EWM26859.1, cds3806 (CDS) Nannochloropsis gaditana

Overview
NameEWM26859.1
Unique Namecds3806
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:123040..123822 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26859.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100097g2.3750.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:123040..123822 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|585108954|gb|EWM26859.1| (hypothetical protein Naga_100097g2 [Nannochloropsis gaditana])

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MVPNHAVGAFLGSRQPGGRRWPSGAAHLVRHPRGVGGRNGGGEHCDAVRPRPNRHGRFDREGFPTRAGSHDQGGGGKRLLFQRFDGRDTRGDSKSGHCLRLSLGLPRGTDAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGKEGEGEGGRDGQELGWKRLE 260
            MVPNHAVGAFLGSRQPGGRRWPSGAAHLVRHPRGVGGRNGGGEHCDAVRPRPNRHGRFDREGFPTRAGSHDQGGGGKRLLFQRFDGRDTRGDSKSGHCLRLSLGLPRGTDAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGKEGEGEGGRDGQELGWKRLE
Sbjct:    1 MVPNHAVGAFLGSRQPGGRRWPSGAAHLVRHPRGVGGRNGGGEHCDAVRPRPNRHGRFDREGFPTRAGSHDQGGGGKRLLFQRFDGRDTRGDSKSGHCLRLSLGLPRGTDAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGKEGEGEGGRDGQELGWKRLE 260          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|298707655|emb|CBJ25972.1| (eukaryotic initiation factor 3H1 subunit [Ectocarpus siliculosus])

HSP 1 Score: 81.6481 bits (200), Expect = 2.418e-14
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 0
Query:  119 EGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAE------------------PNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEA 232
            E  +D DF +LDLS NP+L +NLE L   +D +S + +K  ++      +       R   +RK++ +ER A                   PNR++ ++ + QI AYC QI+ F+   F KL+L GSL KEA
Sbjct:  204 EDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQK--QDQARLLQKRKQQNDERRAAGEEALPEEDSALDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 333          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|397608330|gb|EJK59967.1| (hypothetical protein THAOC_19753 [Thalassiosira oceanica])

HSP 1 Score: 69.707 bits (169), Expect = 3.845e-10
Identity = 38/126 (30.16%), Postives = 65/126 (51.59%), Query Frame = 0
Query:  110 DAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFA----TGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231
            D + G  G EG  D  F +LDLS NP+L ++LE L   VD ++ +  K + +     +    R          ++  +E   ++  P R+++++ + QI  YC Q+  F+ GGF KL++   +HKE
Sbjct:  204 DGLHGPYGEEGGPDTTFDRLDLSTNPYLEKHLEFLCTWVDDLASEQYKFQHYTRSLRSNVDTRNKGRKAKDELAQAIQEGWTKSDAPRRMESLLMSNQIRTYCDQVEKFTGGGFGKLFMTSGIHKE 329          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|922853135|gb|KOO21772.1| (eukaryotic translation initiation factor 3 subunit h-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-9
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 0
Query:  124 ADFTKLDLSFNPFLSRNLELLSEEVDRM---SGQLEKCKRFATGQGGRGSYHGGPR---SWSRRK-------EEEEERN------AEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPA 235
            ADF++L+L+ NPFL + L+LL E ++ +   S +L+  +R    Q G  S +   +   + +RR        EE+   N      A+P+RL++++   Q+ AYCQQI+ F+   F+KL+L+ SL+  A  A
Sbjct:  234 ADFSRLELNTNPFLEKQLQLLIECIEDLQQESSKLQHYERAVQRQKGTQSSYLAKKKAEAVARRARGEEPLPEEDLTHNSLFKPIAKPSRLESLLITDQMSAYCQQINQFTGQSFAKLFLLQSLNNGADKA 364          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|224002963|ref|XP_002291153.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972929|gb|EED91260.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.0106 bits (162), Expect = 2.761e-9
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0
Query:  110 DAVEGGGGGEGA-LDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFA-TGQGGRGSYHGGPRSWSRRKEEEEE---RNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231
            D + G    EG   D  F +LDLS NP+L ++LE L   VD ++ +  K + +  + +   G    G ++     +  EE   R+  P R+++++ + QI  YC Q+  F+  GF KL+L   LH E
Sbjct:  205 DGLHGSYDAEGTGADTTFDRLDLSTNPYLEKHLEFLCSWVDDLAAEQYKFQHYTRSLRSSVGDNRKGRKAKEEMAQAIEEGWTRSEAPKRMESLLMSNQIRTYCDQVEKFTGDGFGKLFLTSGLHTE 331          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|168051379|ref|XP_001778132.1| (predicted protein [Physcomitrella patens] >gi|162670454|gb|EDQ57022.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 67.0106 bits (162), Expect = 2.849e-9
Identity = 43/132 (32.58%), Postives = 60/132 (45.45%), Query Frame = 0
Query:  121 ALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSW--SRRKEEEEERNA-------------------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231
            A   DF +L LS NPF+ +NLE L E +D +S + +K   F              ++W   RR E    R A                   EP+RLD+ +   QI  YC Q++ F+   FSKLYL+ + H E
Sbjct:  205 ATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQK---FQYYYRNLSRQQVQQQTWLQKRRTENAARRAAGEEPLPEEEPNNPIFKTLPEPSRLDSYLITNQISNYCSQVNGFAAQSFSKLYLMDAFHDE 333          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|302813453|ref|XP_002988412.1| (hypothetical protein SELMODRAFT_271999 [Selaginella moellendorffii] >gi|300143814|gb|EFJ10502.1| hypothetical protein SELMODRAFT_271999 [Selaginella moellendorffii])

HSP 1 Score: 65.855 bits (159), Expect = 7.195e-9
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 0
Query:  121 ALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKE-------------EEEERNA------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231
            A   DF +L LS NPF+ +NLE L E +D +S + +K + F      R           RR E             E++  NA      EP+RLD+ +   QI  YC QI+ F+   FSK+YL+ ++H++
Sbjct:  214 ATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQ-FYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKSIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHED 342          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|303275388|ref|XP_003056988.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226461340|gb|EEH58633.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 65.855 bits (159), Expect = 7.493e-9
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 0
Query:  120 GALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSW-SRRKEEEEERNA---------------------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231
            G   +D  +L +S NPFL ++LE LSE +D +S + +K   +   Q  R         W ++RK+E   R A                     EP+RL+  + A Q++ YC+QIS FS+    KL LV    KE
Sbjct:  221 GVTQSDLDRLSMSTNPFLEKSLEFLSECMDDLSAEQQKFSYY-MRQHARQQLIAS--QWMTKRKQENAARQAAGQELLPEEDDPNNPAAKSASEPSRLEAFLIANQVNQYCEQISDFSEQSLQKLLLVSGARKE 351          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|302796157|ref|XP_002979841.1| (hypothetical protein SELMODRAFT_153526 [Selaginella moellendorffii] >gi|300152601|gb|EFJ19243.1| hypothetical protein SELMODRAFT_153526 [Selaginella moellendorffii])

HSP 1 Score: 65.855 bits (159), Expect = 8.776e-9
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 0
Query:  121 ALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKE-------------EEEERNA------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231
            A   DF +L LS NPF+ +NLE L E +D +S + +K + F      R           RR E             E++  NA      EP+RLD+ +   QI  YC QI+ F+   FSK+YL+ ++H++
Sbjct:  214 ATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQ-FYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKLIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHED 342          
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|769816194|ref|XP_011622063.1| (eukaryotic translation initiation factor 3 subunit H [Amborella trichopoda])

HSP 1 Score: 64.3142 bits (155), Expect = 2.933e-8
Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 0
Query:  124 ADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNA-------------------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLH 229
             D+ +L LS NPF+ RNLE L E +D +S + +K + F      R           RR E +  ++A                   EP+RLD+ +   QI  YC QI+ F+   FS++YL+ ++H
Sbjct:  212 CDYDRLVLSTNPFMERNLEFLVECMDDLSMEQQKFQ-FYYRNLSRQQAQQQAWLQKRRAENKARKDAGEDPLPEEDPSNPIFKPVPEPSRLDSFLITNQISNYCNQINGFAGQSFSRIYLMDAIH 335          
The following BLAST results are available for this feature:
BLAST of EWM26859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108954|gb|EWM26859.1|0.000e+0100.00hypothetical protein Naga_100097g2 [Nannochloropsi... [more]
gi|298707655|emb|CBJ25972.1|2.418e-1434.09eukaryotic initiation factor 3H1 subunit [Ectocarp... [more]
gi|397608330|gb|EJK59967.1|3.845e-1030.16hypothetical protein THAOC_19753 [Thalassiosira oc... [more]
gi|922853135|gb|KOO21772.1|1.943e-933.59eukaryotic translation initiation factor 3 subunit... [more]
gi|224002963|ref|XP_002291153.1|2.761e-931.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|168051379|ref|XP_001778132.1|2.849e-932.58predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|302813453|ref|XP_002988412.1|7.195e-933.08hypothetical protein SELMODRAFT_271999 [Selaginell... [more]
gi|303275388|ref|XP_003056988.1|7.493e-932.09predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|302796157|ref|XP_002979841.1|8.776e-933.08hypothetical protein SELMODRAFT_153526 [Selaginell... [more]
gi|769816194|ref|XP_011622063.1|2.933e-831.20eukaryotic translation initiation factor 3 subunit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3815rna3815Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications