EWM26815.1, cds3870 (CDS) Nannochloropsis gaditana

Overview
NameEWM26815.1
Unique Namecds3870
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:307702..308281 +
Alignment locationCM002462.1:308408..309738 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26815.1
ProductUbiquitin-associated/translation elongation factor EF1B
Orig transcript idgnl|cribi|Naga_100018g26.2795.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:307702..308281 +
CM002462.1supercontigCM002462.1:308408..309738 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
IPR013536WLM
IPR018997PUB_domain
IPR015940UBA/transl_elong_EF1B_N_euk
IPR006567PUG-dom
Homology
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|585108906|gb|EWM26815.1| (Ubiquitin-associated/translation elongation factor EF1B [Nannochloropsis gaditana])

HSP 1 Score: 1298.11 bits (3358), Expect = 0.000e+0
Identity = 636/636 (100.00%), Postives = 636/636 (100.00%), Query Frame = 0
Query:    1 MDCEIYDAETNSVEVNLSFKGQQDLLHLPASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLRADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAFNSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTSARVMAGLAAIQRLSKEEQAIDDACGSGRQSGTMGLTGVTRPSERDSDNPNRSIKATLQAQEDAAHTEEKGEKDSKSPDSELVTVLPAEDPSRSGRTASGPGYDQLPSPTPSPLKPSVPENPGSLGDSSLDEMRESALHFHSHSAGCCSSTDRMDEAAAQLMGLGFGEAQVLEALHLYDGDLMRAADYLLELAAREERAGEGEGQIVGASSANLSDPSPRPPAAAIDTPTIPSDSRQARVMEAAQRLAREASEGSNAAFATLQSMLQALLEHPQELKFRRVRLNNAKFQRTVGRFPAAIDLLRDVGFQEREGGTVLEYTRGDPGLLWWGKCVVEQAKEGTLP 636
            MDCEIYDAETNSVEVNLSFKGQQDLLHLPASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLRADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAFNSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTSARVMAGLAAIQRLSKEEQAIDDACGSGRQSGTMGLTGVTRPSERDSDNPNRSIKATLQAQEDAAHTEEKGEKDSKSPDSELVTVLPAEDPSRSGRTASGPGYDQLPSPTPSPLKPSVPENPGSLGDSSLDEMRESALHFHSHSAGCCSSTDRMDEAAAQLMGLGFGEAQVLEALHLYDGDLMRAADYLLELAAREERAGEGEGQIVGASSANLSDPSPRPPAAAIDTPTIPSDSRQARVMEAAQRLAREASEGSNAAFATLQSMLQALLEHPQELKFRRVRLNNAKFQRTVGRFPAAIDLLRDVGFQEREGGTVLEYTRGDPGLLWWGKCVVEQAKEGTLP
Sbjct:    1 MDCEIYDAETNSVEVNLSFKGQQDLLHLPASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLRADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAFNSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTSARVMAGLAAIQRLSKEEQAIDDACGSGRQSGTMGLTGVTRPSERDSDNPNRSIKATLQAQEDAAHTEEKGEKDSKSPDSELVTVLPAEDPSRSGRTASGPGYDQLPSPTPSPLKPSVPENPGSLGDSSLDEMRESALHFHSHSAGCCSSTDRMDEAAAQLMGLGFGEAQVLEALHLYDGDLMRAADYLLELAAREERAGEGEGQIVGASSANLSDPSPRPPAAAIDTPTIPSDSRQARVMEAAQRLAREASEGSNAAFATLQSMLQALLEHPQELKFRRVRLNNAKFQRTVGRFPAAIDLLRDVGFQEREGGTVLEYTRGDPGLLWWGKCVVEQAKEGTLP 636          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|298708712|emb|CBJ49209.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 292.738 bits (748), Expect = 4.013e-86
Identity = 234/696 (33.62%), Postives = 345/696 (49.57%), Query Frame = 0
Query:   13 VEVNLSFKGQQ-DLLHLPASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITL---GQL-------------------RAD--VEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMS--GGIKISTVAAP---VLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAFN----SSGRAVGGALHLP-AEGGGMPGG---------LFEGGSGRLGGRGAS----TSARVMAGLAAIQRLSKEEQAIDDACG--SGRQSGTMGLTGVTRPSERD------------SDNPNRSIKATLQAQEDAAHTEEKGEKDSKSPDSELVT------VLPAEDPSRSGRTASGPGYDQLPSP-----TPSPLKPSVPENPGSLGDSSLDEMRESALHFHSHSAGCCSSTDRMDEAAA--QLMGLGFGEAQVLEALHLYDGDLMRAADYLLELAAREERAGEGEGQIVGASSANLSDPSPRPPAAAIDTPTIPSDSRQARVMEAAQRLAREASEGSNA-AFATLQSMLQALLEHPQELKFRRVRLNNAKFQRTVGRFPAAIDLLRDVGFQEREGGTVLEYTRGDPGLLWWGKCVVEQAKE 632
            +E+ +SF+G+   +  +  +T + +++   E  T +  A+QK+I KGK L D + TL   G L                   + D  V+  KL+L+G+  + +    E     + +R+ NDL G ++  G  K++    P    L P  Y F+ IE LP LP+++ AR+IL  LA+DPGV  V+E+++W+VGALCE+YPEG VGVS  CV+GLN+N G +IFLRLRTDDL G+RK LS+RKVLFHELAHN  + HD  F++LMR +ER+    N    S GR V G    P AE  G+PGG          FEGGSGRLGG   +     SA  MAG AA+QRL+ EEQ ++D CG   G  +G   +    R +E +            SD+ +  +   L +    A + + G  D K+   E         +  A + + +     G   + + SP      P+PL+     +P +    +            + +A       R  E+++  +L+ +GF     +EAL    G +  AA Y L      E       + VG ++A       R       +       R  R+ +AA R+A  A           L ++L+ ++EHP+E KFR+VR +N KF+ +VG     +DLL   GF+ER G   LE  R DPGL+W  K  VE  +E
Sbjct:    1 MELQVSFRGEPLTVTGVDHATAVENLKNKLEELTAVPVANQKLILKGKALRDEAGTLEAAGVLVPSPAQTATTTTATERHEEKGDTFVQKSKLMLVGSKPSEVE---EVLREQDRVRVRNDLNGQVTPKGYKKVALNYPPGPSDLSP--YRFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPEGKVGVSDKCVLGLNQNHGMKIFLRLRTDDLRGFRKILSIRKVLFHELAHNDISDHDDNFYMLMRQVEREAAELNWMQQSGGRTVAGRPPAPRAEPAGLPGGGEGFILVKEAFEGGSGRLGGDSNAFTKIFSAGEMAGQAAVQRLTPEEQEVEDCCGHTKGVAAGAAEVEKEERLAETNAMASSVSEMSVTSDDLDDGVAPALTSAAAGATSGDHGGTDGKTRGGEERQAERGQRLTGASEMNVAEEEGDGISVEPVDSPPLEAAAPTPLEMDEEPSPVARASPAPSPTPPPPPETLAAAATKLGPAPRTPESSSLDELLAMGFPREAAVEALSASGGSIPDAA-YRLLTPGMMESGRNNSSEAVGMTAAGGGAQGSREAGRDTGSEGAVRLPRDVRLQQAADRVAGHADRARAVQCLDVLAAVLRNIMEHPEEAKFRKVRRSNGKFKASVGAVAGGVDLLLAAGFEER-GDDQLELGRQDPGLIWLAKSTVEAWQE 689          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|698812170|ref|XP_009839114.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574105929|gb|ETV71450.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 169.859 bits (429), Expect = 1.003e-43
Identity = 93/207 (44.93%), Postives = 127/207 (61.35%), Query Frame = 0
Query:   49 PAHQKIICKGKKLTDPSIT-LGQLRADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNA 254
            P+  ++I KGK L D  +    Q  A   VI ++       ++ A      R+++IR    +    +    +S  A   +    Y F+ IE LP LP++  AR IL  LASDPG+L V+  +KW VGAL EMYP+G VGV  VCV+GLNENKGQRI LRLRTDDLLG+RK L++++VLFHEL+HN  + H+  F+ LMR +E + NA
Sbjct:   41 PSQLRLIVKGKILADDDVVDATQTAAAPAVIHILPSEHEIQNMLAREAEAKRIHDIRATRHVVSIQARNEHLSARAHASI---TYKFRDIETLPGLPNEPTARNILVSLASDPGILAVLAHHKWQVGALVEMYPDGKVGVDPVCVLGLNENKGQRIRLRLRTDDLLGFRKFLTIKQVLFHELSHNEVSDHNNDFYQLMRQVETECNA 244          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|675198529|ref|XP_008908149.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568091839|gb|ETN06657.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310])

HSP 1 Score: 170.244 bits (430), Expect = 1.142e-43
Identity = 118/294 (40.14%), Postives = 168/294 (57.14%), Query Frame = 0
Query:   15 VNLSFKGQQDLLHLP--ASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLR--ADVEVIKLVLIGTTTASLAAL------AEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAF---NSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTS 295
            +++++KGQ   L  P  +S T+A++QA  E   G+    Q++  K +++ D S  L  LR   D     L+++G +TA +  +       E   ++   R + D+     G      V+        Y F +IE L +  D+D A+ IL  LA+D G+L VM ++KWSVG L EM P+G VGV  VCV+GLN+NKGQ+I LRLRTDDLLG+RK LS++KVLFHEL+HNVH+ HD  F+ LMR +E++ N     NS G AVGG+     +       +  G   RLGG  A TS
Sbjct:    4 LSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISKRNQGIQARDAVST------NYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGSPAALHDDDSTSSNVSSG--HRLGGGSAGTS 288          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|1021054884|emb|SAM09376.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 168.703 bits (426), Expect = 1.394e-43
Identity = 123/336 (36.61%), Postives = 167/336 (49.70%), Query Frame = 0
Query:   12 SVEVNLSFKGQQ-DLLHLPASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLR--ADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAA--PVLRPR-----KYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAFNSSGR-----AVGGALHLPA--EGGGMPGG--LFEGGSGRLGGR------GASTSARVMAGLAAIQRLSK-EEQAIDDACGS 321
            ++   +SFKG+     +   STT+  V+A    +T I   HQK++ KGK L D   TL  L   A +   K +L GTT    AA+ +             L  N++   +  +  A  P  +PR     KY F  I VLP    QD AR++L  L  D GV  +M + KWSVG L E+ P        V ++G N N GQ I +RLRTDDL G+R   S+RKVL HEL HNV   HD  FH L R + +DV + + +       +  GA + P   + G    G   +E GS RLGG        ++T  R  A  AA+ RL+K EEQ +D+ CGS
Sbjct:    3 TISFTVSFKGKSIPFTNWAVSTTVGHVKAKLADETNIANDHQKLMWKGKILQDDQATLDTLAIPAILSKAKFMLTGTTQQDQAAVQQ-------------LDKNIAALQQRRSTPAKRPSQQPRSVQDIKYTFHRISVLPEFQQQDKARQLLERLRDDRGVRAIMNQRKWSVGELIELSP------FEVSILGYNRNAGQLIAIRLRTDDLTGFRHYDSIRKVLLHELTHNVWGDHDDNFHKLNRQLNKDVVSLDWTAHGGHQISSNGAYYQPGIDDDGLEESGPVTWEAGSYRLGGETRVNNSNSATLRREQAAQAALSRLTKQEEQEMDEGCGS 319          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|568015546|gb|ETL89723.1| (hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 169.859 bits (429), Expect = 1.660e-43
Identity = 118/294 (40.14%), Postives = 168/294 (57.14%), Query Frame = 0
Query:   15 VNLSFKGQQDLLHLP--ASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLR--ADVEVIKLVLIGTTTASLAAL------AEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAF---NSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTS 295
            +++++KGQ   L  P  +S T+A++QA  E   G+    Q++  K +++ D S  L  LR   D     L+++G +TA +  +       E   ++   R + D+     G      V+        Y F +IE L +  D+D A+ IL  LA+D G+L VM ++KWSVG L EM P+G VGV  VCV+GLN+NKGQ+I LRLRTDDLLG+RK LS++KVLFHEL+HNVH+ HD  F+ LMR +E++ N     NS G AVGG+     +       +  G   RLGG  A TS
Sbjct:    4 LSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISKRNQGIQARDAVST------NYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGSPAALHDDDSTSSNVSSG--HRLGGGSAGTS 288          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|567986176|gb|ETL36503.1| (hypothetical protein, variant 3 [Phytophthora parasitica] >gi|570947570|gb|ETP12827.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 169.474 bits (428), Expect = 1.764e-43
Identity = 118/294 (40.14%), Postives = 168/294 (57.14%), Query Frame = 0
Query:   15 VNLSFKGQQDLLHLP--ASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLR--ADVEVIKLVLIGTTTASLAAL------AEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAF---NSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTS 295
            +++++KGQ   L  P  +S T+A++QA  E   G+    Q++  K +++ D S  L  LR   D     L+++G +TA +  +       E   ++   R + D+     G      V+        Y F +IE L +  D+D A+ IL  LA+D G+L VM ++KWSVG L EM P+G VGV  VCV+GLN+NKGQ+I LRLRTDDLLG+RK LS++KVLFHEL+HNVH+ HD  F+ LMR +E++ N     NS G AVGG+     +       +  G   RLGG  A TS
Sbjct:    4 LSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISKRNQGIQARDAVST------NYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGSPAALHDDDSTSSNVSSG--HRLGGGSAGTS 288          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|570980177|gb|ETP40926.1| (hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-43
Identity = 120/307 (39.09%), Postives = 171/307 (55.70%), Query Frame = 0
Query:   15 VNLSFKGQQDLLHLP--ASTTLADVQALAETKTGIHPAHQKIICKGKKLTDPSITLGQLR--ADVEVIKLVLIGTTTASLAAL------AEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAF---NSSGRAVGGALHLPAEGGGMPGGLFEGGSGRLGGRGASTSARVMAGLAAIQRL 308
            +++++KGQ   L  P  +S T+A++QA  E   G+    Q++  K +++ D S  L  LR   D     L+++G +TA +  +       E   ++   R + D+     G      V+        Y F +IE L +  D+D A+ IL  LA+D G+L VM ++KWSVG L EM P+G VGV  VCV+GLN+NKGQ+I LRLRTDDLLG+RK LS++KVLFHEL+HNVH+ HD  F+ LMR +E++ N     NS G AVGG+          P  L +  S     R  S+  R+  G A   RL
Sbjct:    4 LSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISKRNQGIQARDAVST------NYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGS----------PAALHDDDS---TSRNVSSGHRLGGGSAGTSRL 290          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|698812172|ref|XP_009839115.1| (hypothetical protein H257_13329 [Aphanomyces astaci] >gi|574105928|gb|ETV71449.1| hypothetical protein H257_13329 [Aphanomyces astaci])

HSP 1 Score: 170.244 bits (430), Expect = 6.210e-43
Identity = 93/207 (44.93%), Postives = 127/207 (61.35%), Query Frame = 0
Query:   49 PAHQKIICKGKKLTDPSIT-LGQLRADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNA 254
            P+  ++I KGK L D  +    Q  A   VI ++       ++ A      R+++IR    +    +    +S  A   +    Y F+ IE LP LP++  AR IL  LASDPG+L V+  +KW VGAL EMYP+G VGV  VCV+GLNENKGQRI LRLRTDDLLG+RK L++++VLFHEL+HN  + H+  F+ LMR +E + NA
Sbjct:   41 PSQLRLIVKGKILADDDVVDATQTAAAPAVIHILPSEHEIQNMLAREAEAKRIHDIRATRHVVSIQARNEHLSARAHASI---TYKFRDIETLPGLPNEPTARNILVSLASDPGILAVLAHHKWQVGALVEMYPDGKVGVDPVCVLGLNENKGQRIRLRLRTDDLLGFRKFLTIKQVLFHELSHNEVSDHNNDFYQLMRQVETECNA 244          

HSP 2 Score: 64.3142 bits (155), Expect = 3.584e-7
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 0
Query:  546 SEGSNAAFATLQSMLQALLEHPQELKFRRVRLNNAKFQRTVGRFPAAIDLLRDVGFQEREGGTVLEYTRGDPGLLWWGKCVVE 628
            S+   A  +TL ++L  +L +P + K++ +R +N +F RTVG   A+   L+ VGF E+   T     R DPGLLW GK  +E
Sbjct:  357 SQPPQATISTLMTLLSNILTNPTDPKYKSIRKDNPRFIRTVGSIVASHAFLQSVGFDEQ--ATHWTLLRNDPGLLWLGKSALE 437          
BLAST of EWM26815.1 vs. NCBI_GenBank
Match: gi|1026983086|ref|XP_016608111.1| (hypothetical protein SPPG_04414 [Spizellomyces punctatus DAOM BR117] >gi|907094328|gb|KND00072.1| hypothetical protein SPPG_04414 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 167.548 bits (423), Expect = 7.212e-43
Identity = 114/319 (35.74%), Postives = 164/319 (51.41%), Query Frame = 0
Query:   11 NSVEVNLSFKGQQDLLHLPASTTLADVQALAET--KTGIHPAHQKIICKGKKLTDPSITLGQLRADVEVIKLVLIGTTTASLAALAEAPARLNNIRIINDLGGNMSGGIKISTVAAPVLRPRKYGFQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPEGLVGVSSVCVMGLNENKGQRIFLRLRTDDLLGWRKALSVRKVLFHELAHNVHAAHDQPFHLLMRNIERDVNAFNSSGRAVG--GALHLPAEGGGMPGGLFEGGSGRLGGRGAS---TSARVMAGLAAIQRLSKEEQAIDDACGSG 322
            N +  +++ KG    L      T++DV+A   +     I P  QK++ KGK     + TL  +       KL+LIG++ A + A+ EA  R    +        +     I ++ +  +    Y F SI  LP   D+  A  +L  L  D G+  +M  +KWSVGAL E++P      S   ++G NENKGQRI LRLRTDDL G+R   S+RKVL HELAH VH+ H+  FH L R + R+ +A    GR +G  G  +   E   +    F GG+ RLGG   S    S R +   AA++RL++EE  + + CGSG
Sbjct:   17 NVISFSVTHKGTVVPLTFALLATISDVKAHLASLPSINIPPHAQKLLFKGKSSYAENATLASIGVKTNA-KLLLIGSSAAEIHAVQEATKRKQEAQARAASQRPVRPSQPIRSIGS--VDDANYTFHSIRPLPGFSDEKQATLLLKRLRDDAGIQSIMRNHKWSVGALVELHP------SERTILGYNENKGQRIALRLRTDDLDGFRYYDSIRKVLLHELAHMVHSDHNADFHALNRQLNRECDAVTRGGRTLGAKGEYYNSGEEEAVDAPAFMGGTFRLGGGSQSRDNKSQREILAEAALKRLTREEVELVEGCGSG 326          
The following BLAST results are available for this feature:
BLAST of EWM26815.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108906|gb|EWM26815.1|0.000e+0100.00Ubiquitin-associated/translation elongation factor... [more]
gi|298708712|emb|CBJ49209.1|4.013e-8633.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|698812170|ref|XP_009839114.1|1.003e-4344.93hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|675198529|ref|XP_008908149.1|1.142e-4340.14hypothetical protein, variant 3 [Phytophthora para... [more]
gi|1021054884|emb|SAM09376.1|1.394e-4336.61hypothetical protein [Absidia glauca][more]
gi|568015546|gb|ETL89723.1|1.660e-4340.14hypothetical protein, variant 3 [Phytophthora para... [more]
gi|567986176|gb|ETL36503.1|1.764e-4340.14hypothetical protein, variant 3 [Phytophthora para... [more]
gi|570980177|gb|ETP40926.1|2.247e-4339.09hypothetical protein, variant 3 [Phytophthora para... [more]
gi|698812172|ref|XP_009839115.1|6.210e-4344.93hypothetical protein H257_13329 [Aphanomyces astac... [more]
gi|1026983086|ref|XP_016608111.1|7.212e-4335.74hypothetical protein SPPG_04414 [Spizellomyces pun... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3879rna3879Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications