EWM26590.1, cds3917 (CDS) Nannochloropsis gaditana

Overview
NameEWM26590.1
Unique Namecds3917
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:434623..434634 +
Alignment locationCM002462.1:434949..437318 +

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Properties
Property NameValue
Protein idEWM26590.1
Productpbs lyase heat domain protein repeat-containing protein
Orig transcript idgnl|cribi|Naga_100001g199.8101.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:434623..434634 +
CM002462.1supercontigCM002462.1:434949..437318 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
IPR004155PBS_lyase_HEAT
Homology
BLAST of EWM26590.1 vs. NCBI_GenBank
Match: gi|585108678|gb|EWM26590.1| (pbs lyase heat domain protein repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1603.19 bits (4150), Expect = 0.000e+0
Identity = 793/793 (100.00%), Postives = 793/793 (100.00%), Query Frame = 0
Query:    1 MCRMQSSGAGNPSLVGFWPAFQQSQQLHLQQQAQLAHRRPQYGTARRRYKYETRLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTGDIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLSSEDEEEGEEGEGKEADEEKERENLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGRDEAGDRGREDDAGVEVPQDEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASLAAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQTLRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSMEMASISGGGGGFGDFLRASPTVVGLHHFRAFQSSSGGYRSDRQGEDEKGTGRAPIEDAKKVSAQEVKAPGFYMQLPQPSC 793
            MCRMQSSGAGNPSLVGFWPAFQQSQQLHLQQQAQLAHRRPQYGTARRRYKYETRLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTGDIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLSSEDEEEGEEGEGKEADEEKERENLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGRDEAGDRGREDDAGVEVPQDEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASLAAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQTLRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSMEMASISGGGGGFGDFLRASPTVVGLHHFRAFQSSSGGYRSDRQGEDEKGTGRAPIEDAKKVSAQEVKAPGFYMQLPQPSC
Sbjct:    1 MCRMQSSGAGNPSLVGFWPAFQQSQQLHLQQQAQLAHRRPQYGTARRRYKYETRLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTGDIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLSSEDEEEGEEGEGKEADEEKERENLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGRDEAGDRGREDDAGVEVPQDEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASLAAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQTLRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSMEMASISGGGGGFGDFLRASPTVVGLHHFRAFQSSSGGYRSDRQGEDEKGTGRAPIEDAKKVSAQEVKAPGFYMQLPQPSC 793          
BLAST of EWM26590.1 vs. NCBI_GenBank
Match: gi|1210186752|dbj|BAZ05807.1| (HEAT domain protein repeat-containing protein [Calothrix sp. NIES-3974])

HSP 1 Score: 64.3142 bits (155), Expect = 3.628e-7
Identity = 69/195 (35.38%), Postives = 96/195 (49.23%), Query Frame = 0
Query:  521 LPLSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALAT-LLHRSVKDADPQVRDMAVKSLARVGRVTGKRRRALGEDGGDGPAWGGRPKTHAKRRSCSLASATLSME 714
            LP+S P  ++Q  AT S L       D  +R+ A+VALG LG KAA+   V AL ++LE   D V R  A   +  +GSA    +E    +L++ L DE   VRA AA+ LG       EK   A   L  ++KD D  VR  A  ++AR+G+       AL +   D       PK  AK    +LA AT++ +
Sbjct:   84 LPVS-PSTENQTLATVSTLIVTLSHSD--LRYHAIVALGNLGKKAAIA--VPALIDLLEN-EDAVIRVTAIEALCKIGSA----IETVP-ALVKVLRDESVYVRAHAAFGLGCF----REKAIFAVDALIAALKDDDEWVRGNAADAIARIGKSAHHATSALIDALSD-----RNPKVRAK---ATLALATVATD 255          
BLAST of EWM26590.1 vs. NCBI_GenBank
Match: gi|516258461|ref|WP_017662424.1| (hypothetical protein [Geitlerinema sp. PCC 7105])

HSP 1 Score: 65.0846 bits (157), Expect = 4.191e-7
Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = 0
Query:  537 SILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVG 671
            S L    +  D  +R     ALG+LGG  A    + AL E L K  D   R   AW +G +G A     E A  +L+  L DE++ VR++AAWALG LG+  E   A++ L+ R +KD D +VR +A  +L R+G
Sbjct:  844 SALVECLKDEDSGVRSEVAWALGELGG--ASETAISALVERL-KDEDSEVRSEVAWALGELGGAS----ETAISALVERLKDEDSEVRSSAAWALGELGEASE--TAISALVER-LKDEDSRVRSLAAWALGRLG 968          
The following BLAST results are available for this feature:
BLAST of EWM26590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108678|gb|EWM26590.1|0.000e+0100.00pbs lyase heat domain protein repeat-containing pr... [more]
gi|1210186752|dbj|BAZ05807.1|3.628e-735.38HEAT domain protein repeat-containing protein [Cal... [more]
gi|516258461|ref|WP_017662424.1|4.191e-738.52hypothetical protein [Geitlerinema sp. PCC 7105][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3926rna3926Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications