EWM26792.1, cds3837 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|585108883|gb|EWM26792.1| (ribose-5-phosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 478.789 bits (1231), Expect = 6.750e-171 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct: 1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|553183958|ref|XP_005854001.1| (ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526] >gi|422295057|gb|EKU22356.1| ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 459.144 bits (1180), Expect = 1.868e-162 Identity = 236/281 (83.99%), Postives = 236/281 (83.99%), Query Frame = 0
Query: 1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct: 1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKAGELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|585108884|gb|EWM26793.1| (ribose-5-phosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 317.005 bits (811), Expect = 2.899e-107 Identity = 155/160 (96.88%), Postives = 156/160 (97.50%), Query Frame = 0
Query: 77 STAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
S + VERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct: 54 SNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|299470524|emb|CBN78515.1| (Ribose-5-phosphate isomerase [Ectocarpus siliculosus]) HSP 1 Score: 261.922 bits (668), Expect = 3.300e-85 Identity = 141/233 (60.52%), Postives = 153/233 (65.67%), Query Frame = 0
Query: 48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINK 235
SQDELKKQVGYKSVDDYV SGMVVGLGTGSTAAFAVERLG LK+ DP LNLVKGRGGALLREKMVEVCAKKFIVIVDDSK VPGLG++GAMPVE+TPFC EHT T+ LP +KG KLR + KPYVTDNDNYIVDLY+TDPI D + + VGVVEHG FLDM+ AVI AG +GI V K
Sbjct: 3 SQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKG-CDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVKTK 234
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|544215034|ref|XP_005537663.1| (ribose 5-phosphate isomerase [Cyanidioschyzon merolae strain 10D] >gi|449018225|dbj|BAM81627.1| ribose 5-phosphate isomerase [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 245.358 bits (625), Expect = 1.216e-77 Identity = 131/228 (57.46%), Postives = 146/228 (64.04%), Query Frame = 0
Query: 48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGI 230
S D+LKKQVGYK+VDDYV+SGMVVGLGTGSTAAFAVERLG KL A D ALNLVKGRGGALLREKMVEVCAK+FIVIVD+SK+VPGLGV+GAMPVE+TPFC +HT R I LP + G R YVTDN NYIVDLY+ PIAD A+AL VGVVEHG FLDM + VIVAG +G+
Sbjct: 71 SADDLKKQVGYKAVDDYVRSGMVVGLGTGSTAAFAVERLGQKLAAGALRDIRCVPTSVRTEEQARSLNIPLTTLDEDAELDVAIDGADEVDSALNLVKGRGGALLREKMVEVCAKQFIVIVDESKLVPGLGVSGAMPVEVTPFCWQHTMRKIAALPALAGCRAEARRDAAGALYVTDNGNYIVDLYFEKPIADAYQAAQALRDTVGVVEHGLFLDMASVVIVAGAQGV 298
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|223995243|ref|XP_002287305.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976421|gb|EED94748.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 234.572 bits (597), Expect = 8.160e-74 Identity = 134/249 (53.82%), Postives = 152/249 (61.04%), Query Frame = 0
Query: 37 QRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEV 232
R S++ R A+SQDELKK VGYKSVDDYV+SGMVVGLGTGSTA FAVERLG KLK+ DP LNLVKG GGALLREKMVEVCA KFIVIVD+SK+ GLG +PVEITPFCH HT TI LP G LRM DGD+ VTDN NYIVDL++T+PI D +A+ L+ VGVV+HG F MTTAVI+AG +GI V
Sbjct: 26 SRVSTSIRMALSQDELKKMVGYKSVDDYVKSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSVRTKEQAEELGIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCADKFIVIVDESKLCDGLGPGFPLPVEITPFCHIHTLNTIAALPSCAGCK-AVLRMGSSSTNKPDGDEIAVTDNGNYIVDLHFTEPIKDAPTMAKELKNTVGVVDHGLFCGMTTAVIIAGSDGISV 273
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|77024233|gb|ABA55587.1| (chloroplast ribulose phosphate isomerase, partial [Pavlova lutheri]) HSP 1 Score: 233.417 bits (594), Expect = 2.369e-73 Identity = 129/239 (53.97%), Postives = 149/239 (62.34%), Query Frame = 0
Query: 48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKG---------AATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEV 232
+QDELKK GYK+VDDYV+SGMVVGLGTGSTAAFAVER+GMKLK+ DP LNL+KG GGALLREKMVEVCAKKFIVIVDD+K+ GLG + +PVEITPFC EHT R + P G AATG ++DG P VTDNDNYIVDL++ PIAD A+A L+ VGVV+HG F MTTA I+AGK+GI V
Sbjct: 37 TQDELKKLAGYKAVDDYVRSGMVVGLGTGSTAAFAVERVGMKLKSGELKDIIAIPTSVRTKEQAEALGIPLVTLGTHSDLDVAIDGADAVDPRLNLIKGGGGALLREKMVEVCAKKFIVIVDDTKLCAGLGPSFPLPVEITPFCWEHTLRKVAACPAAAGCEAKLRLGSAATGS-KVDGTDPAVTDNDNYIVDLFFKQPIADPVALAAQLKATVGVVDHGLFCGMTTACIIAGKDGISV 274
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|1189379739|gb|OSX68429.1| (hypothetical protein BU14_2821s0001 [Porphyra umbilicalis]) HSP 1 Score: 233.802 bits (595), Expect = 2.379e-73 Identity = 128/231 (55.41%), Postives = 150/231 (64.94%), Query Frame = 0
Query: 48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKL---------------------------------------------KADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVI 233
S +ELKK GYKSVDD+V SGMVVGLGTGSTA +AVERLG KL + D LNLVKGRGGALLREKMVEV AKKF+VIVDD+K+VPGLG++GAMPVE+TPFC + T +LEL + G T K+R DG KPYVTDNDNYIVDLY+T+PIAD + +VGVVEHG FL MT+ VIVAG +G++VI
Sbjct: 58 SVEELKKATGYKSVDDHVTSGMVVGLGTGSTAYYAVERLGQKLASGELTDIVAIPTSIRTKEQAESLNIPLVSLDTHPVLDVAIDGADEVDGDLNLVKGRGGALLREKMVEVSAKKFVVIVDDTKLVPGLGISGAMPVEVTPFCVDFTVARLLELGSIAG-CTAKVRDDGGKPYVTDNDNYIVDLYFTEPIADAVKAGEEINALVGVVEHGLFLGMTSEVIVAGADGVKVI 287
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|397575631|gb|EJK49799.1| (hypothetical protein THAOC_31290 [Thalassiosira oceanica]) HSP 1 Score: 233.032 bits (593), Expect = 3.534e-72 Identity = 133/241 (55.19%), Postives = 148/241 (61.41%), Query Frame = 0
Query: 43 ARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLK---------------------------------------------ADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGI 230
A A+SQDELKK VGYKSVDDYV+SGMVVGLGTGSTA FAVERLG KLK DP LNLVKG GGALLREKMVEVCA KFIVIVD+SK+ GLG +PVEITPFCHEHT RTI LP +G LRM DGD+ VTDN NYIVDL++ + I D A+A L+ VGVV+HG F DMTTAVI+AG +GI
Sbjct: 38 AETALSQDELKKMVGYKSVDDYVESGMVVGLGTGSTAYFAVERLGQKLKDGELKDIVAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCADKFIVIVDESKLCDGLGPGFPLPVEITPFCHEHTLRTIASLPTCEG-CDAVLRMGSSSTNKPDGDEIAVTDNGNYIVDLHFKEAIKDAPAMASELKNTVGVVDHGLFCDMTTAVIIAGSDGI 277
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|1210513441|dbj|GAX27838.1| (ribose 5-phosphate isomerase A [Fistulifera solaris]) HSP 1 Score: 225.328 bits (573), Expect = 2.773e-70 Identity = 127/249 (51.00%), Postives = 148/249 (59.44%), Query Frame = 0
Query: 41 STARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
ST A SQDELKK VGYK+VDDYV+SGMVVGLGTGSTA +AVER+G KLK+ DP LNL KG GGAL REK+VEVCA KFIVIVD+SK+ GLG +PVEI PFCHEHT R I LP KG LR+ DGD+P VTDN NYIVDL++ +PI D + + ++ VVGVVEHG F M+TAVI+AG +GI V K
Sbjct: 28 STRIMATSQDELKKLVGYKAVDDYVKSGMVVGLGTGSTAYYAVERVGEKLKSGELKDILAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPELNLTKGGGGALFREKIVEVCADKFIVIVDESKLCDGLGPGFPIPVEIVPFCHEHTMRMIGNLPSCKGKCKPVLRLGSAANNKVDGDEPAVTDNGNYIVDLHFEEPIKDPTTMGKEIKNVVGVVEHGLFCGMSTAVIIAGSDGISVKEAK 276 The following BLAST results are available for this feature:
BLAST of EWM26792.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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