EWM26866.1, cds3805 (CDS) Nannochloropsis gaditana

Overview
NameEWM26866.1
Unique Namecds3805
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:121342..121354 +
Alignment locationCM002462.1:121452..121489 +
Alignment locationCM002462.1:121533..121581 +
Alignment locationCM002462.1:121800..121988 +
Alignment locationCM002462.1:122296..122338 +
Alignment locationCM002462.1:122423..122499 +
Alignment locationCM002462.1:122577..122743 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26866.1
Productnadh-glutamate synthase small chain
Orig transcript idgnl|cribi|Naga_100097g1.3757.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:121342..121354 +
CM002462.1supercontigCM002462.1:121452..121489 +
CM002462.1supercontigCM002462.1:121533..121581 +
CM002462.1supercontigCM002462.1:121800..121988 +
CM002462.1supercontigCM002462.1:122296..122338 +
CM002462.1supercontigCM002462.1:122423..122499 +
CM002462.1supercontigCM002462.1:122577..122743 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Homology
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|585108961|gb|EWM26866.1| (nadh-glutamate synthase small chain [Nannochloropsis gaditana])

HSP 1 Score: 386.341 bits (991), Expect = 9.575e-136
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MNFSRQRQGSGHRERGGWPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKSEVTEDEAYIGAIEERGRRGRGFAGRKGREEETALGGARTWTPAAGVYAIFDERSKVSGLFSRHFSRPQKPSRAIPSLLFGERGELGREEEKR 191
            MNFSRQRQGSGHRERGGWPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKSEVTEDEAYIGAIEERGRRGRGFAGRKGREEETALGGARTWTPAAGVYAIFDERSKVSGLFSRHFSRPQKPSRAIPSLLFGERGELGREEEKR
Sbjct:    1 MNFSRQRQGSGHRERGGWPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKSEVTEDEAYIGAIEERGRRGRGFAGRKGREEETALGGARTWTPAAGVYAIFDERSKVSGLFSRHFSRPQKPSRAIPSLLFGERGELGREEEKR 191          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|298710244|emb|CBJ26319.1| (Glutamate synthase (NADH/NADPH-dependent) [Ectocarpus siliculosus])

HSP 1 Score: 133.65 bits (335), Expect = 3.804e-33
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKSE-VTEDEAYIGAI 111
            WPA LV+LAMGF++PES I   L L++DQR NI A YGDYRTN +GVF+AGDCRRGQSLVVWAINEGRG A++VN +L  K+E   E+E +IGA+
Sbjct:  465 WPAQLVVLAMGFVSPESAISKPLKLELDQRENIHAPYGDYRTNAEGVFSAGDCRRGQSLVVWAINEGRGAADAVNSYLAAKAEQQMEEETFIGAM 559          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|676382599|ref|XP_009034578.1| (hypothetical protein AURANDRAFT_52709 [Aureococcus anophagefferens] >gi|323455150|gb|EGB11019.1| hypothetical protein AURANDRAFT_52709 [Aureococcus anophagefferens])

HSP 1 Score: 129.413 bits (324), Expect = 1.277e-31
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKS 99
            WPADLVILAMGF++PE T+P  L LD DQR NIRA+YGDYR++++GVFAAGDCRRGQSLVVWAINEGRG A   +++L+ +S
Sbjct:  465 WPADLVILAMGFVSPELTVPRQLGLDTDQRDNIRAEYGDYRSSLEGVFAAGDCRRGQSLVVWAINEGRGAALKCDEYLMTRS 546          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|1210529990|dbj|GAX11523.1| (glutamate synthase (NADPH/NADH) small chain [Fistulifera solaris])

HSP 1 Score: 127.487 bits (319), Expect = 6.697e-31
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKSEVTEDEAYI 108
            WPADLV+L+MGF+ PE  I   L LD DQR NI A YGDYRTNV+GVFA GDCRRGQSLVVWAINEGRGVA++ +++L +K +     A++
Sbjct:  472 WPADLVVLSMGFVAPEQYIVEELGLDTDQRKNIHAVYGDYRTNVEGVFAGGDCRRGQSLVVWAINEGRGVADACHQYLQQKRDSVPSSAHV 562          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|1210525177|dbj|GAX15936.1| (glutamate synthase (NADPH/NADH) small chain [Fistulifera solaris])

HSP 1 Score: 126.331 bits (316), Expect = 2.157e-30
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEKSEVTEDEAYI 108
            WPADLV+L+MGF+ PE  I   L LD DQR NI A YGDYRTNV+GVFA GDCRRGQSLVVWAINEGRGVA++ +++L +K +     A +
Sbjct:  472 WPADLVVLSMGFVAPEQYIVEELGLDTDQRKNIHAVYGDYRTNVEGVFAGGDCRRGQSLVVWAINEGRGVADACHQYLQQKRDSVPSSAQV 562          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|1072232368|gb|OEU17099.1| (hypothetical protein FRACYDRAFT_260715 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.02 bits (310), Expect = 6.596e-30
Identity = 54/81 (66.67%), Postives = 71/81 (87.65%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEK 98
            WPADLV+L+MGF++PE+ +   L LDVDQR+NI+A YGD+RT+V+GVFA GDCRRGQSLVVWAINEGRG A++ +++L +K
Sbjct:  398 WPADLVVLSMGFLSPEAYVTEELGLDVDQRNNIQAVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACDQYLQQK 478          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|970656231|gb|KUF94268.1| (helicase mot1 [Phytophthora nicotianae])

HSP 1 Score: 124.02 bits (310), Expect = 7.113e-30
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 0
Query:   19 PADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIE---KSEVTEDEAY 107
            P DLV+ AMGF++PE  I   L+L+VDQR NIRA YGDY+T+V+GVFAAGDCRRGQSLVVWAINEGRGVA++V K+ ++   + EV++++ +
Sbjct:  422 PCDLVLFAMGFVHPEQKIAEALNLEVDQRRNIRAAYGDYQTSVEGVFAAGDCRRGQSLVVWAINEGRGVADAVEKYFLQEGYQPEVSQNQRF 513          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|1200572312|gb|OUW83022.1| (glutamate synthase, partial [Chitinophagales bacterium TMED214])

HSP 1 Score: 115.931 bits (289), Expect = 9.320e-30
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFL 95
            WPA L++LAMGF+ PES +     L+VD R N +A++G Y TNVDGVFAAGDCRRGQSLVVWAINEGRG A +++ +L
Sbjct:   43 WPAQLILLAMGFLGPESYLAEAAGLEVDSRSNFKAEHGQYATNVDGVFAAGDCRRGQSLVVWAINEGRGAARAIDIYL 120          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|1072232398|gb|OEU17129.1| (NADH-glutamate synthase small subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.02 bits (310), Expect = 9.627e-30
Identity = 54/81 (66.67%), Postives = 71/81 (87.65%), Query Frame = 0
Query:   18 WPADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIEK 98
            WPADLV+L+MGF++PE+ +   L LDVDQR+NI+A YGD+RT+V+GVFA GDCRRGQSLVVWAINEGRG A++ +++L +K
Sbjct:  416 WPADLVVLSMGFLSPEAYVTEELGLDVDQRNNIQAVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACDQYLQQK 496          
BLAST of EWM26866.1 vs. NCBI_GenBank
Match: gi|570971936|gb|ETP34989.1| (hypothetical protein F442_16769 [Phytophthora parasitica P10297])

HSP 1 Score: 124.02 bits (310), Expect = 9.982e-30
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 0
Query:   19 PADLVILAMGFMNPESTIPSGLSLDVDQRHNIRADYGDYRTNVDGVFAAGDCRRGQSLVVWAINEGRGVAESVNKFLIE---KSEVTEDEAY 107
            P DLV+ AMGF++PE  I   L+L+VDQR NIRA YGDY+T+V+GVFAAGDCRRGQSLVVWAINEGRGVA++V K+ ++   + EV++++ +
Sbjct:  450 PCDLVLFAMGFVHPEQKIAEALNLEVDQRRNIRAAYGDYQTSVEGVFAAGDCRRGQSLVVWAINEGRGVADAVEKYFLQEGYQPEVSQNQRF 541          
The following BLAST results are available for this feature:
BLAST of EWM26866.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108961|gb|EWM26866.1|9.575e-136100.00nadh-glutamate synthase small chain [Nannochlorops... [more]
gi|298710244|emb|CBJ26319.1|3.804e-3366.32Glutamate synthase (NADH/NADPH-dependent) [Ectocar... [more]
gi|676382599|ref|XP_009034578.1|1.277e-3170.73hypothetical protein AURANDRAFT_52709 [Aureococcus... [more]
gi|1210529990|dbj|GAX11523.1|6.697e-3163.74glutamate synthase (NADPH/NADH) small chain [Fistu... [more]
gi|1210525177|dbj|GAX15936.1|2.157e-3063.74glutamate synthase (NADPH/NADH) small chain [Fistu... [more]
gi|1072232368|gb|OEU17099.1|6.596e-3066.67hypothetical protein FRACYDRAFT_260715 [Fragilario... [more]
gi|970656231|gb|KUF94268.1|7.113e-3061.96helicase mot1 [Phytophthora nicotianae][more]
gi|1200572312|gb|OUW83022.1|9.320e-3064.10glutamate synthase, partial [Chitinophagales bacte... [more]
gi|1072232398|gb|OEU17129.1|9.627e-3066.67NADH-glutamate synthase small subunit [Fragilariop... [more]
gi|570971936|gb|ETP34989.1|9.982e-3061.96hypothetical protein F442_16769 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3814rna3814Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications