EWM26620.1, cds3930 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26620.1
Unique Name	cds3930
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:463443..463459 +
Alignment location	CM002462.1:463572..463768 +
Alignment location	CM002462.1:463937..465897 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26620.1
Product	protein of unknown function DUF4211
Orig transcript id	gnl\|cribi\|Naga_100001g184.8131.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:463443..463459 +
CM002462.1	supercontig	CM002462.1:463572..463768 +
CM002462.1	supercontig	CM002462.1:463937..465897 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR025451	DUF4211

Homology

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BLAST of EWM26620.1 vs. NCBI_GenBank
Match: gi|585108708|gb|EWM26620.1| (protein of unknown function DUF4211 [Nannochloropsis gaditana])

HSP 1 Score: 1442.56 bits (3733), Expect = 0.000e+0
Identity = 724/724 (100.00%), Postives = 724/724 (100.00%), Query Frame = 0

Query:    1 MAAGGSFTEVAHFPGVKFRHSIAAWNADMPFRARKDETFSDDEEDEEEIVVKRVRNRLSESTTPGITLIASGSSRRRRVLLDDEEEEDEEEGHIEEERKGTKHIVGRFNRSLSATKGRRASSLSKDGRVSEDEEGSEDLDDFIVPDDYEEDDEWDQHRRDKRRKGGVLKSRRTKSIKDIMKKDLSSRSRRKRKSMDDEEEEEEEEEGRYRGDMSDFIVDDNYVEMMDEKESRSSVKQTQTKRDRAPPRAKGQRQPVNKEHGREEGRAGREAAPIKVHASETAHRRKIVLDSDDEDNEAPGEYKGGDRNGARGEEEKEEEEEEEEEKEEEEEEEKEEEEEEEEEEEEDDSESSVDETLIHMRAYAKMALEEEERMPLFMTRRKMSLREAFALYVEMLARSLADPGFRSGMRRHPTGQVYGRFSNAKKFLEDQLCTRRESLLGSMQWRPLWVEELRSRPRFQWLEAIGERPDRCMICGRRRHPCAFQVLLSGPRYDSRVLWESRNWESALPCSVEALGTPEEAEEERQREEKWEEEEARRREEEGEEEEEGVREGRSNGWWDAGSTCQYKSLCYSRMTHYKYCLLRRIARRLKGFATGGARSRRGQRAREGGPGGPRPRRNAAGSWAVVLPVAELMQEAGWVEAEFERMKTLLDLVEGMMMDKRASASKTLERIEHLWTDEEGGGFAGGRGEGQRREKREDQECEEEDEEEGLVFVPGRRGYNPLV 724
            MAAGGSFTEVAHFPGVKFRHSIAAWNADMPFRARKDETFSDDEEDEEEIVVKRVRNRLSESTTPGITLIASGSSRRRRVLLDDEEEEDEEEGHIEEERKGTKHIVGRFNRSLSATKGRRASSLSKDGRVSEDEEGSEDLDDFIVPDDYEEDDEWDQHRRDKRRKGGVLKSRRTKSIKDIMKKDLSSRSRRKRKSMDDEEEEEEEEEGRYRGDMSDFIVDDNYVEMMDEKESRSSVKQTQTKRDRAPPRAKGQRQPVNKEHGREEGRAGREAAPIKVHASETAHRRKIVLDSDDEDNEAPGEYKGGDRNGARGEEEKEEEEEEEEEKEEEEEEEKEEEEEEEEEEEEDDSESSVDETLIHMRAYAKMALEEEERMPLFMTRRKMSLREAFALYVEMLARSLADPGFRSGMRRHPTGQVYGRFSNAKKFLEDQLCTRRESLLGSMQWRPLWVEELRSRPRFQWLEAIGERPDRCMICGRRRHPCAFQVLLSGPRYDSRVLWESRNWESALPCSVEALGTPEEAEEERQREEKWEEEEARRREEEGEEEEEGVREGRSNGWWDAGSTCQYKSLCYSRMTHYKYCLLRRIARRLKGFATGGARSRRGQRAREGGPGGPRPRRNAAGSWAVVLPVAELMQEAGWVEAEFERMKTLLDLVEGMMMDKRASASKTLERIEHLWTDEEGGGFAGGRGEGQRREKREDQECEEEDEEEGLVFVPGRRGYNPLV
Sbjct:    1 MAAGGSFTEVAHFPGVKFRHSIAAWNADMPFRARKDETFSDDEEDEEEIVVKRVRNRLSESTTPGITLIASGSSRRRRVLLDDEEEEDEEEGHIEEERKGTKHIVGRFNRSLSATKGRRASSLSKDGRVSEDEEGSEDLDDFIVPDDYEEDDEWDQHRRDKRRKGGVLKSRRTKSIKDIMKKDLSSRSRRKRKSMDDEEEEEEEEEGRYRGDMSDFIVDDNYVEMMDEKESRSSVKQTQTKRDRAPPRAKGQRQPVNKEHGREEGRAGREAAPIKVHASETAHRRKIVLDSDDEDNEAPGEYKGGDRNGARGEEEKEEEEEEEEEKEEEEEEEKEEEEEEEEEEEEDDSESSVDETLIHMRAYAKMALEEEERMPLFMTRRKMSLREAFALYVEMLARSLADPGFRSGMRRHPTGQVYGRFSNAKKFLEDQLCTRRESLLGSMQWRPLWVEELRSRPRFQWLEAIGERPDRCMICGRRRHPCAFQVLLSGPRYDSRVLWESRNWESALPCSVEALGTPEEAEEERQREEKWEEEEARRREEEGEEEEEGVREGRSNGWWDAGSTCQYKSLCYSRMTHYKYCLLRRIARRLKGFATGGARSRRGQRAREGGPGGPRPRRNAAGSWAVVLPVAELMQEAGWVEAEFERMKTLLDLVEGMMMDKRASASKTLERIEHLWTDEEGGGFAGGRGEGQRREKREDQECEEEDEEEGLVFVPGRRGYNPLV 724

The following BLAST results are available for this feature:

BLAST of EWM26620.1 vs. NCBI_GenBank

BLAST of EWM26620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108708\|gb\|EWM26620.1\|	0.000e+0	100.00	protein of unknown function DUF4211 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3939	rna3939	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications