEQLYPGVAQFFYELSCYPVTKNIRHHEEHRDSPSFFLSPPKIAVLTARAEEFKAALEIKDNSKLALKLTNV---DPTSNWGIGPVLYGSVSEWVIQEKKGLRKFNNFERLLRQDPTGKIMRYVFCGDVGELDEEAGETILREYPEVVLAVFLHVVSAEPPSNYPPDGLLIPPSRLINGRPLVHFRTYVGAANSALKFGLLEPDA----LIRIIKEAESDLKSLNESETSSKWVDLRRDINDALVTIATCIIF 319          
The following BLAST results are available for this feature:
BLAST of EWM30256.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112915|gb|EWM30256.1|0.000e+0100.00hypothetical protein Naga_100003g91 [Nannochlorops... [more]
gi|298715146|emb|CBJ27834.1|5.496e-7654.20conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072231955|gb|OEU16687.1|6.975e-7647.71hypothetical protein FRACYDRAFT_185881 [Fragilario... [more]
gi|1210515511|dbj|GAX25590.1|2.716e-7155.20hypothetical protein FisN_28Hh061 [Fistulifera sol... [more]
gi|1210511753|dbj|GAX29237.1|4.052e-7152.97hypothetical protein FisN_28Lh061 [Fistulifera sol... [more]
gi|551612886|ref|XP_005787450.1|6.375e-7153.88hypothetical protein EMIHUDRAFT_252700 [Emiliania ... [more]
gi|551666714|ref|XP_005836118.1|1.788e-6955.60hypothetical protein GUITHDRAFT_136302 [Guillardia... [more]
gi|223999625|ref|XP_002289485.1|6.975e-6946.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219129750|ref|XP_002185044.1|5.481e-6749.79predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397613403|gb|EJK62196.1|4.573e-5942.71hypothetical protein THAOC_17201 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna394rna394Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications