EWM26808.1, cds3884 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26808.1
Unique Name	cds3884
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:341824..348189 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26808.1
Product	deubiquitinating enzyme
Orig transcript id	gnl\|cribi\|Naga_100018g9.2788.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:341824..348189 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009060	UBA-like

Homology

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BLAST of EWM26808.1 vs. NCBI_GenBank
Match: gi|585108899|gb|EWM26808.1| (deubiquitinating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 4264.15 bits (11058), Expect = 0.000e+0
Identity = 2121/2121 (100.00%), Postives = 2121/2121 (100.00%), Query Frame = 0

Query:    1 MPYLDLVDRRPLDWVEEGQIPQGWRGYWTPESLDAWYSARAEQVEANGGALGGNVMELINIGLARGCPEGGSTSRLRAEVWHFTRVVYAGLDTGESQEGEGVEEGLTLQAWRKLPLRTVMRRILEHAPLACMEDTSSLVQLIEVYIWPMLRGPLAQVPSCQKEQQPALALQEPHMSGVPGDGEAALAEEVTDFLVTRILEARKERLAREADVYADQYEADEETVEAWHAAEVRAEVVLRAAVAVAQASKPNLSPERRVLQREADLFRFVLQCSRAHDDCLDPPGAIDLLWSLIECLPVASAAAAPELQAEVDALEARLTVAQYLSNYSIAFPLSVYERFQMDLAGGSFSGLEGSEADFRVLGTWEDVLPVAFRKGPAAVLDDHTPGKGSQICEDIRLDIQILARMARYLAVKLQEMDEQQRQQQEQEKFWNEVGEDVRALQAGGIFYTLPLYSWTQALVYAALKGVAKCGMVSSSPPRRALPPPPPPSTTVLASAMAGLQLPAAGLEPVVFQLLQDWLHEADGGLDHSVNRARALLAALPFSSRRCHKEAQWLEAVVLATKLAGDKGWGKEDLTPTEVRAAAQGGYGMQVLLAILDTRPKLVLTEDGERDLLRLAGLLGMEEEEVEPVLKFVTIKKAMALEEYEMAALALLESMPVPKLVGAVVELDEGRDETWAMDEEDVWSLVFALLTTRNIETKIPSDLLRSIMHRALIAAPPHHLLDLVEVITESVLACKSFLLPSSGEPSNEEKLQVMGLEDYKHSFSFVRNVKSKEHSISPLHSQEWDDVLLELVKSSLEKAREVMWVPSKTYARNDKMECSPLSKANTSISFPPAVQEFVERALIYLLSLHDGRRGVAWVRKAVSEAEKKAHEEAAEAGRRAQIEGEMRFAHEGAKKGGTVVDEGSIVKQLLARGYSKFGALRAARAVGNKSADAAIQWAVAHSHDPGFDDPLPAETSLRPSLIFHSSSSPPLPALAGLGNFAFPRPSSPWRDSEEVPEKEEKARKIEEPMLEAIRSLAIRYLCLEALVERNGTVSTPFYCASAGELLKHAMALPEPPPPPKPGASSKGENEESLHSETEVLGESLAQLCRRELAAYSQEAERTGVLTTLQAFVPWTLDGVKVRIDQEYRTEAVFAAARQDDAQAWKAAMMAAEAWGVEKGEVALAHLEFWFQGPLKEAWSKFRAAGLGEVISRFEKVALGKRGSNGSEKQGSGTRAGAEIEQDLSALGSQWDPRSAGAQLIASTPEARHAVSRLAVVWDALDGQAMSLLEVLSRIMAEITTVAEKEAGEHGESFVGIGKRLRDHVQLLRRLMRIPNLPSTLNYKRLTASTPPYLTACVLLKRKDSDSEDTAQKASLAPAPTRDWLIQESYRELVHNVRRDNVTALSKLAARILLPCGPLSASTVNRAYAEALLRGLDPLLSDEEANLPLARASAEERFSHRAFVAEPYLDRLASSDLIGLLESVCMPRLEASRLAEREMRATPNEKASPLLSAGPCLSSVSDRSLVSQKIAILYQSSKGKGGDTHVKSDDFECIQRIIALLEALTLCGGDASEDSRALETAWIEGTDVSPVLESMLVEGRGGGWAGLQTLMRALKRAAASPPTSSPSFRGGKGFLLPQDEALGVLVGAVKHLLGAPLPFDKAHLVNLERILTDSVAASRTHDMSLDNEEEDAGAQARWALIRPILEEFVAQDGAEEEGEGGQDGSTARALSPVQQGHQDRARADVVEIVLRLGTGFSLEGGNEAMVVYHRAAEMMWEGLGRKLSRREAETVDGRVQALLAAMEGPKGLEKAGAETALALVRLWSGSVAKGSGPLGLAVDWSRWVLDTREDGDADKTLPGEEAACDCETTLPEYDVIYRRLTERALDAHKWNGASSLLLWSPWRYRGGDGGDREEEELAAKLGDLQAPLALRLKVALSSPHAALRAEAVAGLPALLGDKATNSEEEATGGVPPVSGSVHATPRPCLSSRVLVADETLLALIVCALFPPRPVKDPLTLLFSSAWQLVADALLFLPHSPKASRVPPLPASVAFVAARLVIGRAHLHAGALVADAQKLHPALRTVEGVLSLLWTTLCSGTYHIRGETGGTLSDKGHERDQLRQSDIKLWSQVREAAKKVLEQDETDT 2121
            MPYLDLVDRRPLDWVEEGQIPQGWRGYWTPESLDAWYSARAEQVEANGGALGGNVMELINIGLARGCPEGGSTSRLRAEVWHFTRVVYAGLDTGESQEGEGVEEGLTLQAWRKLPLRTVMRRILEHAPLACMEDTSSLVQLIEVYIWPMLRGPLAQVPSCQKEQQPALALQEPHMSGVPGDGEAALAEEVTDFLVTRILEARKERLAREADVYADQYEADEETVEAWHAAEVRAEVVLRAAVAVAQASKPNLSPERRVLQREADLFRFVLQCSRAHDDCLDPPGAIDLLWSLIECLPVASAAAAPELQAEVDALEARLTVAQYLSNYSIAFPLSVYERFQMDLAGGSFSGLEGSEADFRVLGTWEDVLPVAFRKGPAAVLDDHTPGKGSQICEDIRLDIQILARMARYLAVKLQEMDEQQRQQQEQEKFWNEVGEDVRALQAGGIFYTLPLYSWTQALVYAALKGVAKCGMVSSSPPRRALPPPPPPSTTVLASAMAGLQLPAAGLEPVVFQLLQDWLHEADGGLDHSVNRARALLAALPFSSRRCHKEAQWLEAVVLATKLAGDKGWGKEDLTPTEVRAAAQGGYGMQVLLAILDTRPKLVLTEDGERDLLRLAGLLGMEEEEVEPVLKFVTIKKAMALEEYEMAALALLESMPVPKLVGAVVELDEGRDETWAMDEEDVWSLVFALLTTRNIETKIPSDLLRSIMHRALIAAPPHHLLDLVEVITESVLACKSFLLPSSGEPSNEEKLQVMGLEDYKHSFSFVRNVKSKEHSISPLHSQEWDDVLLELVKSSLEKAREVMWVPSKTYARNDKMECSPLSKANTSISFPPAVQEFVERALIYLLSLHDGRRGVAWVRKAVSEAEKKAHEEAAEAGRRAQIEGEMRFAHEGAKKGGTVVDEGSIVKQLLARGYSKFGALRAARAVGNKSADAAIQWAVAHSHDPGFDDPLPAETSLRPSLIFHSSSSPPLPALAGLGNFAFPRPSSPWRDSEEVPEKEEKARKIEEPMLEAIRSLAIRYLCLEALVERNGTVSTPFYCASAGELLKHAMALPEPPPPPKPGASSKGENEESLHSETEVLGESLAQLCRRELAAYSQEAERTGVLTTLQAFVPWTLDGVKVRIDQEYRTEAVFAAARQDDAQAWKAAMMAAEAWGVEKGEVALAHLEFWFQGPLKEAWSKFRAAGLGEVISRFEKVALGKRGSNGSEKQGSGTRAGAEIEQDLSALGSQWDPRSAGAQLIASTPEARHAVSRLAVVWDALDGQAMSLLEVLSRIMAEITTVAEKEAGEHGESFVGIGKRLRDHVQLLRRLMRIPNLPSTLNYKRLTASTPPYLTACVLLKRKDSDSEDTAQKASLAPAPTRDWLIQESYRELVHNVRRDNVTALSKLAARILLPCGPLSASTVNRAYAEALLRGLDPLLSDEEANLPLARASAEERFSHRAFVAEPYLDRLASSDLIGLLESVCMPRLEASRLAEREMRATPNEKASPLLSAGPCLSSVSDRSLVSQKIAILYQSSKGKGGDTHVKSDDFECIQRIIALLEALTLCGGDASEDSRALETAWIEGTDVSPVLESMLVEGRGGGWAGLQTLMRALKRAAASPPTSSPSFRGGKGFLLPQDEALGVLVGAVKHLLGAPLPFDKAHLVNLERILTDSVAASRTHDMSLDNEEEDAGAQARWALIRPILEEFVAQDGAEEEGEGGQDGSTARALSPVQQGHQDRARADVVEIVLRLGTGFSLEGGNEAMVVYHRAAEMMWEGLGRKLSRREAETVDGRVQALLAAMEGPKGLEKAGAETALALVRLWSGSVAKGSGPLGLAVDWSRWVLDTREDGDADKTLPGEEAACDCETTLPEYDVIYRRLTERALDAHKWNGASSLLLWSPWRYRGGDGGDREEEELAAKLGDLQAPLALRLKVALSSPHAALRAEAVAGLPALLGDKATNSEEEATGGVPPVSGSVHATPRPCLSSRVLVADETLLALIVCALFPPRPVKDPLTLLFSSAWQLVADALLFLPHSPKASRVPPLPASVAFVAARLVIGRAHLHAGALVADAQKLHPALRTVEGVLSLLWTTLCSGTYHIRGETGGTLSDKGHERDQLRQSDIKLWSQVREAAKKVLEQDETDT
Sbjct:    1 MPYLDLVDRRPLDWVEEGQIPQGWRGYWTPESLDAWYSARAEQVEANGGALGGNVMELINIGLARGCPEGGSTSRLRAEVWHFTRVVYAGLDTGESQEGEGVEEGLTLQAWRKLPLRTVMRRILEHAPLACMEDTSSLVQLIEVYIWPMLRGPLAQVPSCQKEQQPALALQEPHMSGVPGDGEAALAEEVTDFLVTRILEARKERLAREADVYADQYEADEETVEAWHAAEVRAEVVLRAAVAVAQASKPNLSPERRVLQREADLFRFVLQCSRAHDDCLDPPGAIDLLWSLIECLPVASAAAAPELQAEVDALEARLTVAQYLSNYSIAFPLSVYERFQMDLAGGSFSGLEGSEADFRVLGTWEDVLPVAFRKGPAAVLDDHTPGKGSQICEDIRLDIQILARMARYLAVKLQEMDEQQRQQQEQEKFWNEVGEDVRALQAGGIFYTLPLYSWTQALVYAALKGVAKCGMVSSSPPRRALPPPPPPSTTVLASAMAGLQLPAAGLEPVVFQLLQDWLHEADGGLDHSVNRARALLAALPFSSRRCHKEAQWLEAVVLATKLAGDKGWGKEDLTPTEVRAAAQGGYGMQVLLAILDTRPKLVLTEDGERDLLRLAGLLGMEEEEVEPVLKFVTIKKAMALEEYEMAALALLESMPVPKLVGAVVELDEGRDETWAMDEEDVWSLVFALLTTRNIETKIPSDLLRSIMHRALIAAPPHHLLDLVEVITESVLACKSFLLPSSGEPSNEEKLQVMGLEDYKHSFSFVRNVKSKEHSISPLHSQEWDDVLLELVKSSLEKAREVMWVPSKTYARNDKMECSPLSKANTSISFPPAVQEFVERALIYLLSLHDGRRGVAWVRKAVSEAEKKAHEEAAEAGRRAQIEGEMRFAHEGAKKGGTVVDEGSIVKQLLARGYSKFGALRAARAVGNKSADAAIQWAVAHSHDPGFDDPLPAETSLRPSLIFHSSSSPPLPALAGLGNFAFPRPSSPWRDSEEVPEKEEKARKIEEPMLEAIRSLAIRYLCLEALVERNGTVSTPFYCASAGELLKHAMALPEPPPPPKPGASSKGENEESLHSETEVLGESLAQLCRRELAAYSQEAERTGVLTTLQAFVPWTLDGVKVRIDQEYRTEAVFAAARQDDAQAWKAAMMAAEAWGVEKGEVALAHLEFWFQGPLKEAWSKFRAAGLGEVISRFEKVALGKRGSNGSEKQGSGTRAGAEIEQDLSALGSQWDPRSAGAQLIASTPEARHAVSRLAVVWDALDGQAMSLLEVLSRIMAEITTVAEKEAGEHGESFVGIGKRLRDHVQLLRRLMRIPNLPSTLNYKRLTASTPPYLTACVLLKRKDSDSEDTAQKASLAPAPTRDWLIQESYRELVHNVRRDNVTALSKLAARILLPCGPLSASTVNRAYAEALLRGLDPLLSDEEANLPLARASAEERFSHRAFVAEPYLDRLASSDLIGLLESVCMPRLEASRLAEREMRATPNEKASPLLSAGPCLSSVSDRSLVSQKIAILYQSSKGKGGDTHVKSDDFECIQRIIALLEALTLCGGDASEDSRALETAWIEGTDVSPVLESMLVEGRGGGWAGLQTLMRALKRAAASPPTSSPSFRGGKGFLLPQDEALGVLVGAVKHLLGAPLPFDKAHLVNLERILTDSVAASRTHDMSLDNEEEDAGAQARWALIRPILEEFVAQDGAEEEGEGGQDGSTARALSPVQQGHQDRARADVVEIVLRLGTGFSLEGGNEAMVVYHRAAEMMWEGLGRKLSRREAETVDGRVQALLAAMEGPKGLEKAGAETALALVRLWSGSVAKGSGPLGLAVDWSRWVLDTREDGDADKTLPGEEAACDCETTLPEYDVIYRRLTERALDAHKWNGASSLLLWSPWRYRGGDGGDREEEELAAKLGDLQAPLALRLKVALSSPHAALRAEAVAGLPALLGDKATNSEEEATGGVPPVSGSVHATPRPCLSSRVLVADETLLALIVCALFPPRPVKDPLTLLFSSAWQLVADALLFLPHSPKASRVPPLPASVAFVAARLVIGRAHLHAGALVADAQKLHPALRTVEGVLSLLWTTLCSGTYHIRGETGGTLSDKGHERDQLRQSDIKLWSQVREAAKKVLEQDETDT 2121

The following BLAST results are available for this feature:

BLAST of EWM26808.1 vs. NCBI_GenBank

BLAST of EWM26808.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108899\|gb\|EWM26808.1\|	0.000e+0	100.00	deubiquitinating enzyme [Nannochloropsis gaditana]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3893	rna3893	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications