EWM30327.1, cds389 (CDS) Nannochloropsis gaditana

Overview
NameEWM30327.1
Unique Namecds389
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:965101..965145 -
Alignment locationCM002455.1:964250..964312 -
Alignment locationCM002455.1:963410..964069 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30327.1
Productcoiled-coil domain-containing protein 75
Orig transcript idgnl|cribi|Naga_100003g96.1844.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:965101..965145 -
CM002455.1supercontigCM002455.1:964250..964312 -
CM002455.1supercontigCM002455.1:963410..964069 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR025239DUF4187
IPR000467G_patch_dom
Homology
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|585112986|gb|EWM30327.1| (coiled-coil domain-containing protein 75 [Nannochloropsis gaditana])

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MYERRKLKLMATAFAKAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            MYERRKLKLMATAFAKAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH
Sbjct:    1 MYERRKLKLMATAFAKAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|524893707|ref|XP_005103362.1| (PREDICTED: G patch domain-containing protein 11-like isoform X2 [Aplysia californica])

HSP 1 Score: 115.161 bits (287), Expect = 8.279e-28
Identity = 80/239 (33.47%), Postives = 117/239 (48.95%), Query Frame = 0
Query:   27 EKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLG-ETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGR---------ERSCLWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            EKGLQT LS +N G  +L+ MG+K G+GIGK+E G  +P++   K  R GLG +TER+ + A + + W   R +  E R  SF   MS R+S+R    +L  A K    LD Q G           +SCL   S DE  +EE+                  +M D    V A+      +++  SV         + EKL + T YLR ++ +C++CG +Y + + L   CPGN+   H
Sbjct:    5 EKGLQTSLSSDNKGFALLQKMGYKPGMGIGKQEKGRVDPVSIEVKADRGGLGRDTERKRKVA-EMDRWRAKRQKTEETRTSSFLHRMSDRYSERNAERDLRTAQKACLQLDQQEGLAEPNEDFFWPQSCLATRSGDEDQEEEE------------------TMNDPCSRVTASHDDEEEDEELESV-----TEFSDPEKLEILTKYLRNTYKFCIWCGTRYDNAQDLDASCPGNSASSH 219          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|524893705|ref|XP_005103361.1| (PREDICTED: G patch domain-containing protein 11-like isoform X1 [Aplysia californica])

HSP 1 Score: 115.931 bits (289), Expect = 1.709e-27
Identity = 80/239 (33.47%), Postives = 117/239 (48.95%), Query Frame = 0
Query:   27 EKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLG-ETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGR---------ERSCLWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            EKGLQT LS +N G  +L+ MG+K G+GIGK+E G  +P++   K  R GLG +TER+ + A + + W   R +  E R  SF   MS R+S+R    +L  A K    LD Q G           +SCL   S DE  +EE+                  +M D    V A+      +++  SV         + EKL + T YLR ++ +C++CG +Y + + L   CPGN+   H
Sbjct:   58 EKGLQTSLSSDNKGFALLQKMGYKPGMGIGKQEKGRVDPVSIEVKADRGGLGRDTERKRKVA-EMDRWRAKRQKTEETRTSSFLHRMSDRYSERNAERDLRTAQKACLQLDQQEGLAEPNEDFFWPQSCLATRSGDEDQEEEE------------------TMNDPCSRVTASHDDEEEDEELESV-----TEFSDPEKLEILTKYLRNTYKFCIWCGTRYDNAQDLDASCPGNSASSH 272          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|909142324|gb|KNE66907.1| (hypothetical protein AMAG_11380 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 112.849 bits (281), Expect = 3.412e-26
Identity = 89/274 (32.48%), Postives = 134/274 (48.91%), Query Frame = 0
Query:    3 ERRKLKLMATAFAKAGA-ALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDV-QAGRERSCLWWSSADEQGKEEKRFGLKQGVQES-------------VDFKEKPSM-----RDQNDTVAAN-QMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            ERRKLK    A  +A     + E  E GL+  L E N G+++LK MGFK G G+GK   G+ EPLA +   GR G+G  +  E+ A ++EA    R++L+++ + SF+   S+RF ++ + S++ K  K    LD  Q  +  + LW  S     +      L     ++             VD  E+P        D ND  A +  +P   E    ++ FE    L  D +L+    YLR +H YC+YCG QY + + + E CPG+  DDH
Sbjct:   33 ERRKLKAREAAAKQAPLREQLKESREHGLKRKLDESNKGMQLLKKMGFKDGKGLGKDAAGMAEPLAVSVHAGRTGIG-VKTAEDLAVEQEA---KRVKLLQEAQGSFRDWRSTRFQEKMLESDIKKCRKICYELDSKQELQTHTHLWPLSVQPLPEAPVSLPLPDPDADTGEAELAVAPFETIVDDDEEPGPIELVRPDPNDPTADDGPIPRTAE----AITFE---GLSLDMQLTTLIEYLRTTHRYCIYCGCQYDTQDEMDESCPGSTRDDH 295          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|242025341|ref|XP_002433083.1| (conserved hypothetical protein [Pediculus humanus corporis] >gi|212518610|gb|EEB20345.1| conserved hypothetical protein [Pediculus humanus corporis])

HSP 1 Score: 111.694 bits (278), Expect = 5.641e-26
Identity = 70/235 (29.79%), Postives = 119/235 (50.64%), Query Frame = 0
Query:   23 AEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGR-ERSCLW-WSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
             E LE+GL+ P++  N G  ML+ MGFK+G+G+GK  DG+ EP++   K  + GLG   + +   +K+        +L E   + F   +S +  +++  S+L K+ +  + LD++  + E    W W   D                 S+D K + S+ +  + ++           E S D +  + + ++EKL L T YLRE++ YC++C  QY+  + L EECPG+  DDH
Sbjct:   59 TEVLEEGLKQPINSSNKGFSMLQKMGFKSGMGLGKNNDGMIEPISLNVKNNKQGLGHKIKNQTLLKKK-----TENKLDEINEKDFTMFLSKKNKEKKTTSDLRKSQRVCKELDIKTNKTEPETFWFWPKED-----------------SLD-KSEASVNNDEENISC---------IENSEDIDNEEEITDEEKLELITKYLRETYYYCIWCSVQYYDEKDL-EECPGSTRDDH 260          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|919008444|ref|XP_013388981.1| (PREDICTED: G patch domain-containing protein 11-like [Lingula anatina])

HSP 1 Score: 111.309 bits (277), Expect = 9.558e-26
Identity = 83/250 (33.20%), Postives = 122/250 (48.80%), Query Frame = 0
Query:   16 KAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRR--------ESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSC--LWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            K    + AEK E+GLQ  +S EN G  +LK MG+K G GIGKK DG   P+    K  R+GLG   R  E  RK +A SQA   L+ Q+R         +F+  MSS+ +DR + S+L K+ K  E LD + G E+     +W  A    K  K + L++G   S + +++    +Q +       PT                     KL + TLYLR +H YC++CG  +   + ++  CPG + + H
Sbjct:   52 KPKKVIEAEKREEGLQNAISSENKGFALLKKMGYKPGAGIGKKGDGRANPIPIEVKADRSGLG---RSSEMKRK-QAESQALQALMLQKRMRQEKEIQGNFRTRMSSKVADRHIESDLHKSQKVCEQLDSEKGLEKPAEQFFWPVASLPKK--KTYDLEEGEGYSFEVQDQ-DGEEQEEDEEDELEPTA--------------------KLEILTLYLRNTHMYCVWCGTAFEDSDDMRTNCPGPSSEAH 274          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|919027326|ref|XP_013397470.1| (PREDICTED: G patch domain-containing protein 11-like, partial [Lingula anatina])

HSP 1 Score: 110.538 bits (275), Expect = 1.759e-25
Identity = 83/250 (33.20%), Postives = 122/250 (48.80%), Query Frame = 0
Query:   16 KAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRR--------ESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSC--LWWSSADEQGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            K    + AEK E+GLQ  +S EN G  +LK MG+K G GIGKK DG   P+    K  R+GLG   R  E  RK +A SQA   L+ Q+R         +F+  MSS+ +DR + S+L K+ K  E LD + G E+     +W  A    K  K + L++G   S + +++    +Q +       PT                     KL + TLYLR +H YC++CG  +   + ++  CPG + + H
Sbjct:   38 KPKKVIEAEKREEGLQNAISSENKGFALLKKMGYKPGAGIGKKGDGRANPIPIEVKADRSGLG---RSSEMKRK-QAESQALQALMLQKRMRQEKEIQGNFRTRMSSKVADRHIESDLHKSQKVCEQLDSEKGLEKPAEQFFWPVASLPKK--KTYDLEEGEGYSFEVQDQ-DGEEQEEDEEDELEPTA--------------------KLEILTLYLRNTHMYCVWCGTAFEDSDDMRINCPGPSSEAH 260          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|857978656|emb|CEO95539.1| (hypothetical protein PBRA_004265 [Plasmodiophora brassicae])

HSP 1 Score: 103.219 bits (256), Expect = 5.192e-23
Identity = 79/244 (32.38%), Postives = 112/244 (45.90%), Query Frame = 0
Query:   25 KLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRG-RAGLGETERQEEAARKREAWSQARIRLIEQRR------ESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLWW-----SSADE-QGKEEKRFGLKQGVQESVDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            +L++GL TP+   N G ++L  MG+  G G+GK   G++EP+A     G R+GLG          KR A   A IRL    R      ++F+ AMS +++ RRV   L  A +    LD +AG   + +W      SSAD     E   FG +    E +  + +         +   +  T  ED             K DE LS    YLR  +SYCLYCG++Y   + L   CPG  E+DH
Sbjct:   32 RLDQGLATPIPASNRGHQLLLRMGYTPGQGLGKTGSGVQEPIAIDTSPGSRSGLG---------LKRHAAQVAEIRLRLAHRMKQAQDDAFRGAMSHQYAVRRVEGKLATAQRVCRQLDEEAGLFVNFMWLADQRPSSADAFYDPERDAFGYESVQHEPIALRRR--------VIPPAERLTEVED-------------KLDEILS----YLRVVYSYCLYCGYKYRDNDDLLAHCPGLFEEDH 241          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|1036865162|ref|XP_016978369.1| (PREDICTED: G patch domain-containing protein 11 [Drosophila rhopaloa])

HSP 1 Score: 103.219 bits (256), Expect = 8.106e-23
Identity = 71/239 (29.71%), Postives = 112/239 (46.86%), Query Frame = 0
Query:   25 KLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRL---IEQRRE----SFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLWWSSADEQGKEEKRFGLKQGVQES-VDFKEKPSMRDQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            +L++ L TPLS EN G ++L  MG+K G G+GK+ D   EP+    K GR GLG      E   KR+   +A +     IE R E    +++   + +  +R++  ++ +  +T E+LD                          LK G+ E  ++F   P  +D+++T +  + P   E  E S D    +     E+L L T Y+R ++S+C +CG  Y   E L   CPG   DDH
Sbjct:   60 RLQQSLNTPLSAENKGFQLLAKMGYKAGSGLGKQPDARTEPVGITIKSGRGGLGRDAAVAELTLKRQELRRAHLLSKAGIESREEISTEAYRQRATHKAEERKLQYDIKRGQQTCESLD--------------------------LKSGITEPDLEFFWPPKPKDEDETGSEEEDP---EADETSKD----EPFTPSEQLGLLTGYMRTAYSFCYWCGTHYEDAEDLSTNCPGPTRDDH 265          
BLAST of EWM30327.1 vs. NCBI_GenBank
Match: gi|1207975750|ref|XP_021378777.1| (G patch domain-containing protein 11-like [Mizuhopecten yessoensis])

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-22
Identity = 76/251 (30.28%), Postives = 129/251 (51.39%), Query Frame = 0
Query:   16 KAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLG-ETE---RQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLW--WSSADEQGKEEKRFGLKQGVQESVDFKEKPSMR-----DQNDTVAANQMPTMTEDQECSVDFELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
            K    +  EK E+GLQ+ +  EN G  +L  MG+K G  +GK+ +G  EP+    K GR GLG +TE   +Q +A   R   S  R ++  ++++ F A MS+RFS+++   +L K+ K  E LD Q       L+  W ++  +  ++K    +Q V++  D  +  +        +N   + +      E++E   + E+  T+  +EKL + T YLR ++ YC++CG +Y   E L   CPG+  + H
Sbjct:   51 KPKKVIENEKREEGLQSAIGSENKGFALLAKMGYKPGTALGKRGEGRSEPVPIELKNGRGGLGRDTEVKRKQAQAVAFRAMVSHKRQKMELRQKQHFVANMSNRFSEQQAERDLYKSQKVCEQLDSQKDITEPELYYFWPASHLKKLKKK---AQQHVRDECDLDDDFNDERDDAIPKNPLRSIHDFEEEEEEEEEEEEEEIIDTVTTEEKLQILTKYLRTNYIYCVWCGTRYDDAEDLNSSCPGSTAEAH 298          
The following BLAST results are available for this feature:
BLAST of EWM30327.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112986|gb|EWM30327.1|0.000e+0100.00coiled-coil domain-containing protein 75 [Nannochl... [more]
gi|524893707|ref|XP_005103362.1|8.279e-2833.47PREDICTED: G patch domain-containing protein 11-li... [more]
gi|524893705|ref|XP_005103361.1|1.709e-2733.47PREDICTED: G patch domain-containing protein 11-li... [more]
gi|909142324|gb|KNE66907.1|3.412e-2632.48hypothetical protein AMAG_11380 [Allomyces macrogy... [more]
gi|242025341|ref|XP_002433083.1|5.641e-2629.79conserved hypothetical protein [Pediculus humanus ... [more]
gi|919008444|ref|XP_013388981.1|9.558e-2633.20PREDICTED: G patch domain-containing protein 11-li... [more]
gi|919027326|ref|XP_013397470.1|1.759e-2533.20PREDICTED: G patch domain-containing protein 11-li... [more]
gi|857978656|emb|CEO95539.1|5.192e-2332.38hypothetical protein PBRA_004265 [Plasmodiophora b... [more]
gi|1036865162|ref|XP_016978369.1|8.106e-2329.71PREDICTED: G patch domain-containing protein 11 [D... [more]
gi|1207975750|ref|XP_021378777.1|1.072e-2230.28G patch domain-containing protein 11-like [Mizuhop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna389rna389Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications