EWM30291.1, cds379 (CDS) Nannochloropsis gaditana

Overview
NameEWM30291.1
Unique Namecds379
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:928829..929512 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30291.1
Productnadh ubiquinone
Orig transcript idgnl|cribi|Naga_100003g108.1808.mrna
GeneNUO10
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:928829..929512 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0006091generation of precursor metabolites and energy
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:00515394 iron, 4 sulfur cluster binding
GO:0048038quinone binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006137NADH_UbQ_OxRdtase-like_20kDa
IPR006138NADH_UQ_OxRdtase_20Kd_su
Homology
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|585112950|gb|EWM30291.1| (nadh ubiquinone [Nannochloropsis gaditana])

HSP 1 Score: 470.315 bits (1209), Expect = 6.607e-168
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
Query:    1 MALSRARIIAMTTSRAIRGVPGCIRDPCSSSITGQNVTRTCIRELHASGRASKSTEVTKAAGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            MALSRARIIAMTTSRAIRGVPGCIRDPCSSSITGQNVTRTCIRELHASGRASKSTEVTKAAGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK
Sbjct:    1 MALSRARIIAMTTSRAIRGVPGCIRDPCSSSITGQNVTRTCIRELHASGRASKSTEVTKAAGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|224007275|ref|XP_002292597.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971459|gb|EED89793.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 330.102 bits (845), Expect = 1.370e-112
Identity = 157/186 (84.41%), Postives = 166/186 (89.25%), Query Frame = 0
Query:   48 SGRASKSTEVTKAAGGVDQLLK------TKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            S +AS +T       GVD+LL       T N VEY VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AA+RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+KGNK LLLKLRK
Sbjct:   31 SDKASSTTSSLTRLDGVDELLTGTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 216          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|299471504|emb|CBN79990.1| (NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10 [Ectocarpus siliculosus])

HSP 1 Score: 328.946 bits (842), Expect = 5.547e-112
Identity = 155/179 (86.59%), Postives = 168/179 (93.85%), Query Frame = 0
Query:   50 RASKSTEVTKAAGGVDQLLKT-KNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            R   S+E+T+A   VDQL++  K GVE+VVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAA+RYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+KGNK LLL+L+K
Sbjct:   48 RKPTSSELTRAEN-VDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 225          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|397607309|gb|EJK59639.1| (hypothetical protein THAOC_20103 [Thalassiosira oceanica])

HSP 1 Score: 325.479 bits (833), Expect = 1.307e-110
Identity = 155/187 (82.89%), Postives = 165/187 (88.24%), Query Frame = 0
Query:   47 ASGRASKSTEVTKAAGGVDQLLK------TKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            A  +AS +T       GVD++L         N VEY VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AA+RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+KGNK LLLKLRK
Sbjct:   36 APEKASSTTSSLTRLEGVDEVLTGMGGVPVNNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 222          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|1072231269|gb|OEU16002.1| (NADH:ubiquinone reductase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 320.857 bits (821), Expect = 8.979e-109
Identity = 147/164 (89.63%), Postives = 158/164 (96.34%), Query Frame = 0
Query:   64 VDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            +DQ+   K+ VEY +S+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AA+RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALL+GMLQLQKK+KGNK LLLK+RK
Sbjct:   61 LDQV-PVKDNVEYTISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLFGMLQLQKKIKGNKALLLKMRK 223          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|219130938|ref|XP_002185609.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402949|gb|EEC42907.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 317.005 bits (811), Expect = 3.605e-108
Identity = 146/158 (92.41%), Postives = 155/158 (98.10%), Query Frame = 0
Query:   70 TKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            T + VEY +S+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AA+RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG++QLQKKVKGNKGLLL+LRK
Sbjct:    9 TADNVEYAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLIQLQKKVKGNKGLLLRLRK 166          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|1210511446|dbj|GAX29260.1| (NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Fistulifera solaris] >gi|1210512984|dbj|GAX27992.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Fistulifera solaris])

HSP 1 Score: 318.161 bits (814), Expect = 8.216e-108
Identity = 149/188 (79.26%), Postives = 162/188 (86.17%), Query Frame = 0
Query:   40 TCIRELHASGRASKSTEVTKAAGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            T   +  A G+     E+    G V       + VEY +S+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AA+RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYA+VRGCDRIVPVDIYVPGCPPTAEALLYG++QLQKK+K NKGLLL+LRK
Sbjct:   29 TAQSQTSALGKLDNVEEMLTGGGNV----PVADNVEYAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAIVRGCDRIVPVDIYVPGCPPTAEALLYGLIQLQKKIKSNKGLLLRLRK 212          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|673025950|ref|XP_008866936.1| (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Aphanomyces invadans] >gi|574476983|gb|ETW03980.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 311.997 bits (798), Expect = 1.537e-105
Identity = 149/195 (76.41%), Postives = 165/195 (84.62%), Query Frame = 0
Query:   37 VTRTCIRELHASGRASKSTEVTKAAGGVDQLLKT----KNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            V+R     + A+  +++S  V K +     L  T    +N VEYVV+KVDDLVNW R+ SLWPMTFGLACCAVEMMH+A +RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYAVVRG DRIVPVDIYVPGCPPTAEA LY MLQLQKK+KGNKGLLLKLRK
Sbjct:   12 VSRVLPTSVAAAPLSTQSDAVAKTS--FKDLFSTEANARNSVEYVVAKVDDLVNWGRRSSLWPMTFGLACCAVEMMHTAGSRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRYVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYVPGCPPTAEAFLYAMLQLQKKIKGNKGLLLKLRK 204          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|1173951597|gb|OQR99442.1| (NADH ubiquinone oxidoreductase [Thraustotheca clavata])

HSP 1 Score: 310.842 bits (795), Expect = 2.355e-105
Identity = 146/184 (79.35%), Postives = 159/184 (86.41%), Query Frame = 0
Query:   47 ASGRASKSTEVTKAAGGVDQLLK---TKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            A G  +    ++ A   V Q L+    KN VEYVVSKVDDLVNWAR+GS+WPMTFGLACCAVEMMH+A +RYD ER GMVFRASPRQSDVMIVAGTLTNKMAPA R+VYDQMPEPR+VVSMGSCANGGGYYHYSY+VVRG DRI+PVDIYVPGCPPTAEALLYGMLQLQKK+K NK LLLKLRK
Sbjct:    3 ARGVPAAKKALSTAPASVSQFLEPNNAKNSVEYVVSKVDDLVNWARRGSMWPMTFGLACCAVEMMHTAGSRYDFERMGMVFRASPRQSDVMIVAGTLTNKMAPAFRRVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGVDRIIPVDIYVPGCPPTAEALLYGMLQLQKKIKSNKSLLLKLRK 186          
BLAST of EWM30291.1 vs. NCBI_GenBank
Match: gi|698820757|ref|XP_009843407.1| (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Aphanomyces astaci] >gi|574101475|gb|ETV67038.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Aphanomyces astaci])

HSP 1 Score: 310.842 bits (795), Expect = 3.613e-105
Identity = 142/157 (90.45%), Postives = 150/157 (95.54%), Query Frame = 0
Query:   71 KNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
            KN VEYVV+KVDDLVNW R+ SLWPMTFGLACCAVEMMH+A +RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYAVVRG DRIVPVDIYVPGCPPTAEA LY MLQLQKK+KGNKGLLLKLRK
Sbjct:   48 KNSVEYVVAKVDDLVNWGRRSSLWPMTFGLACCAVEMMHTAGSRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRYVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYVPGCPPTAEAFLYAMLQLQKKIKGNKGLLLKLRK 204          
The following BLAST results are available for this feature:
BLAST of EWM30291.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112950|gb|EWM30291.1|6.607e-168100.00nadh ubiquinone [Nannochloropsis gaditana][more]
gi|224007275|ref|XP_002292597.1|1.370e-11284.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299471504|emb|CBN79990.1|5.547e-11286.59NUO10 homolog, NADH dehydrogenase (ubiquinone) sub... [more]
gi|397607309|gb|EJK59639.1|1.307e-11082.89hypothetical protein THAOC_20103 [Thalassiosira oc... [more]
gi|1072231269|gb|OEU16002.1|8.979e-10989.63NADH:ubiquinone reductase [Fragilariopsis cylindru... [more]
gi|219130938|ref|XP_002185609.1|3.605e-10892.41predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210511446|dbj|GAX29260.1|8.216e-10879.26NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Fi... [more]
gi|673025950|ref|XP_008866936.1|1.537e-10576.41NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
gi|1173951597|gb|OQR99442.1|2.355e-10579.35NADH ubiquinone oxidoreductase [Thraustotheca clav... [more]
gi|698820757|ref|XP_009843407.1|3.613e-10590.45NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna379rna379Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications