EWM26787.1, cds3880 (CDS) Nannochloropsis gaditana

Overview
NameEWM26787.1
Unique Namecds3880
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:330954..334530 -
Alignment locationCM002462.1:330747..330838 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26787.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g13.2767.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:330954..334530 -
CM002462.1supercontigCM002462.1:330747..330838 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26787.1 vs. NCBI_GenBank
Match: gi|585108878|gb|EWM26787.1| (hypothetical protein Naga_100018g13 [Nannochloropsis gaditana])

HSP 1 Score: 2503.78 bits (6488), Expect = 0.000e+0
Identity = 1222/1222 (100.00%), Postives = 1222/1222 (100.00%), Query Frame = 0
Query:    1 MRLPRGTPSLLLSINLLWCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAAAGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVGEESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEEDDVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSLETRRKM 1222
            MRLPRGTPSLLLSINLLWCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAAAGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVGEESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEEDDVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSLETRRKM
Sbjct:    1 MRLPRGTPSLLLSINLLWCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAAAGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVGEESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEEDDVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSLETRRKM 1222          
BLAST of EWM26787.1 vs. NCBI_GenBank
Match: gi|585103616|gb|EWM22920.1| (hypothetical protein Naga_101147g1 [Nannochloropsis gaditana])

HSP 1 Score: 83.5741 bits (205), Expect = 3.382e-13
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 0
Query:  454 AIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPT--NTTPYIEIVSFRDC---KDAA 565
            AI  G C  Y+ G A   +C +       +   L GF+ N G   +CD+++ P L +   T  + WPDWASDASYE +F+  QMT+VG+T  P    + P +EIVS R C   KDAA
Sbjct:   96 AIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAP-LNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAA 209          

HSP 2 Score: 70.4774 bits (171), Expect = 5.899e-9
Identity = 42/131 (32.06%), Postives = 64/131 (48.85%), Query Frame = 0
Query:   73 VDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPS 203
            VD  + + P      I  G+C  Y+ G   A   LCV+       +   L  FL N+GT  LCD  + P    G T  +FWPDWA +   E Y    Q+ ++G+T  P   ++  SLP +++V+ + C P+
Sbjct:   82 VDPTTPVAPLEATTAIAPGECMSYQSGD--ANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATP---NADGSLPSVEIVSLRACDPT 205          
BLAST of EWM26787.1 vs. NCBI_GenBank
Match: gi|585103613|gb|EWM22919.1| (hypothetical protein Naga_101679g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 62.3882 bits (150), Expect = 1.605e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query: 1165 NLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSC 1213
            N ++A++ WG+WMPT+PY L   ST+KF AN+PY KG P+  L  +  C
Sbjct:    6 NFENARSYWGDWMPTFPYYLDELSTVKFAANVPYPKGHPRVSLKKYSVC 54          
The following BLAST results are available for this feature:
BLAST of EWM26787.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108878|gb|EWM26787.1|0.000e+0100.00hypothetical protein Naga_100018g13 [Nannochlorops... [more]
gi|585103616|gb|EWM22920.1|3.382e-1341.03hypothetical protein Naga_101147g1 [Nannochloropsi... [more]
gi|585103613|gb|EWM22919.1|1.605e-748.98hypothetical protein Naga_101679g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3889rna3889Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications