EWM30227.1, cds386 (CDS) Nannochloropsis gaditana

Overview
NameEWM30227.1
Unique Namecds386
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:946281..946307 +
Alignment locationCM002455.1:946428..949160 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30227.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g100.1744.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:946281..946307 +
CM002455.1supercontigCM002455.1:946428..949160 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|585112886|gb|EWM30227.1| (hypothetical protein Naga_100003g100 [Nannochloropsis gaditana])

HSP 1 Score: 1843.55 bits (4774), Expect = 0.000e+0
Identity = 919/919 (100.00%), Postives = 919/919 (100.00%), Query Frame = 0
Query:    1 MLLVRVKAESSVSDFDADSARRSPPFVAEPGLSLRINCAKAADKFGDALAQHTESLKSTNSASFVIDAEGIILSRQVPMMEMPTNRSGPGTDSGEKCPNPPTVGALVTTTLSPKSESPKRVAVPTLGAPVAAPPASAVAVAARGHGSSLQNGLPARNGDGGSSLTPTSGPREFLQVASKPPGTEMPALDASTSGLIHKPASSDAATALSQHHDALIQRELNAIIGQKREHRDRSEESTVLLPSTSPISVPVPRHQSSARPGPGPASHALPASPPAQAGSNARGSGQTVSNRSPPSANAQALMPPTRHSTRGATAAAAAGISKSIEEACHAAALEDGVLSSKGGGALNAGYGNAKQGSVVSPGETSALTSANKAGKVKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNSVAGSKHGKDSAAGQVAPEVPRRQQEYLGPDGRIVGNPVLPPWMLPPAAQAANEGEPASASTTPRSNCSSGINSGFRGAAGPNSTKGTSRHHQNIAPEHTGATLHHISHLHQPSGLRRGPGGSDTGILSVTAATNMPRTDSQDSLSVLGRTISADALGHLTDFPHTTSLGDLAGLNMFTSSPFPSTDNLLSLHQHQHQQTVAAAPRGHTTLSAHNATSVAAAAAAAAVAPSSTSISRNTGDSAPRGPNVSGHGSQLPMSTTRGTVATVTQNPVITATARNAGGANTAGSVSSTTTTQKRIPRVDSATGLSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPDKDLLSKCVFPQNSAARAAQTAASQQAAVAFTGIGKPSVILAGGVKVEGGAPTGPIPGDSHDVAGGKRDRGDTLPTISTGSSAMGARLKQPKIER 919
            MLLVRVKAESSVSDFDADSARRSPPFVAEPGLSLRINCAKAADKFGDALAQHTESLKSTNSASFVIDAEGIILSRQVPMMEMPTNRSGPGTDSGEKCPNPPTVGALVTTTLSPKSESPKRVAVPTLGAPVAAPPASAVAVAARGHGSSLQNGLPARNGDGGSSLTPTSGPREFLQVASKPPGTEMPALDASTSGLIHKPASSDAATALSQHHDALIQRELNAIIGQKREHRDRSEESTVLLPSTSPISVPVPRHQSSARPGPGPASHALPASPPAQAGSNARGSGQTVSNRSPPSANAQALMPPTRHSTRGATAAAAAGISKSIEEACHAAALEDGVLSSKGGGALNAGYGNAKQGSVVSPGETSALTSANKAGKVKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNSVAGSKHGKDSAAGQVAPEVPRRQQEYLGPDGRIVGNPVLPPWMLPPAAQAANEGEPASASTTPRSNCSSGINSGFRGAAGPNSTKGTSRHHQNIAPEHTGATLHHISHLHQPSGLRRGPGGSDTGILSVTAATNMPRTDSQDSLSVLGRTISADALGHLTDFPHTTSLGDLAGLNMFTSSPFPSTDNLLSLHQHQHQQTVAAAPRGHTTLSAHNATSVAAAAAAAAVAPSSTSISRNTGDSAPRGPNVSGHGSQLPMSTTRGTVATVTQNPVITATARNAGGANTAGSVSSTTTTQKRIPRVDSATGLSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPDKDLLSKCVFPQNSAARAAQTAASQQAAVAFTGIGKPSVILAGGVKVEGGAPTGPIPGDSHDVAGGKRDRGDTLPTISTGSSAMGARLKQPKIER
Sbjct:    1 MLLVRVKAESSVSDFDADSARRSPPFVAEPGLSLRINCAKAADKFGDALAQHTESLKSTNSASFVIDAEGIILSRQVPMMEMPTNRSGPGTDSGEKCPNPPTVGALVTTTLSPKSESPKRVAVPTLGAPVAAPPASAVAVAARGHGSSLQNGLPARNGDGGSSLTPTSGPREFLQVASKPPGTEMPALDASTSGLIHKPASSDAATALSQHHDALIQRELNAIIGQKREHRDRSEESTVLLPSTSPISVPVPRHQSSARPGPGPASHALPASPPAQAGSNARGSGQTVSNRSPPSANAQALMPPTRHSTRGATAAAAAGISKSIEEACHAAALEDGVLSSKGGGALNAGYGNAKQGSVVSPGETSALTSANKAGKVKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNSVAGSKHGKDSAAGQVAPEVPRRQQEYLGPDGRIVGNPVLPPWMLPPAAQAANEGEPASASTTPRSNCSSGINSGFRGAAGPNSTKGTSRHHQNIAPEHTGATLHHISHLHQPSGLRRGPGGSDTGILSVTAATNMPRTDSQDSLSVLGRTISADALGHLTDFPHTTSLGDLAGLNMFTSSPFPSTDNLLSLHQHQHQQTVAAAPRGHTTLSAHNATSVAAAAAAAAVAPSSTSISRNTGDSAPRGPNVSGHGSQLPMSTTRGTVATVTQNPVITATARNAGGANTAGSVSSTTTTQKRIPRVDSATGLSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPDKDLLSKCVFPQNSAARAAQTAASQQAAVAFTGIGKPSVILAGGVKVEGGAPTGPIPGDSHDVAGGKRDRGDTLPTISTGSSAMGARLKQPKIER 919          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|299116677|emb|CBN74822.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 211.075 bits (536), Expect = 4.932e-53
Identity = 114/182 (62.64%), Postives = 125/182 (68.68%), Query Frame = 0
Query:  375 KVKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKN-SVAGSKHGKDSAAGQVAPEVPRRQQEYLGPDGRIVGNPVLPPWMLPPAAQAAN-EGEPASASTTPRSNCS 554
            K  NGLRRGKWT EEE YANRLI EFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR QAD+DRL   +IERSR +LA+LERRFLERVA TNRCK     GSK G  S+   + P  P                P   PWMLPP+  A    G  + A+ T R+N +
Sbjct:  258 KKPNGLRRGKWTSEEEDYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRR-QADMDRLQPADIERSRSQLADLERRFLERVAMTNRCKTGGEIGSKEG-GSSFDLLRPNQP---------------PPATQPWMLPPSPPAVTLAGTLSPAAATQRANVA 422          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|219114337|ref|XP_002176339.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402585|gb|EEC42575.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 204.912 bits (520), Expect = 1.851e-52
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0
Query:  380 LRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNSVAG 489
            LRRGKWTPEEEAYANRLI+EFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR  ADL+RL+ ++I++SR EL+ELERRFLERVAQTNR K+S  G
Sbjct:   55 LRRGKWTPEEEAYANRLILEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRR-TADLNRLTPEQIQQSRAELSELERRFLERVAQTNRVKSSGVG 163          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|1210524275|dbj|GAX17004.1| (hypothetical protein FisN_5Hh386 [Fistulifera solaris])

HSP 1 Score: 199.134 bits (505), Expect = 2.480e-50
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 0
Query:  380 LRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNS 486
            LRRGKWTPEEEAYANRLI EFK+GLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR  ADL+RL+ ++I++SR EL+ELERRFLERVAQTNR K+S
Sbjct:   76 LRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGGNCIGKQVFRRR-TADLNRLTPEQIQKSRAELSELERRFLERVAQTNRVKSS 181          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|1210515777|dbj|GAX25300.1| (hypothetical protein FisN_5Lh386 [Fistulifera solaris])

HSP 1 Score: 198.749 bits (504), Expect = 4.321e-50
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 0
Query:  380 LRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNS 486
            LRRGKWTPEEEAYANRLI EFK+GLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR  ADL+RL+ ++I++SR EL+ELERRFLERVAQTNR K+S
Sbjct:   75 LRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGGNCIGKQVFRRR-TADLNRLTPEQIQKSRAELSELERRFLERVAQTNRVKSS 180          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|1072233541|gb|OEU18271.1| (hypothetical protein FRACYDRAFT_260330 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 200.29 bits (508), Expect = 1.908e-49
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 0
Query:  380 LRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCK 484
            LRRGKWTPEEEAYANRLI EFK+GLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR  ADL+RL+ ++I++SR EL++LERRFLERVAQTNR K
Sbjct:   47 LRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRR-TADLNRLTPEQIQKSRAELSDLERRFLERVAQTNRVK 150          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|676383901|ref|XP_009035229.1| (hypothetical protein AURANDRAFT_62630 [Aureococcus anophagefferens] >gi|323454561|gb|EGB10431.1| hypothetical protein AURANDRAFT_62630 [Aureococcus anophagefferens])

HSP 1 Score: 200.675 bits (509), Expect = 2.308e-49
Identity = 104/160 (65.00%), Postives = 116/160 (72.50%), Query Frame = 0
Query:  377 KNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNRCKNSVAGSKHGKDSAAGQVAPEVPRRQQEYLGPDGRIVGNPVLPPWMLPPAAQA 536
            +NGLRRGKWT EEEAYANRLI EFK GLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR QAD+DRL+ D+I+RSR ELAELERRFL RVAQ++R   S      G     G+       + Q+           P+L PW+LPP A A
Sbjct:  588 ENGLRRGKWTVEEEAYANRLIHEFKLGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRR-QADMDRLTPDDIKRSRYELAELERRFLTRVAQSHRSAKSGGAGAKGVKGGDGKALGGGLMQAQQ----------RPMLAPWLLPPHAAA 736          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|299117483|emb|CBN73986.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 176.792 bits (447), Expect = 2.269e-45
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 0
Query:  379 GLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDR--LSTDEIERSRQELAELERRFLERVAQT 480
            GLRRGKWTPEEE YANRLI EFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKFVG NCIGKQVFRR+Q  D D   LS + +++SR ELAELER+FLERVA+T
Sbjct:  115 GLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQVFRRQQGVDEDSSPLSEEAMDKSRAELAELERKFLERVAET 218          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|223994807|ref|XP_002287087.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978402|gb|EED96728.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 177.948 bits (450), Expect = 5.246e-43
Identity = 78/103 (75.73%), Postives = 92/103 (89.32%), Query Frame = 0
Query:  380 LRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAELERRFLERVAQTNR 482
            LRRGKWT EEEAYA+RLI EFK+GLLPLTDGTTLRTFLSKLLNCDPMRISKKFVG NCIGKQVFRRR  AD++ L+  +I+++R EL+ELE+RFL+RV+Q  +
Sbjct:  116 LRRGKWTAEEEAYASRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRR-GADVNNLTPAQIQQTRLELSELEKRFLDRVSQNKK 217          
BLAST of EWM30227.1 vs. NCBI_GenBank
Match: gi|397627741|gb|EJK68601.1| (hypothetical protein THAOC_10204 [Thalassiosira oceanica])

HSP 1 Score: 152.14 bits (383), Expect = 1.236e-37
Identity = 73/108 (67.59%), Postives = 86/108 (79.63%), Query Frame = 0
Query:  361 PGETSALTSANKAGKVKNGLRRGKWTPEEEAYANRLIVEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQQADLDRLSTDEIERSRQELAE 468
            P + S++++  K G+    LRRGKWT EEEAYA RLI EFKSGLLPLTDGTTLR FLSKLLNCDPMRISKKFVG NCIGKQVFRR+  AD++ L+  +I + R EL+E
Sbjct:  160 PPDASSISTKKKGGQ---PLRRGKWTTEEEAYAARLIHEFKSGLLPLTDGTTLRNFLSKLLNCDPMRISKKFVGNNCIGKQVFRRK-VADINSLTPAQISQIRVELSE 263          
The following BLAST results are available for this feature:
BLAST of EWM30227.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112886|gb|EWM30227.1|0.000e+0100.00hypothetical protein Naga_100003g100 [Nannochlorop... [more]
gi|299116677|emb|CBN74822.1|4.932e-5362.64conserved unknown protein [Ectocarpus siliculosus][more]
gi|219114337|ref|XP_002176339.1|1.851e-5284.55predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210524275|dbj|GAX17004.1|2.480e-5085.05hypothetical protein FisN_5Hh386 [Fistulifera sola... [more]
gi|1210515777|dbj|GAX25300.1|4.321e-5085.05hypothetical protein FisN_5Lh386 [Fistulifera sola... [more]
gi|1072233541|gb|OEU18271.1|1.908e-4984.76hypothetical protein FRACYDRAFT_260330 [Fragilario... [more]
gi|676383901|ref|XP_009035229.1|2.308e-4965.00hypothetical protein AURANDRAFT_62630 [Aureococcus... [more]
gi|299117483|emb|CBN73986.1|2.269e-4578.85conserved unknown protein [Ectocarpus siliculosus][more]
gi|223994807|ref|XP_002287087.1|5.246e-4375.73predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397627741|gb|EJK68601.1|1.236e-3767.59hypothetical protein THAOC_10204 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna386rna386Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications