EWM26863.1, cds3812 (CDS) Nannochloropsis gaditana

Overview
NameEWM26863.1
Unique Namecds3812
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:138278..138499 +
Alignment locationCM002462.1:138744..139070 +
Alignment locationCM002462.1:139186..139324 +
Alignment locationCM002462.1:139584..140407 +
Alignment locationCM002462.1:140496..140798 +

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Properties
Property NameValue
Protein idEWM26863.1
ProductSmall ubiquitin-related modifier, SUMO
Orig transcript idgnl|cribi|Naga_100097g7.3754.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:138278..138499 +
CM002462.1supercontigCM002462.1:138744..139070 +
CM002462.1supercontigCM002462.1:139186..139324 +
CM002462.1supercontigCM002462.1:139584..140407 +
CM002462.1supercontigCM002462.1:140496..140798 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR022617Rad60/SUMO-like_dom
Homology
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BLAST of EWM26863.1 vs. NCBI_GenBank
Match: gi|585108958|gb|EWM26863.1| (Small ubiquitin-related modifier, SUMO [Nannochloropsis gaditana])

HSP 1 Score: 1243.41 bits (3216), Expect = 0.000e+0
Identity = 604/604 (100.00%), Postives = 604/604 (100.00%), Query Frame = 0 
Query:    1 MSTKSASTTPGMKITKVENTMPAPTAAATLNGENDVSTPSKSTKVCELHKDVSIWRAELLTQTFIGCWRCAMDQAWESPPDTRQSTQQALSYVLALIKGKKEREACINEVLGILFEEGERDKLERESLRKRMEALQSESRESETKWKAASSRVKELEKDEEKLTKQLDKMLTRIDALEAEKEEIQKGTTVLEEMLQQGEKERMALRDDAADSEKRAEELRCQLAAVQEQSRLATSRLEEELAAALARNNKNREQLSSPVPSSSLHLSPTGLPQSQVQFQQAEPSKNPYVSTWISAADQHKLETQRFSAWQPSVPSATAGAVTLDNKPLPSSNNFQSLSHQPQRPQEDQRLKEPDDPFDVAPPTTLAPGLSIHRADGTVSNTKEKGEGTVVDSTPTITDKTSDQDLGEDGGKGNENENTRLEKKKNPIGALFGKLTSKNPVEVGTARFSGRSLARGPGEDKSSSNIKPQTKVQGPTSSSLPSSQASNQSPPRPKISVIAHMDGQERVAFTMYQDDRFQKVMERYLQVKDIQAPVDEVRFVVDANHHTLGPELTPMDFDLKEGATISVRVPAEYVHVKELTSLSGMEEGKEGGKEERGMDEAEAYM 604
            MSTKSASTTPGMKITKVENTMPAPTAAATLNGENDVSTPSKSTKVCELHKDVSIWRAELLTQTFIGCWRCAMDQAWESPPDTRQSTQQALSYVLALIKGKKEREACINEVLGILFEEGERDKLERESLRKRMEALQSESRESETKWKAASSRVKELEKDEEKLTKQLDKMLTRIDALEAEKEEIQKGTTVLEEMLQQGEKERMALRDDAADSEKRAEELRCQLAAVQEQSRLATSRLEEELAAALARNNKNREQLSSPVPSSSLHLSPTGLPQSQVQFQQAEPSKNPYVSTWISAADQHKLETQRFSAWQPSVPSATAGAVTLDNKPLPSSNNFQSLSHQPQRPQEDQRLKEPDDPFDVAPPTTLAPGLSIHRADGTVSNTKEKGEGTVVDSTPTITDKTSDQDLGEDGGKGNENENTRLEKKKNPIGALFGKLTSKNPVEVGTARFSGRSLARGPGEDKSSSNIKPQTKVQGPTSSSLPSSQASNQSPPRPKISVIAHMDGQERVAFTMYQDDRFQKVMERYLQVKDIQAPVDEVRFVVDANHHTLGPELTPMDFDLKEGATISVRVPAEYVHVKELTSLSGMEEGKEGGKEERGMDEAEAYM
Sbjct:    1 MSTKSASTTPGMKITKVENTMPAPTAAATLNGENDVSTPSKSTKVCELHKDVSIWRAELLTQTFIGCWRCAMDQAWESPPDTRQSTQQALSYVLALIKGKKEREACINEVLGILFEEGERDKLERESLRKRMEALQSESRESETKWKAASSRVKELEKDEEKLTKQLDKMLTRIDALEAEKEEIQKGTTVLEEMLQQGEKERMALRDDAADSEKRAEELRCQLAAVQEQSRLATSRLEEELAAALARNNKNREQLSSPVPSSSLHLSPTGLPQSQVQFQQAEPSKNPYVSTWISAADQHKLETQRFSAWQPSVPSATAGAVTLDNKPLPSSNNFQSLSHQPQRPQEDQRLKEPDDPFDVAPPTTLAPGLSIHRADGTVSNTKEKGEGTVVDSTPTITDKTSDQDLGEDGGKGNENENTRLEKKKNPIGALFGKLTSKNPVEVGTARFSGRSLARGPGEDKSSSNIKPQTKVQGPTSSSLPSSQASNQSPPRPKISVIAHMDGQERVAFTMYQDDRFQKVMERYLQVKDIQAPVDEVRFVVDANHHTLGPELTPMDFDLKEGATISVRVPAEYVHVKELTSLSGMEEGKEGGKEERGMDEAEAYM 604
The following BLAST results are available for this feature:
BLAST of EWM26863.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108958|gb|EWM26863.1|0.000e+0100.00Small ubiquitin-related modifier, SUMO [Nannochlor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3821rna3821Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications