EWM26801.1, cds3835 (CDS) Nannochloropsis gaditana

Overview
NameEWM26801.1
Unique Namecds3835
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:199891..200013 -
Alignment locationCM002462.1:199528..199686 -
Alignment locationCM002462.1:198917..199300 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26801.1
Productglycine cleavage system h protein
Orig transcript idgnl|cribi|Naga_100018g64.2781.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:199891..200013 -
CM002462.1supercontigCM002462.1:199528..199686 -
CM002462.1supercontigCM002462.1:198917..199300 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR002930GCV_H
Homology
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|585108892|gb|EWM26801.1| (glycine cleavage system h protein [Nannochloropsis gaditana])

HSP 1 Score: 445.277 bits (1144), Expect = 3.790e-158
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MSYSYHKSFRIFDALFRAFSPKNFTMLATATRHVARRIACSSTVFQPTLRRTIATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPLWLRRVCQGRQRRVRARLRRDHRVECVPFRGPRECEQRRGNRRVVHEVQGDRQGRIRGIDGRSGLQKTYRDGIGARSDKRDVWMIASVGRAVIVIHTEEKERGRREQGRGGTLVGGRRTTAWTRW 221
            MSYSYHKSFRIFDALFRAFSPKNFTMLATATRHVARRIACSSTVFQPTLRRTIATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPLWLRRVCQGRQRRVRARLRRDHRVECVPFRGPRECEQRRGNRRVVHEVQGDRQGRIRGIDGRSGLQKTYRDGIGARSDKRDVWMIASVGRAVIVIHTEEKERGRREQGRGGTLVGGRRTTAWTRW
Sbjct:    1 MSYSYHKSFRIFDALFRAFSPKNFTMLATATRHVARRIACSSTVFQPTLRRTIATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPLWLRRVCQGRQRRVRARLRRDHRVECVPFRGPRECEQRRGNRRVVHEVQGDRQGRIRGIDGRSGLQKTYRDGIGARSDKRDVWMIASVGRAVIVIHTEEKERGRREQGRGGTLVGGRRTTAWTRW 221          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|553183964|ref|XP_005854003.1| (glycine cleavage system h protein [Nannochloropsis gaditana CCMP526] >gi|422295059|gb|EKU22358.1| glycine cleavage system h protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 142.51 bits (358), Expect = 1.408e-39
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0
Query:   26 MLATATRHVARRIACSSTVFQPTLRRTIATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPE 94
            MLATATRHVARRIACSSTVFQPTLRRT+ATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPE
Sbjct:    1 MLATATRHVARRIACSSTVFQPTLRRTLATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPE 69          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|524700074|emb|CDE07141.1| (glycine cleavage system H protein [Prevotella sp. CAG:485])

HSP 1 Score: 72.4034 bits (176), Expect = 6.883e-13
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 0
Query:   49 LRRTIATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPE 94
            + + +A   YA SHEWVK+DGDIATVGITD+A  ALG++VYVD+PE
Sbjct:    1 MSKVLAELLYADSHEWVKIDGDIATVGITDYAQHALGNIVYVDMPE 46          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|212538387|ref|XP_002149349.1| (glycine cleavage system H protein [Talaromyces marneffei ATCC 18224] >gi|210069091|gb|EEA23182.1| glycine cleavage system H protein [Talaromyces marneffei ATCC 18224] >gi|679998944|gb|KFX51126.1| Glycine cleavage system H protein [Talaromyces marneffei PM1])

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   27 LATATRHVARRIACSSTVFQPTLRRTIA------------------TTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPL 97
            LA  TR +A R+ C         RRT+                     +Y  SHEWV+LDG+IAT+GITD+AAKALGDVVYV+LP   L
Sbjct:    3 LAAVTRPLASRMLCQRLPVSVAARRTLPAFPRGTSMRNFSRSSQLEVKKYTESHEWVELDGNIATIGITDYAAKALGDVVYVELPTADL 91          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|655969625|ref|WP_029012217.1| (glycine cleavage system protein H [Niveispirillum irakense])

HSP 1 Score: 70.0922 bits (170), Expect = 5.407e-12
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 0
Query:   55 TTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPLWLRRVCQGRQRRVRARLRRDHRVECVPFRGPRECEQRRGNRRVVHE---VQGDRQG 150
            T R+   HEW+KLDGD+ATVGITD+A +ALGDVV+V++PE     R + +G+   V   ++    V       P +     GN  V  E   V  D +G
Sbjct:    2 TIRFTQDHEWIKLDGDVATVGITDYAQQALGDVVFVEVPEAG---RELTKGKDAAVVESVKAASEV-----YAPVDGTVVEGNAAVADEPSLVNTDPEG 92          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|748560868|dbj|GAM33375.1| (glycine cleavage system H protein [Talaromyces cellulolyticus])

HSP 1 Score: 71.2478 bits (173), Expect = 5.426e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   27 LATATRHVARRIACSSTVFQPTLRRTIA------------------TTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPL 97
            LA  TR +A R+ C         RRTI                     +Y  SHEWV+LDG++AT+GIT++AAK+LGDVVYV+LP   L
Sbjct:    3 LAAVTRPLASRMLCQRLPVSVAARRTIPAFPRGTAMRNFSRSSQFEVKKYTESHEWVELDGNVATIGITEYAAKSLGDVVYVELPTADL 91          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|973323272|gb|KUL83167.1| (hypothetical protein ZTR_10087 [Talaromyces verruculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 5.540e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   27 LATATRHVARRIACSSTVFQPTLRRTIA------------------TTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPL 97
            LA  TR +A R+ C         RRTI                     +Y  SHEWV+LDG++AT+GIT++AAK+LGDVVYV+LP   L
Sbjct:    3 LAAVTRPLASRMLCQRLPVSVAARRTIPAFPRGTAMRNFSRSSQFEVKKYTESHEWVELDGNVATIGITEYAAKSLGDVVYVELPTADL 91          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|1120265205|ref|WP_073131497.1| (glycine cleavage system protein H [Roseomonas rosea] >gi|1110384230|emb|SHI61065.1| glycine cleavage system H protein [Roseomonas rosea])

HSP 1 Score: 68.9366 bits (167), Expect = 1.548e-11
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 0
Query:   53 IATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEG 95
            ++ TR+A SHEWV+LDGD+ATVGI+D A  ALGDVV+VDLPE 
Sbjct:    1 MSQTRFAESHEWVRLDGDVATVGISDHAQNALGDVVFVDLPEA 43          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|503259712|ref|WP_013494373.1| (glycine cleavage system protein H [Intrasporangium calvum] >gi|315590769|gb|ADU50066.1| glycine cleavage system H protein [Intrasporangium calvum DSM 43043])

HSP 1 Score: 68.5514 bits (166), Expect = 2.727e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0
Query:   54 ATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPE 94
            A  +Y   HEWV++DGD+ATVGIT FAA+ALGDVVYVDLPE
Sbjct:    6 ADLKYTKDHEWVRIDGDVATVGITQFAAEALGDVVYVDLPE 46          
BLAST of EWM26801.1 vs. NCBI_GenBank
Match: gi|242806739|ref|XP_002484807.1| (glycine cleavage system H protein [Talaromyces stipitatus ATCC 10500] >gi|218715432|gb|EED14854.1| glycine cleavage system H protein [Talaromyces stipitatus ATCC 10500])

HSP 1 Score: 69.3218 bits (168), Expect = 3.455e-11
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   27 LATATRHVARRIACSSTVFQPTLRRTIA------------------TTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEGPL 97
            LA  TR +A R+ C         RR+I                     +Y  SHEWV+LDG++AT+GIT++AAK+LGDVVYV+LP   L
Sbjct:    3 LAALTRPLASRMLCQRLPVTVAARRSIPAFPRGTTIRSFSRSSQFEVKKYTESHEWVELDGNVATIGITEYAAKSLGDVVYVELPTADL 91          
The following BLAST results are available for this feature:
BLAST of EWM26801.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108892|gb|EWM26801.1|3.790e-158100.00glycine cleavage system h protein [Nannochloropsis... [more]
gi|553183964|ref|XP_005854003.1|1.408e-3998.55glycine cleavage system h protein [Nannochloropsis... [more]
gi|524700074|emb|CDE07141.1|6.883e-1365.22glycine cleavage system H protein [Prevotella sp. ... [more]
gi|212538387|ref|XP_002149349.1|6.948e-1344.94glycine cleavage system H protein [Talaromyces mar... [more]
gi|655969625|ref|WP_029012217.1|5.407e-1239.39glycine cleavage system protein H [Niveispirillum ... [more]
gi|748560868|dbj|GAM33375.1|5.426e-1242.70glycine cleavage system H protein [Talaromyces cel... [more]
gi|973323272|gb|KUL83167.1|5.540e-1242.70hypothetical protein ZTR_10087 [Talaromyces verruc... [more]
gi|1120265205|ref|WP_073131497.1|1.548e-1169.77glycine cleavage system protein H [Roseomonas rose... [more]
gi|503259712|ref|WP_013494373.1|2.727e-1173.17glycine cleavage system protein H [Intrasporangium... [more]
gi|242806739|ref|XP_002484807.1|3.455e-1141.57glycine cleavage system H protein [Talaromyces sti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3844rna3844Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications