EWM26787.1, cds3880 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26787.1 vs. NCBI_GenBank
Match: gi|585108878|gb|EWM26787.1| (hypothetical protein Naga_100018g13 [Nannochloropsis gaditana]) HSP 1 Score: 2503.78 bits (6488), Expect = 0.000e+0 Identity = 1222/1222 (100.00%), Postives = 1222/1222 (100.00%), Query Frame = 0 Query: 1 MRLPRGTPSLLLSINLLWCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAAAGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVGEESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEEDDVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSLETRRKM 1222 MRLPRGTPSLLLSINLLWCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAAAGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVGEESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEEDDVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSLETRRKM Sbjct: 1 MRLPRGTPSLLLSINLLWCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAAAGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVGEESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEEDDVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSLETRRKM 1222
BLAST of EWM26787.1 vs. NCBI_GenBank
Match: gi|585103616|gb|EWM22920.1| (hypothetical protein Naga_101147g1 [Nannochloropsis gaditana]) HSP 1 Score: 83.5741 bits (205), Expect = 3.382e-13 Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 0 Query: 454 AIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPT--NTTPYIEIVSFRDC---KDAA 565 AI G C Y+ G A +C + + L GF+ N G +CD+++ P L + T + WPDWASDASYE +F+ QMT+VG+T P + P +EIVS R C KDAA Sbjct: 96 AIAPGECMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAP-LNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAA 209 HSP 2 Score: 70.4774 bits (171), Expect = 5.899e-9 Identity = 42/131 (32.06%), Postives = 64/131 (48.85%), Query Frame = 0 Query: 73 VDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPS 203 VD + + P I G+C Y+ G A LCV+ + L FL N+GT LCD + P G T +FWPDWA + E Y Q+ ++G+T P ++ SLP +++V+ + C P+ Sbjct: 82 VDPTTPVAPLEATTAIAPGECMSYQSGD--ANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVT--AFWPDWASDASYEKYFNLKQMTSVGLTATP---NADGSLPSVEIVSLRACDPT 205
BLAST of EWM26787.1 vs. NCBI_GenBank
Match: gi|585103613|gb|EWM22919.1| (hypothetical protein Naga_101679g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 62.3882 bits (150), Expect = 1.605e-7 Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0 Query: 1165 NLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSC 1213 N ++A++ WG+WMPT+PY L ST+KF AN+PY KG P+ L + C Sbjct: 6 NFENARSYWGDWMPTFPYYLDELSTVKFAANVPYPKGHPRVSLKKYSVC 54 The following BLAST results are available for this feature:
BLAST of EWM26787.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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