EWM26859.1, cds3806 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|585108954|gb|EWM26859.1| (hypothetical protein Naga_100097g2 [Nannochloropsis gaditana]) HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0 Query: 1 MVPNHAVGAFLGSRQPGGRRWPSGAAHLVRHPRGVGGRNGGGEHCDAVRPRPNRHGRFDREGFPTRAGSHDQGGGGKRLLFQRFDGRDTRGDSKSGHCLRLSLGLPRGTDAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGKEGEGEGGRDGQELGWKRLE 260 MVPNHAVGAFLGSRQPGGRRWPSGAAHLVRHPRGVGGRNGGGEHCDAVRPRPNRHGRFDREGFPTRAGSHDQGGGGKRLLFQRFDGRDTRGDSKSGHCLRLSLGLPRGTDAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGKEGEGEGGRDGQELGWKRLE Sbjct: 1 MVPNHAVGAFLGSRQPGGRRWPSGAAHLVRHPRGVGGRNGGGEHCDAVRPRPNRHGRFDREGFPTRAGSHDQGGGGKRLLFQRFDGRDTRGDSKSGHCLRLSLGLPRGTDAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGKEGEGEGGRDGQELGWKRLE 260
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|298707655|emb|CBJ25972.1| (eukaryotic initiation factor 3H1 subunit [Ectocarpus siliculosus]) HSP 1 Score: 81.6481 bits (200), Expect = 2.418e-14 Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 0 Query: 119 EGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNAE------------------PNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEA 232 E +D DF +LDLS NP+L +NLE L +D +S + +K ++ + R +RK++ +ER A PNR++ ++ + QI AYC QI+ F+ F KL+L GSL KEA Sbjct: 204 EDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQK--QDQARLLQKRKQQNDERRAAGEEALPEEDSALDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 333
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|397608330|gb|EJK59967.1| (hypothetical protein THAOC_19753 [Thalassiosira oceanica]) HSP 1 Score: 69.707 bits (169), Expect = 3.845e-10 Identity = 38/126 (30.16%), Postives = 65/126 (51.59%), Query Frame = 0 Query: 110 DAVEGGGGGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFA----TGQGGRGSYHGGPRSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231 D + G G EG D F +LDLS NP+L ++LE L VD ++ + K + + + R ++ +E ++ P R+++++ + QI YC Q+ F+ GGF KL++ +HKE Sbjct: 204 DGLHGPYGEEGGPDTTFDRLDLSTNPYLEKHLEFLCTWVDDLASEQYKFQHYTRSLRSNVDTRNKGRKAKDELAQAIQEGWTKSDAPRRMESLLMSNQIRTYCDQVEKFTGGGFGKLFMTSGIHKE 329
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|922853135|gb|KOO21772.1| (eukaryotic translation initiation factor 3 subunit h-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-9 Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 0 Query: 124 ADFTKLDLSFNPFLSRNLELLSEEVDRM---SGQLEKCKRFATGQGGRGSYHGGPR---SWSRRK-------EEEEERN------AEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPA 235 ADF++L+L+ NPFL + L+LL E ++ + S +L+ +R Q G S + + + +RR EE+ N A+P+RL++++ Q+ AYCQQI+ F+ F+KL+L+ SL+ A A Sbjct: 234 ADFSRLELNTNPFLEKQLQLLIECIEDLQQESSKLQHYERAVQRQKGTQSSYLAKKKAEAVARRARGEEPLPEEDLTHNSLFKPIAKPSRLESLLITDQMSAYCQQINQFTGQSFAKLFLLQSLNNGADKA 364
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|224002963|ref|XP_002291153.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972929|gb|EED91260.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.0106 bits (162), Expect = 2.761e-9 Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0 Query: 110 DAVEGGGGGEGA-LDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFA-TGQGGRGSYHGGPRSWSRRKEEEEE---RNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231 D + G EG D F +LDLS NP+L ++LE L VD ++ + K + + + + G G ++ + EE R+ P R+++++ + QI YC Q+ F+ GF KL+L LH E Sbjct: 205 DGLHGSYDAEGTGADTTFDRLDLSTNPYLEKHLEFLCSWVDDLAAEQYKFQHYTRSLRSSVGDNRKGRKAKEEMAQAIEEGWTRSEAPKRMESLLMSNQIRTYCDQVEKFTGDGFGKLFLTSGLHTE 331
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|168051379|ref|XP_001778132.1| (predicted protein [Physcomitrella patens] >gi|162670454|gb|EDQ57022.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 67.0106 bits (162), Expect = 2.849e-9 Identity = 43/132 (32.58%), Postives = 60/132 (45.45%), Query Frame = 0 Query: 121 ALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSW--SRRKEEEEERNA-------------------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231 A DF +L LS NPF+ +NLE L E +D +S + +K F ++W RR E R A EP+RLD+ + QI YC Q++ F+ FSKLYL+ + H E Sbjct: 205 ATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQK---FQYYYRNLSRQQVQQQTWLQKRRTENAARRAAGEEPLPEEEPNNPIFKTLPEPSRLDSYLITNQISNYCSQVNGFAAQSFSKLYLMDAFHDE 333
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|302813453|ref|XP_002988412.1| (hypothetical protein SELMODRAFT_271999 [Selaginella moellendorffii] >gi|300143814|gb|EFJ10502.1| hypothetical protein SELMODRAFT_271999 [Selaginella moellendorffii]) HSP 1 Score: 65.855 bits (159), Expect = 7.195e-9 Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 0 Query: 121 ALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKE-------------EEEERNA------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231 A DF +L LS NPF+ +NLE L E +D +S + +K + F R RR E E++ NA EP+RLD+ + QI YC QI+ F+ FSK+YL+ ++H++ Sbjct: 214 ATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQ-FYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKSIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHED 342
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|303275388|ref|XP_003056988.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226461340|gb|EEH58633.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 65.855 bits (159), Expect = 7.493e-9 Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 0 Query: 120 GALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSW-SRRKEEEEERNA---------------------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231 G +D +L +S NPFL ++LE LSE +D +S + +K + Q R W ++RK+E R A EP+RL+ + A Q++ YC+QIS FS+ KL LV KE Sbjct: 221 GVTQSDLDRLSMSTNPFLEKSLEFLSECMDDLSAEQQKFSYY-MRQHARQQLIAS--QWMTKRKQENAARQAAGQELLPEEDDPNNPAAKSASEPSRLEAFLIANQVNQYCEQISDFSEQSLQKLLLVSGARKE 351
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|302796157|ref|XP_002979841.1| (hypothetical protein SELMODRAFT_153526 [Selaginella moellendorffii] >gi|300152601|gb|EFJ19243.1| hypothetical protein SELMODRAFT_153526 [Selaginella moellendorffii]) HSP 1 Score: 65.855 bits (159), Expect = 8.776e-9 Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 0 Query: 121 ALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKE-------------EEEERNA------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKE 231 A DF +L LS NPF+ +NLE L E +D +S + +K + F R RR E E++ NA EP+RLD+ + QI YC QI+ F+ FSK+YL+ ++H++ Sbjct: 214 ATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQ-FYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKLIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHED 342
BLAST of EWM26859.1 vs. NCBI_GenBank
Match: gi|769816194|ref|XP_011622063.1| (eukaryotic translation initiation factor 3 subunit H [Amborella trichopoda]) HSP 1 Score: 64.3142 bits (155), Expect = 2.933e-8 Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 0 Query: 124 ADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGPRSWSRRKEEEEERNA-------------------EPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLH 229 D+ +L LS NPF+ RNLE L E +D +S + +K + F R RR E + ++A EP+RLD+ + QI YC QI+ F+ FS++YL+ ++H Sbjct: 212 CDYDRLVLSTNPFMERNLEFLVECMDDLSMEQQKFQ-FYYRNLSRQQAQQQAWLQKRRAENKARKDAGEDPLPEEDPSNPIFKPVPEPSRLDSFLITNQISNYCNQINGFAGQSFSRIYLMDAIH 335 The following BLAST results are available for this feature:
BLAST of EWM26859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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