EWM26590.1, cds3917 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26590.1 vs. NCBI_GenBank
Match: gi|585108678|gb|EWM26590.1| (pbs lyase heat domain protein repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1603.19 bits (4150), Expect = 0.000e+0 Identity = 793/793 (100.00%), Postives = 793/793 (100.00%), Query Frame = 0
Query: 1 MCRMQSSGAGNPSLVGFWPAFQQSQQLHLQQQAQLAHRRPQYGTARRRYKYETRLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTGDIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLSSEDEEEGEEGEGKEADEEKERENLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGRDEAGDRGREDDAGVEVPQDEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASLAAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQTLRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSMEMASISGGGGGFGDFLRASPTVVGLHHFRAFQSSSGGYRSDRQGEDEKGTGRAPIEDAKKVSAQEVKAPGFYMQLPQPSC 793
MCRMQSSGAGNPSLVGFWPAFQQSQQLHLQQQAQLAHRRPQYGTARRRYKYETRLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTGDIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLSSEDEEEGEEGEGKEADEEKERENLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGRDEAGDRGREDDAGVEVPQDEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASLAAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQTLRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSMEMASISGGGGGFGDFLRASPTVVGLHHFRAFQSSSGGYRSDRQGEDEKGTGRAPIEDAKKVSAQEVKAPGFYMQLPQPSC
Sbjct: 1 MCRMQSSGAGNPSLVGFWPAFQQSQQLHLQQQAQLAHRRPQYGTARRRYKYETRLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTGDIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLSSEDEEEGEEGEGKEADEEKERENLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGRDEAGDRGREDDAGVEVPQDEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASLAAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQTLRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSMEMASISGGGGGFGDFLRASPTVVGLHHFRAFQSSSGGYRSDRQGEDEKGTGRAPIEDAKKVSAQEVKAPGFYMQLPQPSC 793
BLAST of EWM26590.1 vs. NCBI_GenBank
Match: gi|1210186752|dbj|BAZ05807.1| (HEAT domain protein repeat-containing protein [Calothrix sp. NIES-3974]) HSP 1 Score: 64.3142 bits (155), Expect = 3.628e-7 Identity = 69/195 (35.38%), Postives = 96/195 (49.23%), Query Frame = 0
Query: 521 LPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALAT-LLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSME 714
LP+S P ++Q AT S L D +R+ A+VALG LG KAA+ V AL ++LE D V R A + +GSA +E +L++ L DE VRA AA+ LG EK A L ++KD D VR A ++AR+G+ AL + D PK AK +LA AT++ +
Sbjct: 84 LPVS-PSTENQTLATVSTLIVTLSHSD--LRYHAIVALGNLGKKAAIA--VPALIDLLEN-EDAVIRVTAIEALCKIGSA----IETVP-ALVKVLRDESVYVRAHAAFGLGCF----REKAIFAVDALIAALKDDDEWVRGNAADAIARIGKSAHHATSALIDALSD-----RNPKVRAK---ATLALATVATD 255
BLAST of EWM26590.1 vs. NCBI_GenBank
Match: gi|516258461|ref|WP_017662424.1| (hypothetical protein [Geitlerinema sp. PCC 7105]) HSP 1 Score: 65.0846 bits (157), Expect = 4.191e-7 Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = 0
Query: 537 SILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVG 671
S L + D +R ALG+LGG A + AL E L K D R AW +G +G A E A +L+ L DE++ VR++AAWALG LG+ E A++ L+ R +KD D +VR +A +L R+G
Sbjct: 844 SALVECLKDEDSGVRSEVAWALGELGG--ASETAISALVERL-KDEDSEVRSEVAWALGELGGAS----ETAISALVERLKDEDSEVRSSAAWALGELGEASE--TAISALVER-LKDEDSRVRSLAAWALGRLG 968 The following BLAST results are available for this feature:
BLAST of EWM26590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|