EWM26792.1, cds3837 (CDS) Nannochloropsis gaditana

Overview
NameEWM26792.1
Unique Namecds3837
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:200725..200971 +
Alignment locationCM002462.1:201313..201342 +
Alignment locationCM002462.1:201478..201539 +
Alignment locationCM002462.1:201858..202229 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26792.1
Productribose-5-phosphate isomerase
Orig transcript idgnl|cribi|Naga_100018g63.2772.mrna
GeneRPI
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:200725..200971 +
CM002462.1supercontigCM002462.1:201313..201342 +
CM002462.1supercontigCM002462.1:201478..201539 +
CM002462.1supercontigCM002462.1:201858..202229 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004751ribose-5-phosphate isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0009052pentose-phosphate shunt, non-oxidative branch
Vocabulary: INTERPRO
TermDefinition
IPR004788Ribose5P_isomerase_typA
Homology
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|585108883|gb|EWM26792.1| (ribose-5-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 478.789 bits (1231), Expect = 6.750e-171
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
            MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct:    1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|553183958|ref|XP_005854001.1| (ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526] >gi|422295057|gb|EKU22356.1| ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 459.144 bits (1180), Expect = 1.868e-162
Identity = 236/281 (83.99%), Postives = 236/281 (83.99%), Query Frame = 0
Query:    1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
            MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA                                             DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct:    1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKAGELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|585108884|gb|EWM26793.1| (ribose-5-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 317.005 bits (811), Expect = 2.899e-107
Identity = 155/160 (96.88%), Postives = 156/160 (97.50%), Query Frame = 0
Query:   77 STAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
            S +   VERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct:   54 SNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|299470524|emb|CBN78515.1| (Ribose-5-phosphate isomerase [Ectocarpus siliculosus])

HSP 1 Score: 261.922 bits (668), Expect = 3.300e-85
Identity = 141/233 (60.52%), Postives = 153/233 (65.67%), Query Frame = 0
Query:   48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINK 235
            SQDELKKQVGYKSVDDYV SGMVVGLGTGSTAAFAVERLG  LK+                                             DP LNLVKGRGGALLREKMVEVCAKKFIVIVDDSK VPGLG++GAMPVE+TPFC EHT  T+  LP +KG    KLR +  KPYVTDNDNYIVDLY+TDPI D     + +   VGVVEHG FLDM+ AVI AG +GI V  K
Sbjct:    3 SQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKG-CDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVKTK 234          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|544215034|ref|XP_005537663.1| (ribose 5-phosphate isomerase [Cyanidioschyzon merolae strain 10D] >gi|449018225|dbj|BAM81627.1| ribose 5-phosphate isomerase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 245.358 bits (625), Expect = 1.216e-77
Identity = 131/228 (57.46%), Postives = 146/228 (64.04%), Query Frame = 0
Query:   48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGI 230
            S D+LKKQVGYK+VDDYV+SGMVVGLGTGSTAAFAVERLG KL A                                             D ALNLVKGRGGALLREKMVEVCAK+FIVIVD+SK+VPGLGV+GAMPVE+TPFC +HT R I  LP + G      R      YVTDN NYIVDLY+  PIAD    A+AL   VGVVEHG FLDM + VIVAG +G+
Sbjct:   71 SADDLKKQVGYKAVDDYVRSGMVVGLGTGSTAAFAVERLGQKLAAGALRDIRCVPTSVRTEEQARSLNIPLTTLDEDAELDVAIDGADEVDSALNLVKGRGGALLREKMVEVCAKQFIVIVDESKLVPGLGVSGAMPVEVTPFCWQHTMRKIAALPALAGCRAEARRDAAGALYVTDNGNYIVDLYFEKPIADAYQAAQALRDTVGVVEHGLFLDMASVVIVAGAQGV 298          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|223995243|ref|XP_002287305.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976421|gb|EED94748.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 234.572 bits (597), Expect = 8.160e-74
Identity = 134/249 (53.82%), Postives = 152/249 (61.04%), Query Frame = 0
Query:   37 QRASSTARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEV 232
             R S++ R A+SQDELKK VGYKSVDDYV+SGMVVGLGTGSTA FAVERLG KLK+                                             DP LNLVKG GGALLREKMVEVCA KFIVIVD+SK+  GLG    +PVEITPFCH HT  TI  LP   G     LRM        DGD+  VTDN NYIVDL++T+PI D   +A+ L+  VGVV+HG F  MTTAVI+AG +GI V
Sbjct:   26 SRVSTSIRMALSQDELKKMVGYKSVDDYVKSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSVRTKEQAEELGIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCADKFIVIVDESKLCDGLGPGFPLPVEITPFCHIHTLNTIAALPSCAGCK-AVLRMGSSSTNKPDGDEIAVTDNGNYIVDLHFTEPIKDAPTMAKELKNTVGVVDHGLFCGMTTAVIIAGSDGISV 273          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|77024233|gb|ABA55587.1| (chloroplast ribulose phosphate isomerase, partial [Pavlova lutheri])

HSP 1 Score: 233.417 bits (594), Expect = 2.369e-73
Identity = 129/239 (53.97%), Postives = 149/239 (62.34%), Query Frame = 0
Query:   48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKG---------AATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEV 232
            +QDELKK  GYK+VDDYV+SGMVVGLGTGSTAAFAVER+GMKLK+                                             DP LNL+KG GGALLREKMVEVCAKKFIVIVDD+K+  GLG +  +PVEITPFC EHT R +   P   G         AATG  ++DG  P VTDNDNYIVDL++  PIAD  A+A  L+  VGVV+HG F  MTTA I+AGK+GI V
Sbjct:   37 TQDELKKLAGYKAVDDYVRSGMVVGLGTGSTAAFAVERVGMKLKSGELKDIIAIPTSVRTKEQAEALGIPLVTLGTHSDLDVAIDGADAVDPRLNLIKGGGGALLREKMVEVCAKKFIVIVDDTKLCAGLGPSFPLPVEITPFCWEHTLRKVAACPAAAGCEAKLRLGSAATGS-KVDGTDPAVTDNDNYIVDLFFKQPIADPVALAAQLKATVGVVDHGLFCGMTTACIIAGKDGISV 274          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|1189379739|gb|OSX68429.1| (hypothetical protein BU14_2821s0001 [Porphyra umbilicalis])

HSP 1 Score: 233.802 bits (595), Expect = 2.379e-73
Identity = 128/231 (55.41%), Postives = 150/231 (64.94%), Query Frame = 0
Query:   48 SQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKL---------------------------------------------KADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVI 233
            S +ELKK  GYKSVDD+V SGMVVGLGTGSTA +AVERLG KL                                             + D  LNLVKGRGGALLREKMVEV AKKF+VIVDD+K+VPGLG++GAMPVE+TPFC + T   +LEL  + G  T K+R DG KPYVTDNDNYIVDLY+T+PIAD       +  +VGVVEHG FL MT+ VIVAG +G++VI
Sbjct:   58 SVEELKKATGYKSVDDHVTSGMVVGLGTGSTAYYAVERLGQKLASGELTDIVAIPTSIRTKEQAESLNIPLVSLDTHPVLDVAIDGADEVDGDLNLVKGRGGALLREKMVEVSAKKFVVIVDDTKLVPGLGISGAMPVEVTPFCVDFTVARLLELGSIAG-CTAKVRDDGGKPYVTDNDNYIVDLYFTEPIADAVKAGEEINALVGVVEHGLFLGMTSEVIVAGADGVKVI 287          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|397575631|gb|EJK49799.1| (hypothetical protein THAOC_31290 [Thalassiosira oceanica])

HSP 1 Score: 233.032 bits (593), Expect = 3.534e-72
Identity = 133/241 (55.19%), Postives = 148/241 (61.41%), Query Frame = 0
Query:   43 ARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLK---------------------------------------------ADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGI 230
            A  A+SQDELKK VGYKSVDDYV+SGMVVGLGTGSTA FAVERLG KLK                                              DP LNLVKG GGALLREKMVEVCA KFIVIVD+SK+  GLG    +PVEITPFCHEHT RTI  LP  +G     LRM        DGD+  VTDN NYIVDL++ + I D  A+A  L+  VGVV+HG F DMTTAVI+AG +GI
Sbjct:   38 AETALSQDELKKMVGYKSVDDYVESGMVVGLGTGSTAYFAVERLGQKLKDGELKDIVAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCADKFIVIVDESKLCDGLGPGFPLPVEITPFCHEHTLRTIASLPTCEG-CDAVLRMGSSSTNKPDGDEIAVTDNGNYIVDLHFKEAIKDAPAMASELKNTVGVVDHGLFCDMTTAVIIAGSDGI 277          
BLAST of EWM26792.1 vs. NCBI_GenBank
Match: gi|1210513441|dbj|GAX27838.1| (ribose 5-phosphate isomerase A [Fistulifera solaris])

HSP 1 Score: 225.328 bits (573), Expect = 2.773e-70
Identity = 127/249 (51.00%), Postives = 148/249 (59.44%), Query Frame = 0
Query:   41 STARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
            ST   A SQDELKK VGYK+VDDYV+SGMVVGLGTGSTA +AVER+G KLK+                                             DP LNL KG GGAL REK+VEVCA KFIVIVD+SK+  GLG    +PVEI PFCHEHT R I  LP  KG     LR+        DGD+P VTDN NYIVDL++ +PI D   + + ++ VVGVVEHG F  M+TAVI+AG +GI V   K
Sbjct:   28 STRIMATSQDELKKLVGYKAVDDYVKSGMVVGLGTGSTAYYAVERVGEKLKSGELKDILAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPELNLTKGGGGALFREKIVEVCADKFIVIVDESKLCDGLGPGFPIPVEIVPFCHEHTMRMIGNLPSCKGKCKPVLRLGSAANNKVDGDEPAVTDNGNYIVDLHFEEPIKDPTTMGKEIKNVVGVVEHGLFCGMSTAVIIAGSDGISVKEAK 276          
The following BLAST results are available for this feature:
BLAST of EWM26792.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108883|gb|EWM26792.1|6.750e-171100.00ribose-5-phosphate isomerase [Nannochloropsis gadi... [more]
gi|553183958|ref|XP_005854001.1|1.868e-16283.99ribose 5-phosphate isomerase A [Nannochloropsis ga... [more]
gi|585108884|gb|EWM26793.1|2.899e-10796.88ribose-5-phosphate isomerase [Nannochloropsis gadi... [more]
gi|299470524|emb|CBN78515.1|3.300e-8560.52Ribose-5-phosphate isomerase [Ectocarpus siliculos... [more]
gi|544215034|ref|XP_005537663.1|1.216e-7757.46ribose 5-phosphate isomerase [Cyanidioschyzon mero... [more]
gi|223995243|ref|XP_002287305.1|8.160e-7453.82predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|77024233|gb|ABA55587.1|2.369e-7353.97chloroplast ribulose phosphate isomerase, partial ... [more]
gi|1189379739|gb|OSX68429.1|2.379e-7355.41hypothetical protein BU14_2821s0001 [Porphyra umbi... [more]
gi|397575631|gb|EJK49799.1|3.534e-7255.19hypothetical protein THAOC_31290 [Thalassiosira oc... [more]
gi|1210513441|dbj|GAX27838.1|2.773e-7051.00ribose 5-phosphate isomerase A [Fistulifera solari... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3846rna3846Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications