EWM26623.1, cds3937 (CDS) Nannochloropsis gaditana

Overview
NameEWM26623.1
Unique Namecds3937
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:481617..482871 +
Alignment locationCM002462.1:482966..483052 +
Alignment locationCM002462.1:483120..483256 +

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Properties
Property NameValue
Protein idEWM26623.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100001g177.8134.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:481617..482871 +
CM002462.1supercontigCM002462.1:482966..483052 +
CM002462.1supercontigCM002462.1:483120..483256 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
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BLAST of EWM26623.1 vs. NCBI_GenBank
Match: gi|585108711|gb|EWM26623.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0
Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 0 
Query:    1 MAQTPELSQHQHTSLTLSVMTTVLDQNEDILLAISESQRLGENVRAAKYQRQLQENLLVLTQLCDSQEYYPKSFREMALKKLPRQRKIATEMPVPSMDVLHCVDGANITHRQAQQRVSPLCRQPQAFQEQQKSCLGARNDTSCNKSALSPSVIDGDHISLQRLHTAQPLSMSDAADPLSMDRHKAQLTLQSQSLNTGGGEMLKMAQASPQDDAMQLMQQHILHQQQMLQQHQQHYQAIIHQQELLDERQRERIEQGDSEVLAKKSLSSCSGANAGDATPRGGRSALVQTPLGLMKVQLVGNNVQEAMNLPVVGQMNFDPSLLQSVFRTPEQSLQMTQAQAQGLQAQIQSQQQPWYHPQHSQGGFQQLDVLHNPSQNPQSILNPLPSLPSFSTPADVAPQSVTNPSSITGNNYLDHITSLVRKNVRGTYWSSIEEGRLLHAVQLYGESDFEQIAQFVGTKSRTQVRIRLRKHAEGSLPIMARSPLQPIGASFG 492
            MAQTPELSQHQHTSLTLSVMTTVLDQNEDILLAISESQRLGENVRAAKYQRQLQENLLVLTQLCDSQEYYPKSFREMALKKLPRQRKIATEMPVPSMDVLHCVDGANITHRQAQQRVSPLCRQPQAFQEQQKSCLGARNDTSCNKSALSPSVIDGDHISLQRLHTAQPLSMSDAADPLSMDRHKAQLTLQSQSLNTGGGEMLKMAQASPQDDAMQLMQQHILHQQQMLQQHQQHYQAIIHQQELLDERQRERIEQGDSEVLAKKSLSSCSGANAGDATPRGGRSALVQTPLGLMKVQLVGNNVQEAMNLPVVGQMNFDPSLLQSVFRTPEQSLQMTQAQAQGLQAQIQSQQQPWYHPQHSQGGFQQLDVLHNPSQNPQSILNPLPSLPSFSTPADVAPQSVTNPSSITGNNYLDHITSLVRKNVRGTYWSSIEEGRLLHAVQLYGESDFEQIAQFVGTKSRTQVRIRLRKHAEGSLPIMARSPLQPIGASFG
Sbjct:    1 MAQTPELSQHQHTSLTLSVMTTVLDQNEDILLAISESQRLGENVRAAKYQRQLQENLLVLTQLCDSQEYYPKSFREMALKKLPRQRKIATEMPVPSMDVLHCVDGANITHRQAQQRVSPLCRQPQAFQEQQKSCLGARNDTSCNKSALSPSVIDGDHISLQRLHTAQPLSMSDAADPLSMDRHKAQLTLQSQSLNTGGGEMLKMAQASPQDDAMQLMQQHILHQQQMLQQHQQHYQAIIHQQELLDERQRERIEQGDSEVLAKKSLSSCSGANAGDATPRGGRSALVQTPLGLMKVQLVGNNVQEAMNLPVVGQMNFDPSLLQSVFRTPEQSLQMTQAQAQGLQAQIQSQQQPWYHPQHSQGGFQQLDVLHNPSQNPQSILNPLPSLPSFSTPADVAPQSVTNPSSITGNNYLDHITSLVRKNVRGTYWSSIEEGRLLHAVQLYGESDFEQIAQFVGTKSRTQVRIRLRKHAEGSLPIMARSPLQPIGASFG 492
The following BLAST results are available for this feature:
BLAST of EWM26623.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108711|gb|EWM26623.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3947rna3947Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications